Wall clock time and date at job start Tue Mar 31 2020 16:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86805 * 120.00069 * 2 1 4 4 H 1.48497 * 109.47424 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46665 * 300.00013 * 3 2 1 6 6 H 1.48506 * 109.46922 * 59.99604 * 3 2 1 7 7 C 1.38803 * 120.00463 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00423 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99791 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00017 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47021 * 180.02562 * 10 9 7 12 12 O 1.20827 * 120.00038 * 0.02562 * 11 10 9 13 13 O 1.34230 * 119.99950 * 179.97438 * 11 10 9 14 14 C 1.45201 * 116.99920 * 179.97438 * 13 11 10 15 15 C 1.50707 * 109.47241 * 180.02562 * 14 13 11 16 16 O 1.21290 * 119.99654 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00315 * 179.97438 * 15 14 13 18 18 C 1.40039 * 120.00174 * 175.54340 * 17 15 14 19 19 C 1.38792 * 120.06128 * 34.64483 * 18 17 15 20 20 C 1.38342 * 119.92596 * 179.78831 * 19 18 17 21 21 F 1.35104 * 119.96819 * 180.22976 * 20 19 18 22 22 C 1.38489 * 120.06462 * 0.48889 * 20 19 18 23 23 C 1.38258 * 120.12765 * 359.74016 * 22 20 19 24 24 C 1.38296 * 120.06827 * 0.02826 * 23 22 20 25 25 F 1.35105 * 120.03019 * 179.97438 * 24 23 22 26 26 H 0.96991 * 120.00459 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47047 * 60.00255 * 10 9 7 28 28 H 1.08999 * 109.47464 * 300.00226 * 10 9 7 29 29 H 1.09002 * 109.47286 * 60.00407 * 14 13 11 30 30 H 1.09006 * 109.47366 * 300.00230 * 14 13 11 31 31 H 0.97005 * 120.00069 * 355.55197 * 17 15 14 32 32 H 1.07997 * 120.03944 * 359.97438 * 19 18 17 33 33 H 1.08000 * 119.93623 * 179.72285 * 22 20 19 34 34 H 1.07996 * 119.96354 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0019 10 6 2.5160 -3.8914 0.0029 11 6 1.9875 -5.3027 0.0036 12 8 0.7957 -5.5015 0.0029 13 8 2.8409 -6.3388 0.0039 14 6 2.2612 -7.6701 0.0050 15 6 3.3634 -8.6980 0.0059 16 8 4.5233 -8.3433 0.0059 17 7 3.0603 -10.0111 0.0075 18 6 4.0809 -10.9655 -0.0860 19 6 5.3121 -10.7273 0.5089 20 6 6.3169 -11.6739 0.4186 21 9 7.5141 -11.4450 1.0013 22 6 6.0985 -12.8536 -0.2732 23 6 4.8746 -13.0913 -0.8708 24 6 3.8648 -12.1509 -0.7798 25 9 2.6693 -12.3837 -1.3645 26 1 -0.4850 0.8399 -0.0004 27 1 3.1245 -3.7305 0.8928 28 1 3.1246 -3.7321 -0.8871 29 1 1.6447 -7.7988 -0.8846 30 1 1.6454 -7.7976 0.8954 31 1 2.1352 -10.2953 0.0734 32 1 5.4845 -9.8054 1.0444 33 1 6.8859 -13.5892 -0.3462 34 1 4.7071 -14.0124 -1.4092 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046257080.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:39 Heat of formation + Delta-G solvation = -174.724161 kcal Electronic energy + Delta-G solvation = -23945.981600 eV Core-core repulsion = 19606.971710 eV Total energy + Delta-G solvation = -4339.009890 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.052 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.45352 -49.33053 -41.08995 -40.09248 -38.67863 -36.26151 -35.34993 -32.51546 -31.44299 -30.58290 -29.89635 -28.06681 -25.58189 -24.21497 -23.07058 -21.46689 -21.02000 -19.11633 -18.27804 -18.00847 -17.73623 -17.32718 -17.16306 -16.76819 -16.44903 -16.30395 -15.80357 -15.59985 -15.25225 -14.87655 -14.87091 -14.53248 -14.18456 -14.03210 -13.77628 -13.51614 -13.08678 -12.72183 -12.60299 -12.58401 -12.16705 -12.03977 -11.11505 -11.11273 -11.05596 -10.84887 -10.81953 -10.37654 -10.17620 -9.92245 -9.35321 -9.15107 -8.79367 -8.41274 -6.64805 -6.30606 -4.03661 0.33207 0.48420 1.81858 1.97301 2.48509 2.75218 2.85801 3.18492 3.23152 3.28414 3.45922 3.55040 3.69192 3.99514 4.11769 4.13626 4.37839 4.57377 4.75574 4.76216 4.83961 5.02995 5.05717 5.24849 5.37469 5.43371 5.47544 5.58768 5.68174 5.72562 6.04168 6.27697 6.38963 6.62980 7.46665 7.53525 7.96633 8.28065 9.15407 10.76968 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.026794 B = 0.001953 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.768698 B =14335.785722 C =15217.737285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.922 3.078 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.078 0.922 9 S -0.058 6.058 10 C -0.127 4.127 11 C 0.483 3.517 12 O -0.485 6.485 13 O -0.337 6.337 14 C 0.050 3.950 15 C 0.520 3.480 16 O -0.488 6.488 17 N -0.670 5.670 18 C 0.150 3.850 19 C -0.134 4.134 20 C 0.113 3.887 21 F -0.129 7.129 22 C -0.141 4.141 23 C -0.105 4.105 24 C 0.063 3.937 25 F -0.131 7.131 26 H 0.269 0.731 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.420 0.580 32 H 0.164 0.836 33 H 0.148 0.852 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.765 -28.278 -0.154 29.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.748 3.252 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.096 0.904 9 S 0.169 5.831 10 C -0.275 4.275 11 C 0.324 3.676 12 O -0.370 6.370 13 O -0.254 6.254 14 C -0.028 4.028 15 C 0.307 3.693 16 O -0.360 6.360 17 N -0.318 5.318 18 C 0.054 3.946 19 C -0.155 4.155 20 C 0.093 3.907 21 F -0.108 7.108 22 C -0.161 4.161 23 C -0.124 4.124 24 C 0.041 3.959 25 F -0.110 7.110 26 H 0.079 0.921 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.258 0.742 32 H 0.182 0.818 33 H 0.166 0.834 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.914 -28.084 -0.163 29.179 hybrid contribution 1.235 0.985 -0.012 1.579 sum 9.149 -27.100 -0.175 28.603 Atomic orbital electron populations 1.70009 1.05989 1.27594 1.46655 1.25012 0.95083 0.99163 0.94283 0.86055 0.79654 0.81505 0.77950 1.19453 1.20487 1.20492 1.22885 0.95111 0.91009 1.59342 0.90421 1.85389 1.04152 0.96661 1.96922 1.23322 1.07180 0.90106 1.06895 1.23488 0.85081 0.86872 0.72136 1.90684 1.16745 1.85396 1.44210 1.86605 1.40407 1.13317 1.85075 1.22473 0.93595 0.80851 1.05844 1.20462 0.90761 0.82263 0.75818 1.90776 1.20357 1.79799 1.45021 1.43228 1.09954 1.04673 1.73927 1.17319 0.90339 0.88940 0.98001 1.21217 0.91529 1.01285 1.01442 1.17460 0.81758 0.94725 0.96735 1.91551 1.42562 1.94740 1.81937 1.21026 0.98412 0.97134 0.99499 1.20831 0.91490 0.99464 1.00597 1.17444 0.83269 0.95952 0.99193 1.91523 1.42816 1.94648 1.81981 0.92087 0.87569 0.87575 0.87385 0.87427 0.74217 0.81843 0.83411 0.83073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.47 13.22 55.49 0.73 -24.74 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.05 29.55 -169.99 -5.02 16.03 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.54 -14.86 9.50 30.94 0.29 -14.57 16 8 H 0.08 2.05 7.80 -52.49 -0.41 1.64 16 9 S -0.06 -1.50 20.58 -107.50 -2.21 -3.71 16 10 C -0.13 -2.54 6.27 36.01 0.23 -2.32 16 11 C 0.48 8.81 7.98 36.01 0.29 9.10 16 12 O -0.49 -9.81 15.61 -18.75 -0.29 -10.11 16 13 O -0.34 -5.24 9.76 -45.90 -0.45 -5.69 16 14 C 0.05 0.55 5.95 36.01 0.21 0.77 16 15 C 0.52 5.67 7.76 -10.99 -0.09 5.58 16 16 O -0.49 -7.14 13.92 -14.11 -0.20 -7.34 16 17 N -0.67 -5.32 5.23 -9.81 -0.05 -5.37 16 18 C 0.15 1.31 6.31 -83.60 -0.53 0.78 16 19 C -0.13 -1.29 8.68 -39.34 -0.34 -1.63 16 20 C 0.11 0.97 7.29 -39.45 -0.29 0.68 16 21 F -0.13 -1.25 17.27 2.25 0.04 -1.21 16 22 C -0.14 -0.85 10.02 -39.48 -0.40 -1.24 16 23 C -0.10 -0.59 10.02 -39.55 -0.40 -0.99 16 24 C 0.06 0.47 7.31 -39.26 -0.29 0.18 16 25 F -0.13 -1.00 16.96 2.25 0.04 -0.97 16 26 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.11 1.98 8.14 -51.92 -0.42 1.56 16 28 H 0.11 1.99 8.14 -51.92 -0.42 1.56 16 29 H 0.11 1.01 8.13 -51.93 -0.42 0.58 16 30 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.42 2.05 8.67 -40.82 -0.35 1.70 16 32 H 0.16 1.83 6.19 -52.49 -0.33 1.50 16 33 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 34 H 0.15 0.46 8.06 -52.49 -0.42 0.04 16 LS Contribution 335.61 15.07 5.06 5.06 Total: -1.00 -34.34 335.61 -6.51 -40.85 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -2.76 Total: -1.12 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -1.40 Total: -1.69 kcal Atomic # 7 Polarization: -30.80 SS G_CDS: 0.68 Total: -30.11 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.94 Total: -23.13 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.08 Total: -2.17 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.34 -6.51 -40.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046257080.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.870 kcal (2) G-P(sol) polarization free energy of solvation -34.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds