Wall clock time and date at job start Tue Mar 31 2020 16:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86805 * 120.00069 * 2 1 4 4 H 1.48497 * 109.47424 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46665 * 300.00013 * 3 2 1 6 6 H 1.48506 * 109.46922 * 59.99604 * 3 2 1 7 7 C 1.38803 * 120.00463 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00423 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99791 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00017 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47021 * 180.02562 * 10 9 7 12 12 O 1.20827 * 120.00038 * 0.02562 * 11 10 9 13 13 O 1.34230 * 119.99950 * 179.97438 * 11 10 9 14 14 C 1.45201 * 116.99920 * 179.97438 * 13 11 10 15 15 C 1.50707 * 109.47241 * 180.02562 * 14 13 11 16 16 O 1.21290 * 119.99654 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00315 * 179.97438 * 15 14 13 18 18 C 1.40039 * 120.00174 * 175.54340 * 17 15 14 19 19 C 1.38792 * 120.06128 * 34.64483 * 18 17 15 20 20 C 1.38342 * 119.92596 * 179.78831 * 19 18 17 21 21 F 1.35104 * 119.96819 * 180.22976 * 20 19 18 22 22 C 1.38489 * 120.06462 * 0.48889 * 20 19 18 23 23 C 1.38258 * 120.12765 * 359.74016 * 22 20 19 24 24 C 1.38296 * 120.06827 * 0.02826 * 23 22 20 25 25 F 1.35105 * 120.03019 * 179.97438 * 24 23 22 26 26 H 0.96991 * 120.00459 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47047 * 60.00255 * 10 9 7 28 28 H 1.08999 * 109.47464 * 300.00226 * 10 9 7 29 29 H 1.09002 * 109.47286 * 60.00407 * 14 13 11 30 30 H 1.09006 * 109.47366 * 300.00230 * 14 13 11 31 31 H 0.97005 * 120.00069 * 355.55197 * 17 15 14 32 32 H 1.07997 * 120.03944 * 359.97438 * 19 18 17 33 33 H 1.08000 * 119.93623 * 179.72285 * 22 20 19 34 34 H 1.07996 * 119.96354 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0019 10 6 2.5160 -3.8914 0.0029 11 6 1.9875 -5.3027 0.0036 12 8 0.7957 -5.5015 0.0029 13 8 2.8409 -6.3388 0.0039 14 6 2.2612 -7.6701 0.0050 15 6 3.3634 -8.6980 0.0059 16 8 4.5233 -8.3433 0.0059 17 7 3.0603 -10.0111 0.0075 18 6 4.0809 -10.9655 -0.0860 19 6 5.3121 -10.7273 0.5089 20 6 6.3169 -11.6739 0.4186 21 9 7.5141 -11.4450 1.0013 22 6 6.0985 -12.8536 -0.2732 23 6 4.8746 -13.0913 -0.8708 24 6 3.8648 -12.1509 -0.7798 25 9 2.6693 -12.3837 -1.3645 26 1 -0.4850 0.8399 -0.0004 27 1 3.1245 -3.7305 0.8928 28 1 3.1246 -3.7321 -0.8871 29 1 1.6447 -7.7988 -0.8846 30 1 1.6454 -7.7976 0.8954 31 1 2.1352 -10.2953 0.0734 32 1 5.4845 -9.8054 1.0444 33 1 6.8859 -13.5892 -0.3462 34 1 4.7071 -14.0124 -1.4092 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046257080.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:39 Heat of formation + Delta-G solvation = -195.878282 kcal Electronic energy + Delta-G solvation = -23946.898911 eV Core-core repulsion = 19606.971710 eV Total energy + Delta-G solvation = -4339.927201 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.052 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.04356 -50.01470 -42.03546 -41.29052 -39.41696 -37.58592 -36.13046 -34.61919 -32.28754 -31.54603 -30.89428 -29.04216 -27.69438 -24.87976 -23.72082 -22.65262 -21.97927 -19.99869 -19.81384 -18.91149 -18.57850 -18.54107 -18.12015 -17.77074 -17.33315 -17.03360 -16.90366 -16.69310 -16.44242 -16.30535 -16.02216 -15.44697 -15.35984 -14.95074 -14.79251 -14.57873 -14.20605 -13.86420 -13.77246 -13.59525 -13.23803 -13.18211 -12.92589 -12.67811 -12.65798 -12.00384 -11.80392 -11.75295 -11.72605 -11.18627 -11.18124 -10.40156 -9.97949 -9.41911 -8.73829 -8.38720 -6.17750 -0.27837 -0.10358 0.72207 1.02590 1.13961 1.33501 1.41537 1.47840 1.58570 2.05868 2.22745 2.27255 2.94929 2.96560 3.02231 3.25483 3.29013 3.55224 3.76572 3.86527 3.92734 3.99277 3.99673 4.15567 4.23420 4.43901 4.67030 4.87482 4.93480 4.98333 5.00312 5.06096 5.41371 5.68098 5.95557 6.17817 6.55566 6.70314 7.03707 8.70616 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.026794 B = 0.001953 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.768698 B =14335.785722 C =15217.737285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.017 3.983 3 Si 0.999 3.001 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.549 4.549 8 H 0.084 0.916 9 S -0.128 6.128 10 C -0.111 4.111 11 C 0.496 3.504 12 O -0.508 6.508 13 O -0.341 6.341 14 C 0.044 3.956 15 C 0.526 3.474 16 O -0.532 6.532 17 N -0.653 5.653 18 C 0.133 3.867 19 C -0.151 4.151 20 C 0.096 3.904 21 F -0.141 7.141 22 C -0.125 4.125 23 C -0.092 4.092 24 C 0.064 3.936 25 F -0.131 7.131 26 H 0.273 0.727 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.435 0.565 32 H 0.141 0.859 33 H 0.178 0.822 34 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.790 -30.046 -0.738 31.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.188 4.188 3 Si 0.820 3.180 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.697 4.697 8 H 0.102 0.898 9 S 0.099 5.901 10 C -0.259 4.259 11 C 0.338 3.662 12 O -0.396 6.396 13 O -0.257 6.257 14 C -0.033 4.033 15 C 0.314 3.686 16 O -0.406 6.406 17 N -0.302 5.302 18 C 0.037 3.963 19 C -0.172 4.172 20 C 0.076 3.924 21 F -0.119 7.119 22 C -0.145 4.145 23 C -0.111 4.111 24 C 0.042 3.958 25 F -0.109 7.109 26 H 0.082 0.918 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.276 0.724 32 H 0.158 0.842 33 H 0.196 0.804 34 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 8.924 -29.911 -0.745 31.223 hybrid contribution 0.954 1.297 0.160 1.618 sum 9.879 -28.614 -0.585 30.277 Atomic orbital electron populations 1.70146 1.07806 1.28765 1.47718 1.26087 0.96001 1.03182 0.93567 0.84904 0.78557 0.76342 0.78159 1.18279 1.19827 1.19834 1.23228 0.95514 0.91687 1.59252 0.89758 1.85415 1.08693 0.98793 1.97165 1.23103 1.04548 0.89955 1.08340 1.22928 0.84636 0.86920 0.71734 1.90677 1.17643 1.85771 1.45488 1.86532 1.40036 1.14702 1.84419 1.22868 0.93921 0.78361 1.08116 1.20412 0.89940 0.83062 0.75218 1.90773 1.21864 1.80590 1.47421 1.43015 1.10809 1.03637 1.72757 1.17408 0.90185 0.89656 0.99045 1.21100 0.92655 1.01053 1.02436 1.17703 0.81215 0.95709 0.97727 1.91520 1.43155 1.94940 1.82328 1.21352 0.99272 0.96278 0.97556 1.21229 0.90381 0.99936 0.99526 1.17564 0.83692 0.95709 0.98800 1.91529 1.42921 1.94586 1.81914 0.91793 0.86088 0.86137 0.85281 0.85043 0.72424 0.84171 0.80436 0.79672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.11 13.22 21.65 0.29 -53.83 16 2 C 0.02 0.94 5.49 84.86 0.47 1.41 16 3 Si 1.00 42.96 29.55 68.60 2.03 44.98 16 4 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 7 C -0.55 -30.63 9.50 67.96 0.65 -29.99 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 9 S -0.13 -6.77 20.58 -56.49 -1.16 -7.93 16 10 C -0.11 -4.40 6.27 71.24 0.45 -3.95 16 11 C 0.50 17.82 7.98 71.24 0.57 18.39 16 12 O -0.51 -20.43 15.61 21.96 0.34 -20.09 16 13 O -0.34 -10.31 9.76 -45.06 -0.44 -10.75 16 14 C 0.04 0.91 5.95 71.24 0.42 1.34 16 15 C 0.53 11.24 7.76 87.66 0.68 11.92 16 16 O -0.53 -15.88 13.92 15.74 0.22 -15.66 16 17 N -0.65 -9.79 5.23 -303.35 -1.59 -11.38 16 18 C 0.13 2.20 6.31 38.16 0.24 2.45 16 19 C -0.15 -2.97 8.68 22.43 0.19 -2.77 16 20 C 0.10 1.58 7.29 22.35 0.16 1.75 16 21 F -0.14 -2.72 17.27 44.97 0.78 -1.94 16 22 C -0.13 -1.17 10.02 22.33 0.22 -0.95 16 23 C -0.09 -0.73 10.02 22.29 0.22 -0.51 16 24 C 0.06 0.81 7.31 22.48 0.16 0.98 16 25 F -0.13 -1.68 16.96 44.97 0.76 -0.92 16 26 H 0.27 15.05 8.31 -92.72 -0.77 14.28 16 27 H 0.12 4.43 8.14 -2.40 -0.02 4.41 16 28 H 0.12 4.42 8.14 -2.40 -0.02 4.40 16 29 H 0.13 2.17 8.13 -2.39 -0.02 2.15 16 30 H 0.13 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.44 3.57 8.67 -92.70 -0.80 2.76 16 32 H 0.14 3.40 6.19 -2.91 -0.02 3.38 16 33 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 34 H 0.19 0.24 8.06 -2.91 -0.02 0.22 16 Total: -1.00 -76.04 335.61 6.05 -69.99 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 0.38 Total: 7.47 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: 4.44 Total: 0.05 kcal Atomic # 7 Polarization: -63.90 SS G_CDS: -1.30 Total: -65.20 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: 0.12 Total: -46.50 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 1.54 Total: -2.86 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: -6.77 SS G_CDS: -1.16 Total: -7.93 kcal Total: -76.04 6.05 -69.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046257080.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.889 kcal (2) G-P(sol) polarization free energy of solvation -76.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds