Wall clock time and date at job start Tue Mar 31 2020 16:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34747 * 116.99745 * 2 1 4 4 O 1.21503 * 120.00364 * 359.97438 * 3 2 1 5 5 C 1.47452 * 119.99599 * 179.97438 * 3 2 1 6 6 C 1.39770 * 120.12016 * 359.97438 * 5 3 2 7 7 C 1.38289 * 119.82545 * 180.02562 * 6 5 3 8 8 N 1.40166 * 119.97183 * 179.97438 * 7 6 5 9 9 C 1.34785 * 119.99951 * 325.31653 * 8 7 6 10 10 O 1.21293 * 119.99739 * 4.46969 * 9 8 7 11 11 C 1.50694 * 119.99992 * 184.47602 * 9 8 7 12 12 S 1.80998 * 109.46922 * 179.97438 * 11 9 8 13 13 C 1.76208 * 100.00191 * 179.97438 * 12 11 9 14 14 H 1.07995 * 119.99474 * 0.02562 * 13 12 11 15 15 C 1.38797 * 120.00233 * 180.02562 * 13 12 11 16 16 N 1.31627 * 120.00024 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99751 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47407 * 90.00270 * 17 15 13 19 19 H 1.48507 * 109.47228 * 209.99911 * 17 15 13 20 20 H 1.48496 * 109.47425 * 329.99768 * 17 15 13 21 21 C 1.39339 * 120.06261 * 359.72600 * 7 6 5 22 22 F 1.35106 * 119.88110 * 180.27920 * 21 7 6 23 23 C 1.38359 * 120.23849 * 0.54672 * 21 7 6 24 24 C 1.38241 * 120.17478 * 359.45706 * 23 21 7 25 25 F 1.35104 * 120.03439 * 180.29871 * 24 23 21 26 26 H 1.08998 * 109.47017 * 300.00368 * 1 2 3 27 27 H 1.08997 * 109.46677 * 60.00612 * 1 2 3 28 28 H 1.08994 * 109.47023 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.08468 * 359.97438 * 6 5 3 30 30 H 0.96994 * 120.00668 * 145.30618 * 8 7 6 31 31 H 1.09002 * 109.47244 * 299.99673 * 11 9 8 32 32 H 1.09003 * 109.47172 * 59.99939 * 11 9 8 33 33 H 0.96999 * 119.99920 * 180.02562 * 16 15 13 34 34 H 1.08000 * 119.91593 * 179.72207 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2196 -0.0005 5 6 3.5363 1.2778 0.0006 6 6 4.2999 0.1071 0.0017 7 6 5.6805 0.1866 0.0027 8 7 6.4494 -0.9854 0.0044 9 6 6.0159 -2.0748 0.6692 10 8 4.9242 -2.0682 1.1977 11 6 6.8876 -3.3010 0.7558 12 16 6.0332 -4.5826 1.7064 13 6 7.2427 -5.8628 1.6501 14 1 8.1750 -5.7023 1.1292 15 6 6.9972 -7.0775 2.2753 16 7 7.9009 -8.0336 2.2337 17 14 5.3843 -7.3553 3.1757 18 1 4.3832 -7.9198 2.2354 19 1 5.6005 -8.3046 4.2971 20 1 4.8870 -6.0624 3.7107 21 6 6.3081 1.4306 -0.0031 22 9 7.6572 1.5039 -0.0077 23 6 5.5548 2.5911 0.0015 24 6 4.1740 2.5232 0.0006 25 9 3.4412 3.6582 -0.0011 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5137 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.8130 -0.8569 0.0025 30 1 7.2933 -1.0126 -0.4730 31 1 7.0955 -3.6707 -0.2483 32 1 7.8249 -3.0463 1.2505 33 1 7.7292 -8.8826 2.6702 34 1 6.0466 3.5526 0.0016 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000047905169.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:26 Heat of formation + Delta-G solvation = -195.236470 kcal Electronic energy + Delta-G solvation = -24968.985973 eV Core-core repulsion = 20629.086603 eV Total energy + Delta-G solvation = -4339.899370 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.052 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.29768 -50.20811 -41.90646 -41.31065 -39.36960 -37.61476 -35.99012 -34.65629 -32.74622 -32.01710 -29.62767 -28.68977 -27.83558 -25.56015 -24.61432 -22.63739 -21.80409 -20.24416 -19.60651 -19.37272 -18.71910 -18.23543 -17.90509 -17.70359 -17.57861 -17.10360 -17.06939 -16.67745 -16.44506 -16.06321 -15.79336 -15.70644 -15.37284 -15.02688 -14.82323 -14.54682 -14.43615 -13.98659 -13.71929 -13.42330 -13.32823 -13.18683 -13.04599 -13.00044 -12.67554 -11.89859 -11.89087 -11.86498 -11.62193 -11.15480 -11.14380 -10.53661 -10.38761 -9.46815 -8.97897 -8.50021 -6.20853 -0.93272 -0.32201 0.92417 1.01098 1.33409 1.36556 1.43785 1.49395 1.53244 1.90647 2.16558 2.25816 2.48433 2.67595 2.88834 2.89290 3.18540 3.40955 3.58876 3.80930 4.01285 4.21167 4.23203 4.30113 4.33347 4.43686 4.48302 4.57553 4.67416 4.76105 4.96439 5.14551 5.42610 5.72268 6.08436 6.14288 6.46349 6.86411 6.95411 8.62261 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.014990 B = 0.003176 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.413721 B = 8814.120920 C =10493.405912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.511 3.489 4 O -0.519 6.519 5 C -0.167 4.167 6 C -0.016 4.016 7 C 0.095 3.905 8 N -0.654 5.654 9 C 0.542 3.458 10 O -0.527 6.527 11 C -0.112 4.112 12 S -0.167 6.167 13 C -0.529 4.529 14 H 0.065 0.935 15 C 0.046 3.954 16 N -0.918 5.918 17 Si 0.912 3.088 18 H -0.262 1.262 19 H -0.263 1.263 20 H -0.234 1.234 21 C 0.156 3.844 22 F -0.111 7.111 23 C -0.163 4.163 24 C 0.174 3.826 25 F -0.114 7.114 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.129 0.871 29 H 0.161 0.839 30 H 0.434 0.566 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.276 0.724 34 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.415 22.027 -7.673 24.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.273 6.273 3 C 0.357 3.643 4 O -0.410 6.410 5 C -0.170 4.170 6 C -0.037 4.037 7 C -0.002 4.002 8 N -0.302 5.302 9 C 0.329 3.671 10 O -0.402 6.402 11 C -0.262 4.262 12 S 0.060 5.940 13 C -0.676 4.676 14 H 0.083 0.917 15 C -0.160 4.160 16 N -0.556 5.556 17 Si 0.734 3.266 18 H -0.186 1.186 19 H -0.187 1.187 20 H -0.158 1.158 21 C 0.134 3.866 22 F -0.089 7.089 23 C -0.183 4.183 24 C 0.153 3.847 25 F -0.092 7.092 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.147 0.853 29 H 0.179 0.821 30 H 0.275 0.725 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.086 0.914 34 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -8.319 22.102 -6.736 24.557 hybrid contribution 1.227 -0.528 -0.413 1.399 sum -7.092 21.573 -7.148 23.808 Atomic orbital electron populations 1.23636 0.73715 1.05930 1.03055 1.86605 1.25752 1.31358 1.83551 1.20869 0.88782 0.81919 0.72715 1.90879 1.67023 1.36396 1.46683 1.19073 0.90377 0.93429 1.14112 1.21312 0.91532 0.98942 0.91913 1.17631 0.90941 0.85672 1.05920 1.43183 1.25417 1.09190 1.52460 1.20202 0.86558 0.83713 0.76582 1.90729 1.21938 1.81952 1.45605 1.23248 1.02301 0.94369 1.06318 1.84726 1.27691 1.10936 1.70655 1.22469 1.04465 1.00430 1.40279 0.91678 1.25549 1.00071 0.94599 0.95753 1.70014 1.36119 1.05557 1.43889 0.85894 0.79976 0.80912 0.79770 1.18637 1.18742 1.15790 1.17182 0.77646 0.91533 1.00285 1.91598 1.27328 1.96903 1.93081 1.20993 0.90614 1.00528 1.06122 1.17267 0.88918 0.80520 0.97991 1.91615 1.77088 1.47795 1.92725 0.91527 0.91012 0.85251 0.82134 0.72538 0.85717 0.86008 0.91417 0.78581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.57 113.37 1.20 1.70 16 2 O -0.36 -8.71 9.81 -56.57 -0.56 -9.26 16 3 C 0.51 13.35 7.89 70.25 0.55 13.91 16 4 O -0.52 -15.34 15.12 19.83 0.30 -15.04 16 5 C -0.17 -3.85 5.88 -20.07 -0.12 -3.97 16 6 C -0.02 -0.38 8.26 22.65 0.19 -0.20 16 7 C 0.09 1.90 6.31 38.08 0.24 2.14 16 8 N -0.65 -13.14 5.23 -303.39 -1.59 -14.73 16 9 C 0.54 15.68 7.69 87.65 0.67 16.36 16 10 O -0.53 -19.01 13.28 -3.07 -0.04 -19.06 16 11 C -0.11 -3.61 6.16 71.23 0.44 -3.18 16 12 S -0.17 -7.72 18.55 -56.49 -1.05 -8.76 16 13 C -0.53 -29.14 10.04 67.95 0.68 -28.45 16 14 H 0.07 3.78 8.03 -2.91 -0.02 3.76 16 15 C 0.05 2.58 5.50 84.86 0.47 3.05 16 16 N -0.92 -54.35 13.97 21.65 0.30 -54.05 16 17 Si 0.91 43.15 27.74 68.60 1.90 45.05 16 18 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 19 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 20 H -0.23 -10.94 6.74 99.48 0.67 -10.27 16 21 C 0.16 2.44 7.31 22.56 0.16 2.61 16 22 F -0.11 -1.60 16.94 44.97 0.76 -0.84 16 23 C -0.16 -2.25 9.98 22.30 0.22 -2.03 16 24 C 0.17 3.40 7.28 22.68 0.17 3.57 16 25 F -0.11 -2.56 15.53 44.97 0.70 -1.86 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.16 4.40 5.73 -2.91 -0.02 4.38 16 30 H 0.43 5.80 8.65 -92.71 -0.80 5.00 16 31 H 0.12 3.57 8.14 -2.39 -0.02 3.55 16 32 H 0.12 3.57 8.14 -2.39 -0.02 3.55 16 33 H 0.28 15.18 8.31 -92.71 -0.77 14.41 16 34 H 0.20 1.43 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -72.00 329.46 5.96 -66.04 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 0.35 Total: 7.01 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 4.88 Total: 5.50 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: -1.28 Total: -68.78 kcal Atomic # 8 Polarization: -43.06 SS G_CDS: -0.30 Total: -43.36 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 1.46 Total: -2.70 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.90 Total: 45.05 kcal Atomic # 16 Polarization: -7.72 SS G_CDS: -1.05 Total: -8.76 kcal Total: -72.00 5.96 -66.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047905169.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.197 kcal (2) G-P(sol) polarization free energy of solvation -72.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds