Wall clock time and date at job start Tue Mar 31 2020 15:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35922 * 116.99711 * 2 1 4 4 C 1.38748 * 120.04285 * 0.02562 * 3 2 1 5 5 C 1.38116 * 119.95808 * 179.97438 * 4 3 2 6 6 C 1.38390 * 120.04484 * 359.97438 * 5 4 3 7 7 Cl 1.73599 * 119.96074 * 180.27315 * 6 5 4 8 8 C 1.38347 * 120.08060 * 359.97438 * 6 5 4 9 9 C 1.38164 * 120.04539 * 0.02562 * 8 6 5 10 10 S 1.76203 * 120.02358 * 179.97438 * 9 8 6 11 11 O 1.42095 * 106.40259 * 228.54053 * 10 9 8 12 12 O 1.42102 * 106.39871 * 1.46365 * 10 9 8 13 13 N 1.65598 * 107.21521 * 114.99836 * 10 9 8 14 14 C 1.36938 * 119.99953 * 90.00337 * 13 10 9 15 15 H 1.07999 * 119.99773 * 231.16480 * 14 13 10 16 16 C 1.38810 * 119.99951 * 51.16420 * 14 13 10 17 17 N 1.31621 * 120.00134 * 20.03504 * 16 14 13 18 18 Si 1.86805 * 120.00131 * 200.03048 * 16 14 13 19 19 H 1.48503 * 109.46769 * 60.00223 * 18 16 14 20 20 H 1.48501 * 109.47116 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47151 * 300.00408 * 18 16 14 22 22 C 1.46503 * 120.00170 * 270.00154 * 13 10 9 23 23 C 1.53006 * 117.49794 * 189.41432 * 22 13 10 24 24 C 1.52998 * 117.50079 * 120.75481 * 22 13 10 25 25 H 1.09009 * 109.46902 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47299 * 299.99713 * 1 2 3 27 27 H 1.08995 * 109.47734 * 60.00292 * 1 2 3 28 28 H 1.08000 * 120.01910 * 359.96119 * 4 3 2 29 29 H 1.08004 * 119.98074 * 179.97438 * 5 4 3 30 30 H 1.08003 * 119.97579 * 179.97438 * 8 6 5 31 31 H 0.97000 * 120.00548 * 174.32793 * 17 16 14 32 32 H 1.08997 * 115.54656 * 335.08179 * 22 13 10 33 33 H 1.08996 * 117.49871 * 359.97438 * 23 22 13 34 34 H 1.09005 * 117.49663 * 145.02062 * 23 22 13 35 35 H 1.09000 * 117.50015 * 214.97980 * 24 22 13 36 36 H 1.09004 * 117.49317 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2912 2.3753 0.0005 5 6 1.9200 3.6050 0.0011 6 6 3.3020 3.6765 0.0016 7 17 4.0901 5.2233 0.0094 8 6 4.0564 2.5168 0.0021 9 6 3.4310 1.2848 0.0016 10 16 4.3924 -0.1919 0.0016 11 8 3.8553 -1.0203 -1.0203 12 8 5.7533 0.2154 0.0370 13 7 4.0991 -0.9676 1.4349 14 6 3.0772 -1.8748 1.5259 15 1 2.3509 -1.7920 2.3208 16 6 2.9751 -2.9006 0.5964 17 7 4.0260 -3.2523 -0.1138 18 14 1.3461 -3.7821 0.3534 19 1 0.3137 -2.8049 -0.0760 20 1 1.5003 -4.8287 -0.6889 21 1 0.9293 -4.4131 1.6314 22 6 4.9327 -0.6836 2.6057 23 6 4.7599 -1.5833 3.8311 24 6 4.2346 -0.1458 3.8564 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 0.2126 2.3199 0.0003 29 1 1.3327 4.5114 0.0011 30 1 5.1349 2.5746 0.0021 31 1 3.9780 -4.0214 -0.7030 32 1 5.9351 -0.3135 2.3903 33 1 4.0257 -2.3863 3.7663 34 1 5.6486 -1.8048 4.4222 35 1 4.7778 0.5779 4.4641 36 1 3.1551 -0.0029 3.8079 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057629833.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:56 Heat of formation + Delta-G solvation = -41.826117 kcal Electronic energy + Delta-G solvation = -25585.642489 eV Core-core repulsion = 21804.192171 eV Total energy + Delta-G solvation = -3781.450318 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.78578 -37.40312 -37.10810 -35.94758 -35.44594 -34.00922 -33.20143 -31.07309 -30.55746 -29.60559 -26.97623 -24.89362 -22.92635 -21.91473 -21.55183 -20.50693 -18.82900 -18.32189 -17.01938 -16.19682 -16.06177 -15.80338 -15.46718 -14.99659 -14.70800 -14.29265 -14.04409 -13.90772 -13.69734 -13.24173 -13.05561 -12.44409 -12.34041 -11.77415 -11.75111 -11.64210 -11.35051 -11.24825 -10.93938 -10.88660 -10.73378 -10.58291 -10.44711 -10.34046 -10.30758 -10.17671 -9.93044 -9.53782 -9.31741 -9.03798 -8.60653 -7.90194 -7.44731 -6.46132 -4.08949 1.19316 1.50663 2.03341 2.36052 3.18087 3.19710 3.26354 3.62001 3.70117 4.13796 4.60292 4.75241 4.88273 4.98937 5.02253 5.19949 5.40241 5.40352 5.47213 5.74168 5.76427 5.81830 5.82229 5.87578 5.89454 6.05002 6.27673 6.32325 6.33301 6.41061 6.58413 6.76494 6.85835 7.02217 7.42606 7.56886 7.62993 8.24092 8.95199 9.37119 10.60264 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.014258 B = 0.006196 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.317450 B = 4517.944797 C = 5275.001676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.266 6.266 3 C 0.229 3.771 4 C -0.229 4.229 5 C -0.042 4.042 6 C -0.102 4.102 7 Cl -0.084 7.084 8 C 0.012 3.988 9 C -0.685 4.685 10 S 2.563 3.437 11 O -0.929 6.929 12 O -1.018 7.018 13 N -0.782 5.782 14 C -0.257 4.257 15 H 0.077 0.923 16 C 0.065 3.935 17 N -0.779 5.779 18 Si 0.923 3.077 19 H -0.263 1.263 20 H -0.284 1.284 21 H -0.276 1.276 22 C 0.098 3.902 23 C -0.163 4.163 24 C -0.213 4.213 25 H 0.107 0.893 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.135 0.865 29 H 0.131 0.869 30 H 0.147 0.853 31 H 0.279 0.721 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.626 7.660 3.499 10.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.176 6.176 3 C 0.180 3.820 4 C -0.248 4.248 5 C -0.061 4.061 6 C -0.129 4.129 7 Cl -0.056 7.056 8 C -0.008 4.008 9 C -0.760 4.760 10 S 2.661 3.339 11 O -0.917 6.917 12 O -1.007 7.007 13 N -0.604 5.604 14 C -0.405 4.405 15 H 0.095 0.905 16 C -0.153 4.153 17 N -0.415 5.415 18 Si 0.750 3.250 19 H -0.189 1.189 20 H -0.209 1.209 21 H -0.202 1.202 22 C -0.012 4.012 23 C -0.202 4.202 24 C -0.254 4.254 25 H 0.125 0.875 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.153 0.847 29 H 0.149 0.851 30 H 0.165 0.835 31 H 0.090 0.910 32 H 0.136 0.864 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.793 7.568 2.441 9.839 hybrid contribution -1.488 0.632 -0.048 1.618 sum -7.281 8.201 2.393 11.225 Atomic orbital electron populations 1.23255 0.79106 1.04769 1.00543 1.86551 1.20666 1.24553 1.85847 1.18516 0.90933 0.84960 0.87568 1.21237 1.00143 0.91913 1.11509 1.20823 0.92305 0.97762 0.95174 1.20824 0.92939 0.86264 1.12909 1.98323 1.80940 1.28842 1.97490 1.20679 1.00470 0.88851 0.90764 1.31897 1.05566 1.22404 1.16084 1.10903 0.74065 0.71976 0.76988 1.93449 1.79010 1.62298 1.56902 1.93278 1.35762 1.83805 1.87857 1.52361 1.39563 1.43533 1.24929 1.18779 1.04751 1.02794 1.14218 0.90548 1.25646 0.97822 0.96108 0.95719 1.69766 1.29171 1.21921 1.20672 0.86136 0.82464 0.78537 0.77847 1.18853 1.20927 1.20154 1.21392 0.94309 1.03012 0.82446 1.23074 1.02807 0.94034 1.00329 1.23329 1.00939 0.97085 1.04005 0.87501 0.92755 0.93063 0.84686 0.85115 0.83524 0.91005 0.86381 0.87364 0.89864 0.89911 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 101.05 0.99 1.26 16 2 O -0.27 -5.32 7.81 -29.26 -0.23 -5.55 16 3 C 0.23 4.50 6.63 -39.22 -0.26 4.24 16 4 C -0.23 -3.60 9.04 -39.44 -0.36 -3.96 16 5 C -0.04 -0.62 9.82 -39.57 -0.39 -1.01 16 6 C -0.10 -1.71 6.32 -39.49 -0.25 -1.96 16 7 Cl -0.08 -1.23 28.95 -51.86 -1.50 -2.73 16 8 C 0.01 0.23 9.33 -39.57 -0.37 -0.14 16 9 C -0.68 -14.81 5.92 -39.44 -0.23 -15.04 16 10 S 2.56 64.85 5.02 -107.50 -0.54 64.31 16 11 O -0.93 -26.16 13.36 -62.50 -0.84 -26.99 16 12 O -1.02 -27.17 15.75 -57.17 -0.90 -28.07 16 13 N -0.78 -18.64 3.03 -53.42 -0.16 -18.80 16 14 C -0.26 -6.13 6.14 -15.06 -0.09 -6.22 16 15 H 0.08 1.72 7.83 -52.49 -0.41 1.30 16 16 C 0.07 1.61 4.19 -17.43 -0.07 1.54 16 17 N -0.78 -21.15 11.37 55.49 0.63 -20.52 16 18 Si 0.92 19.14 29.60 -169.99 -5.03 14.11 16 19 H -0.26 -5.04 5.23 56.52 0.30 -4.75 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 22 C 0.10 2.04 6.39 -67.93 -0.43 1.61 16 23 C -0.16 -2.93 9.85 -26.69 -0.26 -3.20 16 24 C -0.21 -3.71 10.26 -26.69 -0.27 -3.98 16 25 H 0.11 1.52 6.27 -51.92 -0.33 1.19 16 26 H 0.05 0.65 7.66 -51.93 -0.40 0.25 16 27 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 28 H 0.14 1.67 6.30 -52.49 -0.33 1.34 16 29 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 30 H 0.15 2.84 7.33 -52.48 -0.38 2.46 16 31 H 0.28 7.19 8.32 -40.82 -0.34 6.85 16 32 H 0.12 2.47 7.36 -51.93 -0.38 2.08 16 33 H 0.11 2.05 7.06 -51.93 -0.37 1.69 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 326.33 15.07 4.92 4.92 Total: -1.00 -30.63 326.33 -9.58 -40.21 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -3.93 Total: 5.99 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: -2.00 Total: -26.87 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.47 Total: -39.32 kcal Atomic # 8 Polarization: -58.65 SS G_CDS: -1.96 Total: -60.62 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Atomic # 16 Polarization: 64.85 SS G_CDS: -0.54 Total: 64.31 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -1.50 Total: -2.73 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.63 -9.58 -40.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057629833.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.615 kcal (2) G-P(sol) polarization free energy of solvation -30.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds