Wall clock time and date at job start Tue Mar 31 2020 15:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35922 * 116.99711 * 2 1 4 4 C 1.38748 * 120.04285 * 0.02562 * 3 2 1 5 5 C 1.38116 * 119.95808 * 179.97438 * 4 3 2 6 6 C 1.38390 * 120.04484 * 359.97438 * 5 4 3 7 7 Cl 1.73599 * 119.96074 * 180.27315 * 6 5 4 8 8 C 1.38347 * 120.08060 * 359.97438 * 6 5 4 9 9 C 1.38164 * 120.04539 * 0.02562 * 8 6 5 10 10 S 1.76203 * 120.02358 * 179.97438 * 9 8 6 11 11 O 1.42095 * 106.40259 * 228.54053 * 10 9 8 12 12 O 1.42102 * 106.39871 * 1.46365 * 10 9 8 13 13 N 1.65598 * 107.21521 * 114.99836 * 10 9 8 14 14 C 1.36938 * 119.99953 * 90.00337 * 13 10 9 15 15 H 1.07999 * 119.99773 * 231.16480 * 14 13 10 16 16 C 1.38810 * 119.99951 * 51.16420 * 14 13 10 17 17 N 1.31621 * 120.00134 * 20.03504 * 16 14 13 18 18 Si 1.86805 * 120.00131 * 200.03048 * 16 14 13 19 19 H 1.48503 * 109.46769 * 60.00223 * 18 16 14 20 20 H 1.48501 * 109.47116 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47151 * 300.00408 * 18 16 14 22 22 C 1.46503 * 120.00170 * 270.00154 * 13 10 9 23 23 C 1.53006 * 117.49794 * 189.41432 * 22 13 10 24 24 C 1.52998 * 117.50079 * 120.75481 * 22 13 10 25 25 H 1.09009 * 109.46902 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47299 * 299.99713 * 1 2 3 27 27 H 1.08995 * 109.47734 * 60.00292 * 1 2 3 28 28 H 1.08000 * 120.01910 * 359.96119 * 4 3 2 29 29 H 1.08004 * 119.98074 * 179.97438 * 5 4 3 30 30 H 1.08003 * 119.97579 * 179.97438 * 8 6 5 31 31 H 0.97000 * 120.00548 * 174.32793 * 17 16 14 32 32 H 1.08997 * 115.54656 * 335.08179 * 22 13 10 33 33 H 1.08996 * 117.49871 * 359.97438 * 23 22 13 34 34 H 1.09005 * 117.49663 * 145.02062 * 23 22 13 35 35 H 1.09000 * 117.50015 * 214.97980 * 24 22 13 36 36 H 1.09004 * 117.49317 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2912 2.3753 0.0005 5 6 1.9200 3.6050 0.0011 6 6 3.3020 3.6765 0.0016 7 17 4.0901 5.2233 0.0094 8 6 4.0564 2.5168 0.0021 9 6 3.4310 1.2848 0.0016 10 16 4.3924 -0.1919 0.0016 11 8 3.8553 -1.0203 -1.0203 12 8 5.7533 0.2154 0.0370 13 7 4.0991 -0.9676 1.4349 14 6 3.0772 -1.8748 1.5259 15 1 2.3509 -1.7920 2.3208 16 6 2.9751 -2.9006 0.5964 17 7 4.0260 -3.2523 -0.1138 18 14 1.3461 -3.7821 0.3534 19 1 0.3137 -2.8049 -0.0760 20 1 1.5003 -4.8287 -0.6889 21 1 0.9293 -4.4131 1.6314 22 6 4.9327 -0.6836 2.6057 23 6 4.7599 -1.5833 3.8311 24 6 4.2346 -0.1458 3.8564 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 0.2126 2.3199 0.0003 29 1 1.3327 4.5114 0.0011 30 1 5.1349 2.5746 0.0021 31 1 3.9780 -4.0214 -0.7030 32 1 5.9351 -0.3135 2.3903 33 1 4.0257 -2.3863 3.7663 34 1 5.6486 -1.8048 4.4222 35 1 4.7778 0.5779 4.4641 36 1 3.1551 -0.0029 3.8079 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057629833.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:55 Heat of formation + Delta-G solvation = -61.536057 kcal Electronic energy + Delta-G solvation = -25586.497176 eV Core-core repulsion = 21804.192171 eV Total energy + Delta-G solvation = -3782.305005 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.12687 -38.77328 -38.67197 -37.47808 -37.13971 -36.00363 -34.98112 -32.45948 -32.31090 -30.93448 -28.13314 -26.72281 -24.32763 -23.24751 -22.97578 -22.15711 -20.64686 -19.78184 -18.58311 -17.77353 -17.68221 -17.33787 -17.01459 -16.55229 -16.15747 -15.92465 -15.46019 -15.43963 -15.17968 -14.82688 -14.39304 -14.01760 -13.68507 -13.48377 -13.11953 -13.01306 -12.87686 -12.77882 -12.59853 -12.41402 -12.26010 -12.13240 -12.11465 -12.01799 -11.94828 -11.65925 -11.56619 -11.17634 -10.91277 -10.47481 -10.35021 -9.25707 -9.17483 -8.30420 -5.97385 -0.19539 0.15106 0.22865 1.08394 1.51256 1.58168 1.64250 2.28876 2.35768 2.46480 2.89685 3.15387 3.25558 3.52116 3.69119 3.80553 3.98495 4.19618 4.29615 4.33224 4.41255 4.43040 4.44108 4.50041 4.57629 4.76260 4.81491 4.94880 4.96693 5.02876 5.06538 5.29620 5.49977 5.54823 5.57647 5.88400 6.35647 6.37496 7.14272 7.55925 8.76204 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.014258 B = 0.006196 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.317450 B = 4517.944797 C = 5275.001676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.302 6.302 3 C 0.216 3.784 4 C -0.215 4.215 5 C -0.025 4.025 6 C -0.104 4.104 7 Cl -0.064 7.064 8 C -0.006 4.006 9 C -0.716 4.716 10 S 2.564 3.436 11 O -0.971 6.971 12 O -1.051 7.051 13 N -0.793 5.793 14 C -0.250 4.250 15 H 0.090 0.910 16 C 0.021 3.979 17 N -0.831 5.831 18 Si 0.968 3.032 19 H -0.239 1.239 20 H -0.298 1.298 21 H -0.254 1.254 22 C 0.053 3.947 23 C -0.152 4.152 24 C -0.183 4.183 25 H 0.106 0.894 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.178 0.822 29 H 0.176 0.824 30 H 0.132 0.868 31 H 0.274 0.726 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.844 9.829 5.100 14.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.213 6.213 3 C 0.167 3.833 4 C -0.234 4.234 5 C -0.043 4.043 6 C -0.132 4.132 7 Cl -0.035 7.035 8 C -0.026 4.026 9 C -0.796 4.796 10 S 2.667 3.333 11 O -0.959 6.959 12 O -1.041 7.041 13 N -0.615 5.615 14 C -0.398 4.398 15 H 0.107 0.893 16 C -0.192 4.192 17 N -0.469 5.469 18 Si 0.791 3.209 19 H -0.163 1.163 20 H -0.224 1.224 21 H -0.178 1.178 22 C -0.055 4.055 23 C -0.191 4.191 24 C -0.223 4.223 25 H 0.124 0.876 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.195 0.805 29 H 0.193 0.807 30 H 0.150 0.850 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.993 9.710 4.082 13.850 hybrid contribution -0.500 0.146 -0.519 0.735 sum -9.492 9.856 3.563 14.140 Atomic orbital electron populations 1.23600 0.76559 1.05665 1.03125 1.86491 1.23518 1.25320 1.85942 1.18692 0.90408 0.86269 0.87936 1.21658 1.01967 0.90495 1.09240 1.21351 0.91561 0.99236 0.92191 1.20913 0.93869 0.86249 1.12136 1.98331 1.80881 1.26943 1.97366 1.20611 1.00146 0.89643 0.92195 1.31270 1.06802 1.21374 1.20179 1.10295 0.73510 0.72546 0.76947 1.93384 1.79508 1.64416 1.58614 1.93211 1.38023 1.84549 1.88318 1.52232 1.40184 1.43898 1.25216 1.19029 1.04772 1.01982 1.14022 0.89265 1.26572 1.00510 0.96908 0.95210 1.69900 1.31644 1.22947 1.22409 0.85452 0.79380 0.77764 0.78312 1.16259 1.22405 1.17819 1.21587 0.94342 1.06739 0.82867 1.23142 1.03540 0.94106 0.98281 1.23345 1.00883 0.97175 1.00853 0.87599 0.89780 0.90748 0.80474 0.80687 0.84996 0.91668 0.87685 0.88430 0.87267 0.87062 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.11 9.81 113.37 1.11 1.22 16 2 O -0.30 -11.66 7.81 -83.34 -0.65 -12.31 16 3 C 0.22 8.16 6.63 22.50 0.15 8.30 16 4 C -0.21 -5.87 9.04 22.36 0.20 -5.67 16 5 C -0.02 -0.64 9.82 22.28 0.22 -0.42 16 6 C -0.10 -3.27 6.32 22.33 0.14 -3.13 16 7 Cl -0.06 -1.71 28.95 -2.72 -0.08 -1.78 16 8 C -0.01 -0.24 9.33 22.28 0.21 -0.03 16 9 C -0.72 -31.39 5.92 22.36 0.13 -31.26 16 10 S 2.56 136.19 5.02 -56.49 -0.28 135.91 16 11 O -0.97 -57.72 13.36 -122.91 -1.64 -59.36 16 12 O -1.05 -59.98 15.75 -128.00 -2.02 -62.00 16 13 N -0.79 -38.92 3.03 -322.93 -0.98 -39.90 16 14 C -0.25 -12.06 6.14 84.03 0.52 -11.54 16 15 H 0.09 3.95 7.83 -2.91 -0.02 3.93 16 16 C 0.02 1.07 4.19 84.86 0.36 1.43 16 17 N -0.83 -47.44 11.37 21.65 0.25 -47.19 16 18 Si 0.97 38.84 29.60 68.60 2.03 40.87 16 19 H -0.24 -8.50 5.23 99.48 0.52 -7.98 16 20 H -0.30 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 22 C 0.05 2.26 6.39 44.99 0.29 2.55 16 23 C -0.15 -5.30 9.85 30.62 0.30 -5.00 16 24 C -0.18 -6.05 10.26 30.62 0.31 -5.73 16 25 H 0.11 2.69 6.27 -2.38 -0.01 2.67 16 26 H 0.08 1.61 7.66 -2.39 -0.02 1.60 16 27 H 0.07 1.53 7.66 -2.39 -0.02 1.51 16 28 H 0.18 3.28 6.30 -2.91 -0.02 3.26 16 29 H 0.18 2.95 8.06 -2.91 -0.02 2.93 16 30 H 0.13 5.40 7.33 -2.91 -0.02 5.38 16 31 H 0.27 15.00 8.32 -92.71 -0.77 14.22 16 32 H 0.11 4.63 7.36 -2.39 -0.02 4.61 16 33 H 0.10 3.63 7.06 -2.39 -0.02 3.62 16 34 H 0.11 3.20 8.14 -2.38 -0.02 3.18 16 35 H 0.11 3.03 8.14 -2.39 -0.02 3.02 16 36 H 0.09 2.99 8.14 -2.38 -0.02 2.97 16 Total: -1.00 -71.92 326.33 1.50 -70.42 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.93 Total: 24.61 kcal Atomic # 6 Polarization: -53.21 SS G_CDS: 3.94 Total: -49.27 kcal Atomic # 7 Polarization: -86.35 SS G_CDS: -0.73 Total: -87.09 kcal Atomic # 8 Polarization: -129.36 SS G_CDS: -4.31 Total: -133.67 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Atomic # 16 Polarization: 136.19 SS G_CDS: -0.28 Total: 135.91 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.08 Total: -1.78 kcal Total: -71.92 1.50 -70.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057629833.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.881 kcal (2) G-P(sol) polarization free energy of solvation -71.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds