Wall clock time and date at job start Tue Mar 31 2020 17:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.34968 * 117.00272 * 2 1 4 4 O 1.21697 * 120.00033 * 359.97438 * 3 2 1 5 5 C 1.41533 * 119.99972 * 180.02562 * 3 2 1 6 6 S 1.76186 * 126.12104 * 180.29324 * 5 3 2 7 7 C 1.70905 * 90.44797 * 180.02562 * 6 5 3 8 8 N 1.37785 * 124.71950 * 179.97438 * 7 6 5 9 9 C 1.46901 * 111.00016 * 179.72345 * 8 7 6 10 10 C 1.53237 * 109.34142 * 172.75090 * 9 8 7 11 11 N 1.47075 * 108.51957 * 53.82697 * 10 9 8 12 12 C 1.36939 * 120.87968 * 128.84412 * 11 10 9 13 13 H 1.08004 * 119.99698 * 206.57405 * 12 11 10 14 14 C 1.38808 * 120.00110 * 26.57280 * 12 11 10 15 15 N 1.31622 * 119.99956 * 17.00708 * 14 12 11 16 16 Si 1.86796 * 119.99962 * 197.01000 * 14 12 11 17 17 H 1.48501 * 109.47251 * 89.99972 * 16 14 12 18 18 H 1.48507 * 109.47241 * 209.99950 * 16 14 12 19 19 H 1.48500 * 109.47125 * 329.99773 * 16 14 12 20 20 C 1.47076 * 118.24012 * 308.81665 * 11 10 9 21 21 C 1.46900 * 110.99449 * 55.42411 * 8 7 6 22 22 N 1.30261 * 110.56527 * 359.69147 * 7 6 5 23 23 C 1.30900 * 117.27384 * 0.24172 * 22 7 6 24 24 Cl 1.73603 * 123.02156 * 179.97438 * 23 22 7 25 25 H 1.09000 * 109.47205 * 300.00145 * 1 2 3 26 26 H 1.09009 * 109.47051 * 60.00066 * 1 2 3 27 27 H 1.08996 * 109.47707 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.49414 * 52.78527 * 9 8 7 29 29 H 1.09009 * 109.51217 * 292.72393 * 9 8 7 30 30 H 1.08993 * 109.63179 * 173.54305 * 10 9 8 31 31 H 1.09008 * 109.62469 * 294.12220 * 10 9 8 32 32 H 0.96998 * 119.99784 * 180.02562 * 15 14 12 33 33 H 1.09000 * 109.63217 * 291.47662 * 20 11 10 34 34 H 1.09003 * 109.63063 * 170.89483 * 20 11 10 35 35 H 1.08991 * 109.49304 * 307.20704 * 21 8 7 36 36 H 1.08998 * 109.49611 * 67.29292 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0418 1.2025 0.0000 4 8 1.3790 2.2232 -0.0005 5 6 3.4552 1.2765 -0.0005 6 16 4.4179 2.7521 0.0067 7 6 5.8565 1.8294 0.0000 8 7 7.1285 2.3590 0.0011 9 6 8.1416 1.2953 0.0009 10 6 9.5304 1.9171 -0.1803 11 7 9.7162 2.9528 0.8474 12 6 10.8324 2.9636 1.6405 13 1 10.7917 3.4083 2.6239 14 6 12.0161 2.4030 1.1807 15 7 12.1770 2.1673 -0.1042 16 14 13.3805 1.9832 2.3854 17 1 13.2007 0.5916 2.8717 18 1 14.6954 2.1040 1.7059 19 1 13.3303 2.9202 3.5364 20 6 8.6717 3.9769 1.0001 21 6 7.3167 3.2739 1.1349 22 7 5.5832 0.5558 -0.0002 23 6 4.3198 0.2134 -0.0005 24 17 3.7874 -1.4390 -0.0015 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 7.9430 0.6038 -0.8180 29 1 8.1048 0.7572 0.9483 30 1 10.2938 1.1475 -0.0668 31 1 9.6039 2.3666 -1.1706 32 1 13.0040 1.7752 -0.4254 33 1 8.6626 4.6243 0.1233 34 1 8.8674 4.5691 1.8940 35 1 6.5199 4.0176 1.1382 36 1 7.2912 2.7088 2.0666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092640546.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:28 Heat of formation + Delta-G solvation = 5.235015 kcal Electronic energy + Delta-G solvation = -23558.275137 eV Core-core repulsion = 19811.158295 eV Total energy + Delta-G solvation = -3747.116843 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.82755 -40.18612 -38.24739 -36.76908 -36.61895 -34.69714 -31.79935 -30.71116 -30.39294 -27.82988 -27.11158 -24.95365 -23.56517 -23.09950 -22.28289 -20.50443 -19.41490 -18.73732 -18.06024 -16.86742 -16.72662 -16.68838 -15.76628 -15.43381 -15.21794 -14.83249 -14.39525 -14.12561 -13.86168 -13.61009 -13.40349 -13.34622 -12.91971 -12.43107 -12.20126 -11.93996 -11.74719 -11.31303 -11.18343 -11.00242 -10.92217 -10.88888 -10.75622 -10.64416 -10.42202 -10.11045 -9.98182 -9.93730 -9.77553 -9.53315 -8.63841 -8.17185 -6.90852 -5.93581 -3.36954 -0.14768 0.63462 1.03109 1.85237 2.00333 2.72417 2.85158 3.30959 3.38353 3.39276 3.63007 4.37053 4.42963 4.63826 4.91945 4.98954 4.99326 5.13298 5.22988 5.35016 5.39927 5.53624 5.65919 5.76778 6.04809 6.14257 6.18459 6.30319 6.52476 6.69499 6.84673 7.12398 7.33550 7.44908 7.55500 7.65863 8.25207 9.02989 9.65240 10.21043 11.15726 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.026712 B = 0.002959 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.954930 B = 9459.794985 C =10119.888542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.337 6.337 3 C 0.555 3.445 4 O -0.515 6.515 5 C -0.356 4.356 6 S 0.276 5.724 7 C 0.268 3.732 8 N -0.432 5.432 9 C 0.043 3.957 10 C 0.173 3.827 11 N -0.594 5.594 12 C -0.260 4.260 13 H 0.070 0.930 14 C 0.006 3.994 15 N -0.901 5.901 16 Si 0.906 3.094 17 H -0.286 1.286 18 H -0.290 1.290 19 H -0.278 1.278 20 C 0.148 3.852 21 C 0.040 3.960 22 N -0.530 5.530 23 C 0.247 3.753 24 Cl 0.023 6.977 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.032 0.968 32 H 0.257 0.743 33 H 0.034 0.966 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.450 -3.293 0.041 19.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.253 6.253 3 C 0.401 3.599 4 O -0.406 6.406 5 C -0.481 4.481 6 S 0.532 5.468 7 C -0.097 4.097 8 N -0.150 5.150 9 C -0.086 4.086 10 C 0.047 3.953 11 N -0.317 5.317 12 C -0.389 4.389 13 H 0.088 0.912 14 C -0.194 4.194 15 N -0.545 5.545 16 Si 0.735 3.265 17 H -0.213 1.213 18 H -0.216 1.216 19 H -0.204 1.204 20 C 0.020 3.980 21 C -0.088 4.088 22 N -0.253 5.253 23 C 0.075 3.925 24 Cl 0.052 6.948 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.120 0.880 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.119 0.881 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.116 -2.091 -0.441 19.235 hybrid contribution 0.176 -1.779 0.887 1.996 sum -18.940 -3.870 0.446 19.337 Atomic orbital electron populations 1.22912 0.76898 1.03638 1.02430 1.86328 1.23048 1.31542 1.84401 1.17858 0.86617 0.82100 0.73278 1.90912 1.66767 1.35405 1.47539 1.23243 0.96311 0.97091 1.31480 1.84029 0.92355 1.03641 1.66820 1.25652 0.98543 0.90514 0.94990 1.58738 0.97497 1.19212 1.39516 1.23183 0.92299 0.91016 1.02115 1.21041 0.90087 0.92652 0.91517 1.44174 1.19927 1.26621 1.41025 1.19184 0.87395 1.36910 0.95404 0.91244 1.25055 0.97055 1.01700 0.95554 1.70005 1.26277 1.46556 1.11647 0.86243 0.81254 0.78589 0.80385 1.21294 1.21639 1.20362 1.21022 0.85608 0.91232 1.00108 1.23230 1.02169 0.94395 0.88998 1.66152 1.18596 1.16037 1.24516 1.21035 0.87646 0.88924 0.94928 1.98429 1.87724 1.12854 1.95782 0.92115 0.92121 0.87992 0.90018 0.92630 0.88133 0.94957 0.93329 0.94791 0.91013 0.90607 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.45 101.05 1.06 1.34 16 2 O -0.34 -3.92 8.24 -41.23 -0.34 -4.26 16 3 C 0.56 7.65 7.72 31.99 0.25 7.90 16 4 O -0.52 -7.92 16.64 -19.42 -0.32 -8.24 16 5 C -0.36 -5.02 6.32 -38.76 -0.24 -5.26 16 6 S 0.28 3.62 21.90 -107.50 -2.35 1.27 16 7 C 0.27 4.13 6.70 -88.01 -0.59 3.54 16 8 N -0.43 -7.19 4.67 -175.22 -0.82 -8.01 16 9 C 0.04 0.80 4.98 -3.70 -0.02 0.78 16 10 C 0.17 3.87 5.42 -3.61 -0.02 3.85 16 11 N -0.59 -13.76 3.04 -172.02 -0.52 -14.28 16 12 C -0.26 -6.66 9.63 -15.06 -0.15 -6.80 16 13 H 0.07 1.74 7.88 -52.48 -0.41 1.32 16 14 C 0.01 0.15 4.94 -17.43 -0.09 0.06 16 15 N -0.90 -24.85 11.15 55.49 0.62 -24.23 16 16 Si 0.91 20.74 29.59 -169.99 -5.03 15.71 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 C 0.15 2.73 6.69 -3.60 -0.02 2.71 16 21 C 0.04 0.62 5.48 -3.70 -0.02 0.60 16 22 N -0.53 -8.50 9.32 -11.82 -0.11 -8.61 16 23 C 0.25 3.60 7.41 -18.38 -0.14 3.47 16 24 Cl 0.02 0.30 27.10 -51.86 -1.41 -1.11 16 25 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 26 H 0.06 0.48 8.13 -51.92 -0.42 0.05 16 27 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 1.47 7.80 -51.93 -0.41 1.07 16 29 H 0.06 1.08 8.14 -51.92 -0.42 0.65 16 30 H 0.10 2.51 6.12 -51.93 -0.32 2.19 16 31 H 0.03 0.77 8.14 -51.92 -0.42 0.35 16 32 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.25 7.95 -51.93 -0.41 0.84 16 35 H 0.08 0.95 7.24 -51.93 -0.38 0.57 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 330.97 15.07 4.99 4.99 Total: -1.00 -29.16 330.97 -9.30 -38.46 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: -4.02 Total: -3.87 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: 0.02 Total: 12.18 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.83 Total: -55.13 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.66 Total: -12.50 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -2.35 Total: 1.27 kcal Atomic # 17 Polarization: 0.30 SS G_CDS: -1.41 Total: -1.11 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.16 -9.30 -38.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092640546.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.694 kcal (2) G-P(sol) polarization free energy of solvation -29.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds