Wall clock time and date at job start Tue Mar 31 2020 16:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00196 * 2 1 4 4 H 1.48495 * 109.47458 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46863 * 299.99875 * 3 2 1 6 6 H 1.48496 * 109.47442 * 59.99655 * 3 2 1 7 7 C 1.38821 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00325 * 197.61447 * 7 2 1 9 9 N 1.36941 * 119.99780 * 17.60492 * 7 2 1 10 10 C 1.46965 * 120.59585 * 208.21154 * 9 7 2 11 11 C 1.53368 * 108.63453 * 235.21024 * 10 9 7 12 12 N 1.46973 * 108.63626 * 310.57568 * 11 10 9 13 13 S 1.65598 * 120.59344 * 235.20569 * 12 11 10 14 14 O 1.42102 * 106.40049 * 336.45820 * 13 12 11 15 15 O 1.42093 * 106.40101 * 203.53624 * 13 12 11 16 16 C 1.76205 * 107.21585 * 89.99673 * 13 12 11 17 17 C 1.38715 * 120.39921 * 90.00317 * 16 13 12 18 18 C 1.38565 * 118.43197 * 179.97438 * 17 16 13 19 19 C 1.38396 * 119.15313 * 359.97438 * 18 17 16 20 20 Cl 1.73598 * 119.63692 * 179.97438 * 19 18 17 21 21 N 1.31944 * 120.72990 * 0.25975 * 19 18 17 22 22 C 1.31915 * 121.70672 * 359.47000 * 21 19 18 23 23 C 1.46962 * 118.81053 * 55.47584 * 12 11 10 24 24 C 1.46968 * 120.58944 * 28.19555 * 9 7 2 25 25 H 0.96996 * 119.99924 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.60666 * 115.46366 * 10 9 7 27 27 H 1.09002 * 109.74556 * 355.03687 * 10 9 7 28 28 H 1.08998 * 109.61148 * 190.83330 * 11 10 9 29 29 H 1.09001 * 109.61170 * 70.32041 * 11 10 9 30 30 H 1.07997 * 120.78395 * 359.97438 * 17 16 13 31 31 H 1.08006 * 120.42360 * 179.97438 * 18 17 16 32 32 H 1.07999 * 119.61096 * 180.27272 * 22 21 19 33 33 H 1.09006 * 109.60752 * 64.26960 * 23 12 11 34 34 H 1.09002 * 109.61198 * 184.77797 * 23 12 11 35 35 H 1.09001 * 109.60757 * 244.53476 * 24 9 7 36 36 H 1.08993 * 109.61248 * 4.87305 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0523 -1.2240 0.2836 9 7 1.3737 -2.3605 -0.3576 10 6 1.8121 -3.6538 0.1856 11 6 2.1169 -4.5985 -0.9836 12 7 0.9827 -4.5705 -1.9179 13 16 0.2130 -5.9712 -2.3511 14 8 1.1466 -7.0224 -2.1449 15 8 -0.4072 -5.7172 -3.6041 16 6 -1.0905 -6.2294 -1.1939 17 6 -2.3536 -5.7075 -1.4315 18 6 -3.3486 -5.9357 -0.4945 19 6 -3.0513 -6.6720 0.6390 20 17 -4.2882 -6.9649 1.8213 21 7 -1.8366 -7.1492 0.8336 22 6 -0.8674 -6.9553 -0.0400 23 6 0.5479 -3.2779 -2.4654 24 6 0.2396 -2.3325 -1.2919 25 1 -0.4850 0.8400 -0.0004 26 1 1.0204 -4.0787 0.8025 27 1 2.7103 -3.5150 0.7875 28 1 2.2565 -5.6121 -0.6080 29 1 3.0206 -4.2676 -1.4953 30 1 -2.5567 -5.1368 -2.3255 31 1 -4.3435 -5.5439 -0.6468 32 1 0.1134 -7.3650 0.1515 33 1 1.3425 -2.8551 -3.0802 34 1 -0.3489 -3.4192 -3.0687 35 1 -0.6642 -2.6634 -0.7802 36 1 0.0980 -1.3183 -1.6651 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104740139.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:07 Heat of formation + Delta-G solvation = -5.358907 kcal Electronic energy + Delta-G solvation = -24611.933817 eV Core-core repulsion = 20864.357587 eV Total energy + Delta-G solvation = -3747.576230 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.43455 -37.72070 -37.28877 -37.00433 -35.84661 -33.92743 -33.03327 -31.55525 -31.20389 -30.27287 -26.51691 -24.28271 -24.19814 -23.33168 -22.98878 -20.22969 -18.92788 -18.27344 -17.77515 -17.17898 -17.06326 -16.23253 -15.56914 -14.91028 -14.85943 -14.78293 -14.16878 -13.89011 -13.75072 -13.65426 -13.55172 -13.35160 -13.00210 -12.30808 -12.21025 -12.12627 -12.08563 -11.69033 -11.54342 -11.40783 -11.21232 -10.90993 -10.81996 -10.51617 -10.44462 -10.30521 -10.07438 -9.97080 -9.82469 -9.54128 -8.89844 -8.56754 -6.78949 -5.91646 -3.35452 0.10731 0.46684 0.81858 1.42128 2.89255 3.23281 3.30198 3.39200 3.40823 3.75728 4.07695 4.11558 4.39438 4.48133 4.60953 4.83272 4.99447 5.23591 5.24635 5.34558 5.41073 5.46453 5.64686 5.81141 5.94744 6.03340 6.15059 6.22752 6.31761 6.49764 6.70633 6.78738 7.13599 7.24303 7.44025 7.68560 8.30168 9.06554 9.69280 10.25626 11.16320 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.012749 B = 0.004407 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.680776 B = 6352.399776 C = 7642.916947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.587 5.587 10 C 0.130 3.870 11 C 0.103 3.897 12 N -0.982 5.982 13 S 2.695 3.305 14 O -0.957 6.957 15 O -0.956 6.956 16 C -0.730 4.730 17 C 0.044 3.956 18 C -0.174 4.174 19 C 0.222 3.778 20 Cl -0.021 7.021 21 N -0.491 5.491 22 C 0.222 3.778 23 C 0.093 3.907 24 C 0.157 3.843 25 H 0.255 0.745 26 H 0.020 0.980 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.163 0.837 31 H 0.156 0.844 32 H 0.181 0.819 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.021 0.979 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.335 -12.149 -2.465 13.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.384 4.384 8 H 0.086 0.914 9 N -0.310 5.310 10 C 0.002 3.998 11 C -0.024 4.024 12 N -0.822 5.822 13 S 2.782 3.218 14 O -0.947 6.947 15 O -0.946 6.946 16 C -0.816 4.816 17 C 0.017 3.983 18 C -0.196 4.196 19 C 0.058 3.942 20 Cl 0.007 6.993 21 N -0.202 5.202 22 C 0.063 3.937 23 C -0.033 4.033 24 C 0.029 3.971 25 H 0.065 0.935 26 H 0.038 0.962 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.180 0.820 31 H 0.174 0.826 32 H 0.198 0.802 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.039 0.961 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.211 -13.037 -2.249 14.218 hybrid contribution -0.487 1.526 0.199 1.614 sum -5.697 -11.511 -2.050 13.006 Atomic orbital electron populations 1.70017 1.05333 1.25648 1.53661 1.25054 0.95280 0.98553 1.00602 0.86212 0.79424 0.83732 0.77316 1.20178 1.21463 1.21738 1.19247 0.92908 0.84660 1.41608 0.91374 1.43899 1.36665 1.01409 1.49021 1.21290 0.98414 0.87500 0.92583 1.22128 0.87919 1.00531 0.91823 1.57416 1.43332 1.21792 1.59659 1.02050 0.73073 0.73020 0.73655 1.93564 1.60377 1.54413 1.86357 1.93564 1.77645 1.85122 1.38233 1.32404 1.17427 1.13430 1.18349 1.21377 0.89789 0.89927 0.97227 1.21952 1.02319 1.01248 0.94034 1.22014 0.89875 0.92799 0.89529 1.98430 1.48890 1.94526 1.57427 1.67153 0.99750 1.21873 1.31422 1.22466 0.97501 0.88212 0.85543 1.22509 0.99641 0.82911 0.98211 1.21272 0.89079 0.98850 0.87882 0.93530 0.96163 0.91360 0.90184 0.90707 0.81994 0.82619 0.80200 0.90938 0.90405 0.96082 0.88113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.63 11.20 55.49 0.62 -24.00 16 2 C 0.00 0.10 4.90 -17.43 -0.09 0.02 16 3 Si 0.90 20.61 29.59 -169.99 -5.03 15.58 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.25 -6.50 9.58 -15.05 -0.14 -6.64 16 8 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 9 N -0.59 -13.42 2.97 -171.77 -0.51 -13.93 16 10 C 0.13 2.44 6.67 -3.60 -0.02 2.41 16 11 C 0.10 1.59 6.55 -3.59 -0.02 1.57 16 12 N -0.98 -15.39 3.26 -113.00 -0.37 -15.76 16 13 S 2.70 39.06 5.71 -107.50 -0.61 38.45 16 14 O -0.96 -14.97 16.00 -57.17 -0.91 -15.89 16 15 O -0.96 -15.29 16.04 -57.17 -0.92 -16.20 16 16 C -0.73 -9.81 5.99 -39.44 -0.24 -10.05 16 17 C 0.04 0.53 9.65 -39.28 -0.38 0.15 16 18 C -0.17 -2.00 9.88 -39.40 -0.39 -2.39 16 19 C 0.22 2.89 7.27 -17.45 -0.13 2.76 16 20 Cl -0.02 -0.24 29.11 -51.86 -1.51 -1.75 16 21 N -0.49 -7.00 10.34 -10.36 -0.11 -7.10 16 22 C 0.22 2.98 10.68 -17.55 -0.19 2.79 16 23 C 0.09 1.59 6.58 -3.37 -0.02 1.57 16 24 C 0.16 3.34 5.54 -3.36 -0.02 3.32 16 25 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 1.23 7.94 -51.93 -0.41 0.82 16 28 H 0.08 1.04 7.09 -51.93 -0.37 0.67 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.16 1.65 7.71 -52.49 -0.40 1.24 16 31 H 0.16 1.32 8.06 -52.48 -0.42 0.89 16 32 H 0.18 2.03 7.63 -52.49 -0.40 1.63 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.08 1.16 7.08 -51.93 -0.37 0.79 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.10 2.42 5.98 -51.93 -0.31 2.11 16 LS Contribution 329.07 15.07 4.96 4.96 Total: -1.00 -31.14 329.07 -9.95 -41.09 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -3.93 Total: -0.94 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -1.64 Total: -4.50 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: -0.36 Total: -60.80 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -1.83 Total: -32.09 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Atomic # 16 Polarization: 39.06 SS G_CDS: -0.61 Total: 38.45 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.51 Total: -1.75 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.14 -9.95 -41.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104740139.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.735 kcal (2) G-P(sol) polarization free energy of solvation -31.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds