Wall clock time and date at job start Tue Mar 31 2020 16:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00196 * 2 1 4 4 H 1.48495 * 109.47458 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46863 * 299.99875 * 3 2 1 6 6 H 1.48496 * 109.47442 * 59.99655 * 3 2 1 7 7 C 1.38821 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00325 * 197.61447 * 7 2 1 9 9 N 1.36941 * 119.99780 * 17.60492 * 7 2 1 10 10 C 1.46965 * 120.59585 * 208.21154 * 9 7 2 11 11 C 1.53368 * 108.63453 * 235.21024 * 10 9 7 12 12 N 1.46973 * 108.63626 * 310.57568 * 11 10 9 13 13 S 1.65598 * 120.59344 * 235.20569 * 12 11 10 14 14 O 1.42102 * 106.40049 * 336.45820 * 13 12 11 15 15 O 1.42093 * 106.40101 * 203.53624 * 13 12 11 16 16 C 1.76205 * 107.21585 * 89.99673 * 13 12 11 17 17 C 1.38715 * 120.39921 * 90.00317 * 16 13 12 18 18 C 1.38565 * 118.43197 * 179.97438 * 17 16 13 19 19 C 1.38396 * 119.15313 * 359.97438 * 18 17 16 20 20 Cl 1.73598 * 119.63692 * 179.97438 * 19 18 17 21 21 N 1.31944 * 120.72990 * 0.25975 * 19 18 17 22 22 C 1.31915 * 121.70672 * 359.47000 * 21 19 18 23 23 C 1.46962 * 118.81053 * 55.47584 * 12 11 10 24 24 C 1.46968 * 120.58944 * 28.19555 * 9 7 2 25 25 H 0.96996 * 119.99924 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.60666 * 115.46366 * 10 9 7 27 27 H 1.09002 * 109.74556 * 355.03687 * 10 9 7 28 28 H 1.08998 * 109.61148 * 190.83330 * 11 10 9 29 29 H 1.09001 * 109.61170 * 70.32041 * 11 10 9 30 30 H 1.07997 * 120.78395 * 359.97438 * 17 16 13 31 31 H 1.08006 * 120.42360 * 179.97438 * 18 17 16 32 32 H 1.07999 * 119.61096 * 180.27272 * 22 21 19 33 33 H 1.09006 * 109.60752 * 64.26960 * 23 12 11 34 34 H 1.09002 * 109.61198 * 184.77797 * 23 12 11 35 35 H 1.09001 * 109.60757 * 244.53476 * 24 9 7 36 36 H 1.08993 * 109.61248 * 4.87305 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0523 -1.2240 0.2836 9 7 1.3737 -2.3605 -0.3576 10 6 1.8121 -3.6538 0.1856 11 6 2.1169 -4.5985 -0.9836 12 7 0.9827 -4.5705 -1.9179 13 16 0.2130 -5.9712 -2.3511 14 8 1.1466 -7.0224 -2.1449 15 8 -0.4072 -5.7172 -3.6041 16 6 -1.0905 -6.2294 -1.1939 17 6 -2.3536 -5.7075 -1.4315 18 6 -3.3486 -5.9357 -0.4945 19 6 -3.0513 -6.6720 0.6390 20 17 -4.2882 -6.9649 1.8213 21 7 -1.8366 -7.1492 0.8336 22 6 -0.8674 -6.9553 -0.0400 23 6 0.5479 -3.2779 -2.4654 24 6 0.2396 -2.3325 -1.2919 25 1 -0.4850 0.8400 -0.0004 26 1 1.0204 -4.0787 0.8025 27 1 2.7103 -3.5150 0.7875 28 1 2.2565 -5.6121 -0.6080 29 1 3.0206 -4.2676 -1.4953 30 1 -2.5567 -5.1368 -2.3255 31 1 -4.3435 -5.5439 -0.6468 32 1 0.1134 -7.3650 0.1515 33 1 1.3425 -2.8551 -3.0802 34 1 -0.3489 -3.4192 -3.0687 35 1 -0.6642 -2.6634 -0.7802 36 1 0.0980 -1.3183 -1.6651 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104740139.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:06 Heat of formation + Delta-G solvation = -26.631063 kcal Electronic energy + Delta-G solvation = -24612.856247 eV Core-core repulsion = 20864.357587 eV Total energy + Delta-G solvation = -3748.498660 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.40758 -39.20701 -38.49998 -37.93219 -37.06172 -35.59620 -34.01273 -32.92792 -32.52870 -31.81049 -28.21477 -25.32638 -25.17605 -24.96988 -24.46303 -21.70621 -20.18923 -19.46937 -19.01380 -18.23184 -18.18117 -17.81682 -16.86408 -16.64291 -15.82424 -15.77637 -15.47291 -15.44952 -15.36229 -15.05986 -14.72888 -14.57271 -14.26224 -13.67620 -13.55706 -13.30797 -13.11700 -13.01830 -12.93437 -12.63918 -12.63112 -12.47065 -12.43500 -12.08420 -11.98866 -11.80012 -11.52819 -11.34235 -10.98650 -10.59096 -10.53007 -10.16523 -8.61609 -7.85653 -5.31326 -0.94375 -0.64516 -0.13212 0.47686 1.48398 1.52425 1.60977 1.75010 2.19652 2.53080 2.62302 3.02241 3.14884 3.29492 3.57888 3.64040 3.65303 3.81245 3.82792 4.31269 4.35251 4.42522 4.45694 4.55568 4.59332 4.69482 4.73860 4.90432 5.10047 5.12281 5.24449 5.32811 5.59957 5.66617 5.77101 6.25784 6.40471 7.16250 7.86016 8.37609 9.19496 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.012749 B = 0.004407 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.680776 B = 6352.399776 C = 7642.916947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.046 4.046 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.290 1.290 6 H -0.298 1.298 7 C -0.258 4.258 8 H 0.069 0.931 9 N -0.606 5.606 10 C 0.127 3.873 11 C 0.108 3.892 12 N -0.985 5.985 13 S 2.718 3.282 14 O -0.966 6.966 15 O -0.968 6.968 16 C -0.737 4.737 17 C 0.036 3.964 18 C -0.170 4.170 19 C 0.207 3.793 20 Cl -0.011 7.011 21 N -0.511 5.511 22 C 0.212 3.788 23 C 0.106 3.894 24 C 0.162 3.838 25 H 0.250 0.750 26 H 0.016 0.984 27 H 0.072 0.928 28 H 0.109 0.891 29 H 0.080 0.920 30 H 0.182 0.818 31 H 0.186 0.814 32 H 0.196 0.804 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.005 0.995 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.171 -13.006 -3.006 14.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.241 4.241 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.217 1.217 6 H -0.225 1.225 7 C -0.389 4.389 8 H 0.087 0.913 9 N -0.330 5.330 10 C 0.000 4.000 11 C -0.018 4.018 12 N -0.824 5.824 13 S 2.806 3.194 14 O -0.956 6.956 15 O -0.959 6.959 16 C -0.825 4.825 17 C 0.010 3.990 18 C -0.191 4.191 19 C 0.044 3.956 20 Cl 0.018 6.982 21 N -0.223 5.223 22 C 0.053 3.947 23 C -0.021 4.021 24 C 0.035 3.965 25 H 0.059 0.941 26 H 0.034 0.966 27 H 0.090 0.910 28 H 0.127 0.873 29 H 0.098 0.902 30 H 0.199 0.801 31 H 0.203 0.797 32 H 0.213 0.787 33 H 0.092 0.908 34 H 0.118 0.882 35 H 0.023 0.977 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.014 -13.920 -2.803 15.059 hybrid contribution -0.595 1.711 0.439 1.864 sum -5.609 -12.209 -2.364 13.642 Atomic orbital electron populations 1.70148 1.06518 1.25780 1.55431 1.25691 0.95923 1.01184 1.01326 0.85295 0.78751 0.80303 0.76568 1.19209 1.21698 1.22497 1.19545 0.93125 0.85866 1.40328 0.91340 1.44160 1.36834 1.02138 1.49837 1.21437 0.98262 0.86380 0.93960 1.22067 0.87980 1.01186 0.90557 1.57426 1.43714 1.21596 1.59681 1.01304 0.72691 0.72171 0.73213 1.93549 1.61098 1.54438 1.86539 1.93545 1.77828 1.85206 1.39293 1.32229 1.17573 1.14389 1.18262 1.21750 0.89515 0.89711 0.98068 1.22299 1.03554 1.00247 0.93042 1.22343 0.89928 0.93029 0.90347 1.98430 1.48234 1.94458 1.57102 1.67166 1.00447 1.22704 1.32002 1.22770 0.98137 0.88280 0.85465 1.22233 1.00755 0.82686 0.96377 1.21093 0.88260 0.98260 0.88889 0.94093 0.96595 0.90957 0.87278 0.90163 0.80086 0.79661 0.78693 0.90794 0.88157 0.97689 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.86 11.20 21.65 0.24 -51.61 16 2 C -0.05 -2.39 4.90 84.86 0.42 -1.98 16 3 Si 0.96 42.70 29.59 68.60 2.03 44.73 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 6 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 7 C -0.26 -13.18 9.58 84.03 0.80 -12.37 16 8 H 0.07 3.41 7.89 -2.91 -0.02 3.39 16 9 N -0.61 -27.60 2.97 -697.35 -2.07 -29.67 16 10 C 0.13 4.61 6.67 86.41 0.58 5.19 16 11 C 0.11 3.13 6.55 86.41 0.57 3.70 16 12 N -0.99 -29.00 3.26 -511.41 -1.67 -30.67 16 13 S 2.72 72.94 5.71 -56.49 -0.32 72.62 16 14 O -0.97 -27.93 16.00 -128.00 -2.05 -29.97 16 15 O -0.97 -28.79 16.04 -128.00 -2.05 -30.84 16 16 C -0.74 -18.48 5.99 22.36 0.13 -18.35 16 17 C 0.04 0.81 9.65 22.46 0.22 1.03 16 18 C -0.17 -3.58 9.88 22.39 0.22 -3.35 16 19 C 0.21 5.10 7.27 84.71 0.62 5.71 16 20 Cl -0.01 -0.24 29.11 -2.72 -0.08 -0.32 16 21 N -0.51 -13.98 10.34 -186.69 -1.93 -15.91 16 22 C 0.21 5.39 10.68 84.66 0.90 6.29 16 23 C 0.11 3.46 6.58 86.57 0.57 4.03 16 24 C 0.16 6.93 5.54 86.56 0.48 7.41 16 25 H 0.25 13.53 8.31 -92.71 -0.77 12.76 16 26 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.07 2.53 7.94 -2.39 -0.02 2.51 16 28 H 0.11 2.54 7.09 -2.39 -0.02 2.52 16 29 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.18 3.25 7.71 -2.91 -0.02 3.23 16 31 H 0.19 2.63 8.06 -2.91 -0.02 2.61 16 32 H 0.20 4.08 7.63 -2.91 -0.02 4.06 16 33 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 34 H 0.10 2.81 7.08 -2.39 -0.02 2.80 16 35 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.07 3.43 5.98 -2.39 -0.01 3.42 16 Total: -1.00 -65.87 329.07 -1.28 -67.15 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 1.11 Total: 7.18 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 5.50 Total: -2.69 kcal Atomic # 7 Polarization: -122.43 SS G_CDS: -5.42 Total: -127.86 kcal Atomic # 8 Polarization: -56.71 SS G_CDS: -4.10 Total: -60.81 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: 72.94 SS G_CDS: -0.32 Total: 72.62 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -0.08 Total: -0.32 kcal Total: -65.87 -1.28 -67.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104740139.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.519 kcal (2) G-P(sol) polarization free energy of solvation -65.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds