Wall clock time and date at job start Tue Mar 31 2020 15:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34225 * 116.99822 * 2 1 4 4 O 1.20826 * 120.00336 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99958 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47366 * 180.02562 * 5 3 2 7 7 C 1.37096 * 120.00092 * 263.10156 * 6 5 3 8 8 H 1.08007 * 119.99794 * 142.05972 * 7 6 5 9 9 C 1.38943 * 120.00244 * 322.05799 * 7 6 5 10 10 N 1.31406 * 120.00462 * 158.26171 * 9 7 6 11 11 Si 1.86807 * 119.99698 * 338.26280 * 9 7 6 12 12 H 1.48503 * 109.46908 * 95.91605 * 11 9 7 13 13 H 1.48501 * 109.46691 * 215.91097 * 11 9 7 14 14 H 1.48500 * 109.47247 * 335.91089 * 11 9 7 15 15 C 1.34779 * 119.99922 * 83.10202 * 6 5 3 16 16 O 1.21297 * 120.00088 * 0.02562 * 15 6 5 17 17 C 1.50697 * 119.99992 * 180.02562 * 15 6 5 18 18 C 1.53006 * 109.47033 * 179.97438 * 17 15 6 19 19 C 1.50697 * 109.47033 * 179.97438 * 18 17 15 20 20 C 1.33404 * 125.19669 * 90.00014 * 19 18 17 21 21 C 1.38475 * 114.91294 * 179.97438 * 20 19 18 22 22 Cl 1.73602 * 122.55253 * 179.97438 * 21 20 19 23 23 C 1.33446 * 114.90187 * 0.02562 * 21 20 19 24 24 S 1.75880 * 125.19551 * 269.69556 * 19 18 17 25 25 H 1.09006 * 109.47242 * 299.99745 * 1 2 3 26 26 H 1.08998 * 109.47427 * 59.99472 * 1 2 3 27 27 H 1.09001 * 109.47399 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47065 * 60.00110 * 5 3 2 29 29 H 1.09006 * 109.47156 * 300.00608 * 5 3 2 30 30 H 0.96996 * 120.00682 * 179.97438 * 10 9 7 31 31 H 1.08993 * 109.47071 * 60.00108 * 17 15 6 32 32 H 1.09002 * 109.46961 * 299.99635 * 17 15 6 33 33 H 1.09000 * 109.47360 * 300.00135 * 18 17 15 34 34 H 1.09002 * 109.47102 * 60.00157 * 18 17 15 35 35 H 1.07997 * 122.54527 * 0.02747 * 20 19 18 36 36 H 1.08002 * 125.20336 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.3123 3.2974 -1.1783 8 1 4.0338 4.3276 -1.3446 9 6 5.0057 2.5982 -2.1585 10 7 4.9582 2.9987 -3.4092 11 14 6.0055 1.0887 -1.6985 12 1 5.1929 -0.1325 -1.9300 13 1 7.2314 1.0335 -2.5346 14 1 6.3867 1.1654 -0.2653 15 6 4.0388 3.3649 1.1594 16 8 3.7468 2.8183 2.2020 17 6 4.4656 4.8102 1.1601 18 6 4.4441 5.3476 2.5925 19 6 4.8715 6.7927 2.5933 20 6 4.0517 7.8370 2.4630 21 6 4.6734 9.0740 2.4939 22 17 3.7962 10.5644 2.3413 23 6 5.9982 9.0334 2.6488 24 16 6.5264 7.3603 2.7737 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 3.9557 0.7809 -0.8909 29 1 3.9564 0.7805 0.8891 30 1 5.4425 2.5108 -4.0934 31 1 3.7799 5.3918 0.5440 32 1 5.4748 4.8912 0.7563 33 1 3.4348 5.2666 2.9959 34 1 5.1296 4.7661 3.2090 35 1 2.9841 7.7262 2.3434 36 1 6.6464 9.8960 2.6948 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120497628.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:41 Heat of formation + Delta-G solvation = -85.130169 kcal Electronic energy + Delta-G solvation = -23439.684951 eV Core-core repulsion = 19656.356829 eV Total energy + Delta-G solvation = -3783.328122 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.06464 -38.86797 -38.18421 -36.27193 -35.93974 -34.97348 -33.21969 -32.11399 -29.53636 -28.30254 -26.64742 -25.30530 -24.34026 -22.33701 -20.83089 -19.33587 -19.10497 -17.50966 -17.43169 -17.16339 -16.48760 -15.92069 -15.82737 -15.40881 -15.22428 -14.77727 -14.17517 -13.68769 -13.61148 -13.26523 -13.10387 -12.94387 -12.85623 -12.51434 -12.23907 -12.05069 -11.89341 -11.75500 -11.54221 -11.16147 -11.11845 -10.98788 -10.88557 -10.64036 -10.45566 -10.37927 -10.16457 -9.94909 -9.39991 -8.89363 -8.63413 -8.38290 -8.05885 -6.62028 -4.24459 0.85319 1.29435 1.73035 2.48954 2.57646 2.82082 2.91440 2.97824 3.13783 3.16417 3.67570 3.96041 4.18824 4.74766 4.84446 5.09528 5.32386 5.34488 5.41072 5.42283 5.44691 5.57581 5.64034 5.76037 5.79857 5.84086 5.97798 6.07256 6.17810 6.23088 6.47388 6.55623 6.81503 7.07841 7.89530 8.10075 8.35251 8.77259 9.12853 9.45404 10.48260 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.013381 B = 0.003341 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.012998 B = 8377.596168 C = 9247.234349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.369 6.369 3 C 0.450 3.550 4 O -0.490 6.490 5 C 0.109 3.891 6 N -0.449 5.449 7 C -0.346 4.346 8 H 0.109 0.891 9 C 0.067 3.933 10 N -0.849 5.849 11 Si 0.861 3.139 12 H -0.270 1.270 13 H -0.280 1.280 14 H -0.255 1.255 15 C 0.496 3.504 16 O -0.593 6.593 17 C -0.111 4.111 18 C -0.037 4.037 19 C -0.143 4.143 20 C -0.145 4.145 21 C -0.036 4.036 22 Cl -0.060 7.060 23 C -0.225 4.225 24 S 0.143 5.857 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.278 0.722 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.150 0.850 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.686 4.756 8.784 10.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.291 3.709 4 O -0.375 6.375 5 C -0.017 4.017 6 N -0.170 5.170 7 C -0.473 4.473 8 H 0.126 0.874 9 C -0.141 4.141 10 N -0.483 5.483 11 Si 0.686 3.314 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.179 1.179 15 C 0.287 3.713 16 O -0.477 6.477 17 C -0.151 4.151 18 C -0.077 4.077 19 C -0.261 4.261 20 C -0.174 4.174 21 C -0.076 4.076 22 Cl -0.031 7.031 23 C -0.362 4.362 24 S 0.406 5.594 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.113 0.887 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.167 0.833 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.695 4.230 9.251 10.312 hybrid contribution -1.171 0.216 -0.536 1.305 sum 0.524 4.446 8.715 9.798 Atomic orbital electron populations 1.23138 0.77527 1.02844 1.02254 1.86522 1.22691 1.34513 1.84914 1.24743 0.92837 0.81200 0.72156 1.90607 1.66609 1.36286 1.44037 1.21385 0.86864 0.88569 1.04835 1.43409 1.57900 1.08242 1.07411 1.19105 1.36662 1.00044 0.91457 0.87395 1.25372 0.96083 0.98035 0.94615 1.69762 1.38206 1.40526 0.99793 0.87163 0.81048 0.82692 0.80465 1.19618 1.20582 1.17896 1.20376 0.79335 0.89029 0.82596 1.90559 1.54059 1.71208 1.31894 1.21352 1.04352 0.93569 0.95815 1.20025 1.03180 0.86597 0.97874 1.24610 0.95530 1.00072 1.05902 1.19863 1.02011 0.89464 1.06058 1.19760 0.91653 0.88281 1.07884 1.98354 1.76126 1.32162 1.96501 1.25488 0.97407 1.01622 1.11636 1.84422 1.07919 0.96308 1.70764 0.92318 0.92209 0.88719 0.87382 0.87358 0.91188 0.88976 0.88681 0.89167 0.89939 0.83250 0.81187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.59 16 2 O -0.37 -6.79 10.57 -39.24 -0.41 -7.20 16 3 C 0.45 9.78 7.98 36.00 0.29 10.06 16 4 O -0.49 -11.89 16.01 -18.75 -0.30 -12.19 16 5 C 0.11 2.36 4.49 -5.20 -0.02 2.34 16 6 N -0.45 -10.50 1.74 -116.09 -0.20 -10.70 16 7 C -0.35 -8.66 9.05 -14.94 -0.14 -8.80 16 8 H 0.11 2.86 7.24 -52.48 -0.38 2.48 16 9 C 0.07 1.69 5.27 -17.47 -0.09 1.60 16 10 N -0.85 -22.48 13.96 55.50 0.77 -21.71 16 11 Si 0.86 18.62 25.01 -169.99 -4.25 14.37 16 12 H -0.27 -5.56 6.71 56.52 0.38 -5.18 16 13 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 14 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 15 C 0.50 11.01 7.37 -10.99 -0.08 10.93 16 16 O -0.59 -13.94 15.68 5.54 0.09 -13.85 16 17 C -0.11 -2.03 4.38 -27.88 -0.12 -2.15 16 18 C -0.04 -0.58 5.00 -27.88 -0.14 -0.71 16 19 C -0.14 -1.98 5.76 -36.00 -0.21 -2.19 16 20 C -0.14 -1.94 9.94 -41.18 -0.41 -2.35 16 21 C -0.04 -0.45 6.27 -41.17 -0.26 -0.71 16 22 Cl -0.06 -0.70 29.11 -51.86 -1.51 -2.21 16 23 C -0.23 -2.57 11.08 29.06 0.32 -2.25 16 24 S 0.14 1.71 23.33 -107.50 -2.51 -0.80 16 25 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 26 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 27 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.11 2.32 3.67 -51.93 -0.19 2.13 16 29 H 0.11 2.17 7.64 -51.93 -0.40 1.77 16 30 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 31 H 0.09 1.71 7.67 -51.93 -0.40 1.31 16 32 H 0.09 1.70 8.10 -51.93 -0.42 1.28 16 33 H 0.09 1.43 8.10 -51.93 -0.42 1.01 16 34 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 35 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 342.80 15.07 5.17 5.17 Total: -1.00 -29.48 342.80 -6.85 -36.33 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -3.90 Total: 5.45 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 0.21 Total: 7.36 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.57 Total: -32.41 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.63 Total: -33.25 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -4.25 Total: 14.37 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.51 Total: -0.80 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.51 Total: -2.21 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.48 -6.85 -36.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120497628.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.805 kcal (2) G-P(sol) polarization free energy of solvation -29.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds