Wall clock time and date at job start Tue Mar 31 2020 15:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34225 * 116.99822 * 2 1 4 4 O 1.20826 * 120.00336 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99958 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47366 * 180.02562 * 5 3 2 7 7 C 1.37096 * 120.00092 * 263.10156 * 6 5 3 8 8 H 1.08007 * 119.99794 * 142.05972 * 7 6 5 9 9 C 1.38943 * 120.00244 * 322.05799 * 7 6 5 10 10 N 1.31406 * 120.00462 * 158.26171 * 9 7 6 11 11 Si 1.86807 * 119.99698 * 338.26280 * 9 7 6 12 12 H 1.48503 * 109.46908 * 95.91605 * 11 9 7 13 13 H 1.48501 * 109.46691 * 215.91097 * 11 9 7 14 14 H 1.48500 * 109.47247 * 335.91089 * 11 9 7 15 15 C 1.34779 * 119.99922 * 83.10202 * 6 5 3 16 16 O 1.21297 * 120.00088 * 0.02562 * 15 6 5 17 17 C 1.50697 * 119.99992 * 180.02562 * 15 6 5 18 18 C 1.53006 * 109.47033 * 179.97438 * 17 15 6 19 19 C 1.50697 * 109.47033 * 179.97438 * 18 17 15 20 20 C 1.33404 * 125.19669 * 90.00014 * 19 18 17 21 21 C 1.38475 * 114.91294 * 179.97438 * 20 19 18 22 22 Cl 1.73602 * 122.55253 * 179.97438 * 21 20 19 23 23 C 1.33446 * 114.90187 * 0.02562 * 21 20 19 24 24 S 1.75880 * 125.19551 * 269.69556 * 19 18 17 25 25 H 1.09006 * 109.47242 * 299.99745 * 1 2 3 26 26 H 1.08998 * 109.47427 * 59.99472 * 1 2 3 27 27 H 1.09001 * 109.47399 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47065 * 60.00110 * 5 3 2 29 29 H 1.09006 * 109.47156 * 300.00608 * 5 3 2 30 30 H 0.96996 * 120.00682 * 179.97438 * 10 9 7 31 31 H 1.08993 * 109.47071 * 60.00108 * 17 15 6 32 32 H 1.09002 * 109.46961 * 299.99635 * 17 15 6 33 33 H 1.09000 * 109.47360 * 300.00135 * 18 17 15 34 34 H 1.09002 * 109.47102 * 60.00157 * 18 17 15 35 35 H 1.07997 * 122.54527 * 0.02747 * 20 19 18 36 36 H 1.08002 * 125.20336 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.3123 3.2974 -1.1783 8 1 4.0338 4.3276 -1.3446 9 6 5.0057 2.5982 -2.1585 10 7 4.9582 2.9987 -3.4092 11 14 6.0055 1.0887 -1.6985 12 1 5.1929 -0.1325 -1.9300 13 1 7.2314 1.0335 -2.5346 14 1 6.3867 1.1654 -0.2653 15 6 4.0388 3.3649 1.1594 16 8 3.7468 2.8183 2.2020 17 6 4.4656 4.8102 1.1601 18 6 4.4441 5.3476 2.5925 19 6 4.8715 6.7927 2.5933 20 6 4.0517 7.8370 2.4630 21 6 4.6734 9.0740 2.4939 22 17 3.7962 10.5644 2.3413 23 6 5.9982 9.0334 2.6488 24 16 6.5264 7.3603 2.7737 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 3.9557 0.7809 -0.8909 29 1 3.9564 0.7805 0.8891 30 1 5.4425 2.5108 -4.0934 31 1 3.7799 5.3918 0.5440 32 1 5.4748 4.8912 0.7563 33 1 3.4348 5.2666 2.9959 34 1 5.1296 4.7661 3.2090 35 1 2.9841 7.7262 2.3434 36 1 6.6464 9.8960 2.6948 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120497628.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:40 Heat of formation + Delta-G solvation = -100.936567 kcal Electronic energy + Delta-G solvation = -23440.370368 eV Core-core repulsion = 19656.356829 eV Total energy + Delta-G solvation = -3784.013539 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.73807 -40.51023 -39.24514 -37.63596 -37.19149 -36.76250 -34.53615 -34.02284 -31.03182 -29.57035 -27.97284 -27.03799 -25.70193 -23.54845 -22.40330 -20.94287 -20.33349 -19.20134 -18.89688 -18.63277 -17.98566 -17.45226 -17.09883 -17.02473 -16.74095 -16.29027 -15.81485 -15.03414 -14.83839 -14.70337 -14.59127 -14.30345 -14.14190 -14.01385 -13.56829 -13.51338 -13.26323 -13.13727 -12.99023 -12.78535 -12.41219 -12.16694 -12.13913 -12.01369 -11.92850 -11.82962 -11.69956 -11.62870 -11.18594 -10.63822 -9.92814 -9.71125 -9.34701 -8.54086 -6.20841 -0.14481 0.34680 0.71858 1.12415 1.20970 1.32993 1.43067 1.46643 1.50809 1.62276 1.96283 2.16228 2.52533 2.94219 3.66399 3.88533 3.93157 4.04612 4.10528 4.17028 4.19247 4.28938 4.29879 4.33997 4.50693 4.63594 4.71631 4.78667 4.97786 5.09709 5.12872 5.21355 5.26502 5.30758 6.02002 6.13223 6.70582 6.87735 7.25935 7.62496 8.59817 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.013381 B = 0.003341 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.012998 B = 8377.596168 C = 9247.234349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.451 3.549 4 O -0.525 6.525 5 C 0.100 3.900 6 N -0.459 5.459 7 C -0.348 4.348 8 H 0.080 0.920 9 C 0.030 3.970 10 N -0.890 5.890 11 Si 0.914 3.086 12 H -0.250 1.250 13 H -0.276 1.276 14 H -0.250 1.250 15 C 0.489 3.511 16 O -0.606 6.606 17 C -0.104 4.104 18 C -0.024 4.024 19 C -0.167 4.167 20 C -0.145 4.145 21 C -0.055 4.055 22 Cl -0.054 7.054 23 C -0.211 4.211 24 S 0.168 5.832 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.141 0.859 28 H 0.112 0.888 29 H 0.126 0.874 30 H 0.283 0.717 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.148 0.852 36 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.452 4.007 9.651 10.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.293 3.707 4 O -0.413 6.413 5 C -0.025 4.025 6 N -0.181 5.181 7 C -0.475 4.475 8 H 0.098 0.902 9 C -0.176 4.176 10 N -0.526 5.526 11 Si 0.737 3.263 12 H -0.175 1.175 13 H -0.202 1.202 14 H -0.173 1.173 15 C 0.281 3.719 16 O -0.492 6.492 17 C -0.144 4.144 18 C -0.064 4.064 19 C -0.285 4.285 20 C -0.175 4.175 21 C -0.095 4.095 22 Cl -0.026 7.026 23 C -0.347 4.347 24 S 0.431 5.569 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.159 0.841 28 H 0.130 0.870 29 H 0.144 0.856 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.166 0.834 36 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 2.450 3.454 10.127 10.977 hybrid contribution -1.504 0.476 -0.789 1.764 sum 0.946 3.930 9.338 10.175 Atomic orbital electron populations 1.23557 0.74891 1.05877 1.02181 1.86490 1.25144 1.32407 1.84075 1.24681 0.92949 0.81615 0.71407 1.90591 1.67324 1.37575 1.45848 1.21513 0.87362 0.87838 1.05787 1.43485 1.58472 1.09007 1.07107 1.18891 1.37090 0.99323 0.92170 0.90239 1.25957 0.96516 1.00947 0.94145 1.69838 1.39392 1.42490 1.00835 0.86307 0.79722 0.79981 0.80340 1.17538 1.20228 1.17343 1.20996 0.78566 0.90228 0.82095 1.90534 1.54579 1.71889 1.32197 1.21327 1.04009 0.91268 0.97796 1.19800 1.02968 0.87865 0.95724 1.24413 0.97098 0.99103 1.07906 1.19982 1.02165 0.89974 1.05360 1.19786 0.92224 0.88259 1.09199 1.98353 1.76106 1.31555 1.96553 1.25854 0.97300 1.02232 1.09329 1.84320 1.06115 0.96369 1.70056 0.92289 0.92503 0.84113 0.87026 0.85600 0.90722 0.89807 0.88327 0.89958 0.89739 0.83395 0.78596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.56 113.37 1.20 1.93 16 2 O -0.36 -12.80 10.57 -51.36 -0.54 -13.34 16 3 C 0.45 19.37 7.98 71.24 0.57 19.94 16 4 O -0.53 -25.71 16.01 21.96 0.35 -25.36 16 5 C 0.10 4.26 4.49 85.63 0.38 4.64 16 6 N -0.46 -21.59 1.74 -639.59 -1.11 -22.71 16 7 C -0.35 -17.76 9.05 84.04 0.76 -17.00 16 8 H 0.08 4.42 7.24 -2.91 -0.02 4.40 16 9 C 0.03 1.50 5.27 84.93 0.45 1.94 16 10 N -0.89 -47.74 13.96 21.66 0.30 -47.44 16 11 Si 0.91 37.46 25.01 68.60 1.72 39.18 16 12 H -0.25 -9.43 6.71 99.48 0.67 -8.76 16 13 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 14 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 15 C 0.49 21.89 7.37 87.66 0.65 22.54 16 16 O -0.61 -28.45 15.68 -3.08 -0.05 -28.50 16 17 C -0.10 -3.88 4.38 29.85 0.13 -3.75 16 18 C -0.02 -0.75 5.00 29.85 0.15 -0.60 16 19 C -0.17 -4.54 5.76 24.59 0.14 -4.40 16 20 C -0.14 -3.83 9.94 21.23 0.21 -3.62 16 21 C -0.06 -1.32 6.27 21.24 0.13 -1.19 16 22 Cl -0.05 -1.20 29.11 -2.72 -0.08 -1.28 16 23 C -0.21 -4.36 11.08 66.73 0.74 -3.62 16 24 S 0.17 3.75 23.33 -56.49 -1.32 2.44 16 25 H 0.06 1.56 8.13 -2.38 -0.02 1.54 16 26 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 27 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.11 4.63 3.67 -2.38 -0.01 4.62 16 29 H 0.13 4.86 7.64 -2.38 -0.02 4.84 16 30 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 31 H 0.08 3.25 7.67 -2.39 -0.02 3.24 16 32 H 0.10 3.58 8.10 -2.39 -0.02 3.56 16 33 H 0.08 2.65 8.10 -2.39 -0.02 2.63 16 34 H 0.08 2.56 8.10 -2.39 -0.02 2.54 16 35 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 36 H 0.20 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -63.32 342.80 5.86 -57.46 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 1.08 Total: 22.73 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: 5.51 Total: 16.81 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: -0.81 Total: -70.14 kcal Atomic # 8 Polarization: -66.96 SS G_CDS: -0.24 Total: -67.20 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 1.72 Total: 39.18 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -1.32 Total: 2.44 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -63.32 5.86 -57.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120497628.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.475 kcal (2) G-P(sol) polarization free energy of solvation -63.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds