Wall clock time and date at job start Tue Mar 31 2020 15:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 116.99858 * 2 1 4 4 O 1.20828 * 120.00084 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99936 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.46945 * 180.02562 * 5 3 2 7 7 C 1.37100 * 119.99861 * 269.99443 * 6 5 3 8 8 H 1.08006 * 119.99917 * 140.65327 * 7 6 5 9 9 C 1.38948 * 120.00193 * 320.65848 * 7 6 5 10 10 N 1.31410 * 120.00452 * 159.00137 * 9 7 6 11 11 Si 1.86801 * 119.99718 * 338.99081 * 9 7 6 12 12 H 1.48504 * 109.46751 * 95.81583 * 11 9 7 13 13 H 1.48496 * 109.47312 * 215.81088 * 11 9 7 14 14 H 1.48500 * 109.47445 * 335.81480 * 11 9 7 15 15 C 1.34774 * 120.00387 * 90.00222 * 6 5 3 16 16 O 1.21292 * 119.99816 * 4.99190 * 15 6 5 17 17 C 1.50704 * 120.00123 * 185.00285 * 15 6 5 18 18 C 1.52998 * 109.46883 * 185.46233 * 17 15 6 19 19 C 1.50695 * 109.47258 * 179.02360 * 18 17 15 20 20 C 1.33357 * 125.19106 * 89.99479 * 19 18 17 21 21 C 1.38468 * 114.93076 * 180.02562 * 20 19 18 22 22 C 1.33506 * 114.88625 * 359.97438 * 21 20 19 23 23 Cl 1.73597 * 125.20974 * 179.97438 * 22 21 20 24 24 S 1.75878 * 125.19108 * 269.99728 * 19 18 17 25 25 H 1.09004 * 109.47167 * 300.00008 * 1 2 3 26 26 H 1.08997 * 109.47507 * 59.99854 * 1 2 3 27 27 H 1.09006 * 109.46893 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47253 * 60.00095 * 5 3 2 29 29 H 1.09004 * 109.46881 * 299.99898 * 5 3 2 30 30 H 0.96994 * 120.00570 * 179.97438 * 10 9 7 31 31 H 1.08995 * 109.47666 * 65.46199 * 17 15 6 32 32 H 1.08997 * 109.46675 * 305.45202 * 17 15 6 33 33 H 1.09001 * 109.47746 * 59.01928 * 18 17 15 34 34 H 1.09003 * 109.47179 * 299.02081 * 18 17 15 35 35 H 1.07998 * 122.52980 * 0.02562 * 20 19 18 36 36 H 1.07996 * 122.55626 * 179.73468 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9816 2.6797 0.0002 7 6 4.1756 3.3378 -1.1868 8 1 3.8610 4.3656 -1.2921 9 6 4.7768 2.6825 -2.2544 10 7 4.6032 3.1255 -3.4794 11 14 5.8319 1.1717 -1.9484 12 1 5.0124 -0.0517 -2.1409 13 1 6.9694 1.1607 -2.9029 14 1 6.3527 1.2049 -0.5581 15 6 4.1732 3.3252 1.1676 16 8 4.0904 2.7204 2.2157 17 6 4.4901 4.7986 1.1709 18 6 4.7928 5.2519 2.6004 19 6 5.1331 6.7200 2.6005 20 6 4.2544 7.7125 2.7459 21 6 4.8001 8.9847 2.7125 22 6 6.1235 9.0240 2.5402 23 17 7.0795 10.4707 2.4576 24 16 6.7497 7.3857 2.4087 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.9557 0.7810 -0.8908 29 1 3.9564 0.7806 0.8892 30 1 5.0232 2.6683 -4.2246 31 1 3.6353 5.3550 0.7866 32 1 5.3586 4.9847 0.5392 33 1 5.6368 4.6833 2.9910 34 1 3.9183 5.0817 3.2285 35 1 3.1972 7.5373 2.8796 36 1 4.2005 9.8771 2.8139 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120581977.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:46 Heat of formation + Delta-G solvation = -83.508078 kcal Electronic energy + Delta-G solvation = -23367.484168 eV Core-core repulsion = 19584.226385 eV Total energy + Delta-G solvation = -3783.257783 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -40.06576 -38.88061 -38.03144 -36.69806 -35.99740 -34.95779 -33.24409 -32.10489 -29.47879 -28.15532 -26.59804 -25.23239 -24.27551 -22.42763 -20.82526 -19.39855 -19.12575 -17.50224 -17.47657 -17.15190 -16.51668 -15.87037 -15.77777 -15.44742 -15.23516 -14.73608 -14.19876 -13.69431 -13.57153 -13.33884 -13.19425 -12.98966 -12.72311 -12.62110 -12.36541 -12.01892 -11.90054 -11.81265 -11.55471 -11.20699 -11.12786 -10.99815 -10.74549 -10.60630 -10.46420 -10.38619 -10.15690 -9.95662 -9.40143 -8.86408 -8.53613 -8.44090 -8.03862 -6.60284 -4.24269 0.82635 1.10965 1.85402 2.21438 2.62615 2.80445 2.92022 2.96426 3.14265 3.17430 3.66152 3.97251 4.18653 4.78460 4.93604 5.25020 5.33082 5.34995 5.40445 5.41849 5.55684 5.57697 5.64331 5.75471 5.79762 5.88562 5.98968 6.15075 6.20983 6.27964 6.50859 6.55960 6.80739 7.09778 7.90229 8.10947 8.34658 8.77197 9.12754 9.44249 10.49997 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.015520 B = 0.003165 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.652760 B = 8844.574635 C = 9820.997051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.369 6.369 3 C 0.449 3.551 4 O -0.489 6.489 5 C 0.107 3.893 6 N -0.450 5.450 7 C -0.345 4.345 8 H 0.108 0.892 9 C 0.068 3.932 10 N -0.850 5.850 11 Si 0.860 3.140 12 H -0.269 1.269 13 H -0.280 1.280 14 H -0.255 1.255 15 C 0.498 3.502 16 O -0.593 6.593 17 C -0.113 4.113 18 C -0.038 4.038 19 C -0.146 4.146 20 C -0.143 4.143 21 C -0.111 4.111 22 C -0.162 4.162 23 Cl -0.025 7.025 24 S 0.150 5.850 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.277 0.723 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.148 0.852 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.728 4.749 8.849 10.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.289 3.711 4 O -0.374 6.374 5 C -0.018 4.018 6 N -0.171 5.171 7 C -0.472 4.472 8 H 0.126 0.874 9 C -0.140 4.140 10 N -0.484 5.484 11 Si 0.686 3.314 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.179 1.179 15 C 0.288 3.712 16 O -0.478 6.478 17 C -0.153 4.153 18 C -0.077 4.077 19 C -0.264 4.264 20 C -0.172 4.172 21 C -0.143 4.143 22 C -0.305 4.305 23 Cl 0.003 6.997 24 S 0.413 5.587 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.113 0.887 28 H 0.122 0.878 29 H 0.131 0.869 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.166 0.834 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.030 4.296 8.916 10.103 hybrid contribution -1.115 0.138 -0.225 1.146 sum 0.914 4.433 8.690 9.799 Atomic orbital electron populations 1.23141 0.77513 1.02860 1.02259 1.86523 1.22695 1.34510 1.84906 1.24750 0.92837 0.81211 0.72257 1.90611 1.66600 1.36251 1.43959 1.21339 0.86818 0.88661 1.04976 1.43378 1.58628 1.08346 1.06714 1.19082 1.40665 0.99830 0.87600 0.87439 1.25362 0.96013 0.97979 0.94688 1.69755 1.39434 1.40868 0.98347 0.87158 0.81461 0.82693 0.80044 1.19632 1.20595 1.17871 1.20404 0.78211 0.89633 0.82910 1.90555 1.56314 1.69057 1.31863 1.21376 1.04454 0.93445 0.96001 1.20029 1.03282 0.86441 0.97986 1.24796 0.95205 1.00515 1.05928 1.19982 1.01295 0.90468 1.05465 1.20154 0.92557 0.99307 1.02327 1.25183 0.95935 0.92700 1.16721 1.98347 1.70706 1.33501 1.97105 1.84486 1.08625 0.94094 1.71527 0.92348 0.92161 0.88708 0.87808 0.86858 0.91219 0.89004 0.88474 0.90080 0.89064 0.83420 0.83703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.58 16 2 O -0.37 -6.75 10.57 -39.24 -0.41 -7.16 16 3 C 0.45 9.69 8.02 36.01 0.29 9.98 16 4 O -0.49 -11.77 16.18 -18.75 -0.30 -12.08 16 5 C 0.11 2.33 4.84 -5.19 -0.03 2.30 16 6 N -0.45 -10.52 1.63 -116.10 -0.19 -10.70 16 7 C -0.34 -8.68 8.93 -14.93 -0.13 -8.81 16 8 H 0.11 2.86 7.45 -52.48 -0.39 2.47 16 9 C 0.07 1.72 5.32 -17.47 -0.09 1.63 16 10 N -0.85 -22.69 13.96 55.50 0.77 -21.91 16 11 Si 0.86 18.84 25.02 -169.99 -4.25 14.59 16 12 H -0.27 -5.63 6.71 56.52 0.38 -5.25 16 13 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.25 -5.53 7.11 56.52 0.40 -5.13 16 15 C 0.50 10.98 7.62 -10.98 -0.08 10.89 16 16 O -0.59 -13.79 15.55 5.55 0.09 -13.70 16 17 C -0.11 -2.05 4.33 -27.88 -0.12 -2.17 16 18 C -0.04 -0.58 5.00 -27.89 -0.14 -0.72 16 19 C -0.15 -2.01 5.76 -36.02 -0.21 -2.21 16 20 C -0.14 -1.79 10.05 -41.20 -0.41 -2.20 16 21 C -0.11 -1.31 10.13 -41.15 -0.42 -1.72 16 22 C -0.16 -2.01 7.10 29.08 0.21 -1.81 16 23 Cl -0.02 -0.28 29.29 -51.86 -1.52 -1.80 16 24 S 0.15 1.95 23.33 -107.50 -2.51 -0.56 16 25 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 26 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 27 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.10 2.24 3.42 -51.93 -0.18 2.06 16 29 H 0.11 2.28 7.36 -51.93 -0.38 1.89 16 30 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.09 1.67 8.04 -51.93 -0.42 1.25 16 32 H 0.10 1.77 7.86 -51.93 -0.41 1.37 16 33 H 0.08 1.25 8.13 -51.93 -0.42 0.83 16 34 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 35 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 343.25 15.07 5.17 5.17 Total: -1.00 -29.46 343.25 -7.11 -36.57 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -3.89 Total: 4.84 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -0.07 Total: 6.74 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: 0.59 Total: -32.62 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -0.63 Total: -32.94 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -4.25 Total: 14.59 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.51 Total: -0.56 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.52 Total: -1.80 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.46 -7.11 -36.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120581977.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.935 kcal (2) G-P(sol) polarization free energy of solvation -29.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds