Wall clock time and date at job start Tue Mar 31 2020 15:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 116.99858 * 2 1 4 4 O 1.20828 * 120.00084 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99936 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.46945 * 180.02562 * 5 3 2 7 7 C 1.37100 * 119.99861 * 269.99443 * 6 5 3 8 8 H 1.08006 * 119.99917 * 140.65327 * 7 6 5 9 9 C 1.38948 * 120.00193 * 320.65848 * 7 6 5 10 10 N 1.31410 * 120.00452 * 159.00137 * 9 7 6 11 11 Si 1.86801 * 119.99718 * 338.99081 * 9 7 6 12 12 H 1.48504 * 109.46751 * 95.81583 * 11 9 7 13 13 H 1.48496 * 109.47312 * 215.81088 * 11 9 7 14 14 H 1.48500 * 109.47445 * 335.81480 * 11 9 7 15 15 C 1.34774 * 120.00387 * 90.00222 * 6 5 3 16 16 O 1.21292 * 119.99816 * 4.99190 * 15 6 5 17 17 C 1.50704 * 120.00123 * 185.00285 * 15 6 5 18 18 C 1.52998 * 109.46883 * 185.46233 * 17 15 6 19 19 C 1.50695 * 109.47258 * 179.02360 * 18 17 15 20 20 C 1.33357 * 125.19106 * 89.99479 * 19 18 17 21 21 C 1.38468 * 114.93076 * 180.02562 * 20 19 18 22 22 C 1.33506 * 114.88625 * 359.97438 * 21 20 19 23 23 Cl 1.73597 * 125.20974 * 179.97438 * 22 21 20 24 24 S 1.75878 * 125.19108 * 269.99728 * 19 18 17 25 25 H 1.09004 * 109.47167 * 300.00008 * 1 2 3 26 26 H 1.08997 * 109.47507 * 59.99854 * 1 2 3 27 27 H 1.09006 * 109.46893 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47253 * 60.00095 * 5 3 2 29 29 H 1.09004 * 109.46881 * 299.99898 * 5 3 2 30 30 H 0.96994 * 120.00570 * 179.97438 * 10 9 7 31 31 H 1.08995 * 109.47666 * 65.46199 * 17 15 6 32 32 H 1.08997 * 109.46675 * 305.45202 * 17 15 6 33 33 H 1.09001 * 109.47746 * 59.01928 * 18 17 15 34 34 H 1.09003 * 109.47179 * 299.02081 * 18 17 15 35 35 H 1.07998 * 122.52980 * 0.02562 * 20 19 18 36 36 H 1.07996 * 122.55626 * 179.73468 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9816 2.6797 0.0002 7 6 4.1756 3.3378 -1.1868 8 1 3.8610 4.3656 -1.2921 9 6 4.7768 2.6825 -2.2544 10 7 4.6032 3.1255 -3.4794 11 14 5.8319 1.1717 -1.9484 12 1 5.0124 -0.0517 -2.1409 13 1 6.9694 1.1607 -2.9029 14 1 6.3527 1.2049 -0.5581 15 6 4.1732 3.3252 1.1676 16 8 4.0904 2.7204 2.2157 17 6 4.4901 4.7986 1.1709 18 6 4.7928 5.2519 2.6004 19 6 5.1331 6.7200 2.6005 20 6 4.2544 7.7125 2.7459 21 6 4.8001 8.9847 2.7125 22 6 6.1235 9.0240 2.5402 23 17 7.0795 10.4707 2.4576 24 16 6.7497 7.3857 2.4087 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.9557 0.7810 -0.8908 29 1 3.9564 0.7806 0.8892 30 1 5.0232 2.6683 -4.2246 31 1 3.6353 5.3550 0.7866 32 1 5.3586 4.9847 0.5392 33 1 5.6368 4.6833 2.9910 34 1 3.9183 5.0817 3.2285 35 1 3.1972 7.5373 2.8796 36 1 4.2005 9.8771 2.8139 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120581977.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:45 Heat of formation + Delta-G solvation = -99.036569 kcal Electronic energy + Delta-G solvation = -23368.157534 eV Core-core repulsion = 19584.226385 eV Total energy + Delta-G solvation = -3783.931149 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.72799 -40.52837 -39.07442 -37.71573 -37.54960 -36.74991 -34.56486 -34.02154 -30.99177 -29.40894 -27.92649 -26.98374 -25.58372 -23.62479 -22.38960 -20.96205 -20.38485 -19.18438 -18.87496 -18.68337 -18.03255 -17.41764 -17.13462 -17.05177 -16.67299 -16.21482 -15.82555 -14.96495 -14.87265 -14.73280 -14.57397 -14.40273 -14.11788 -14.04960 -13.64627 -13.51077 -13.27748 -13.18180 -12.97836 -12.78162 -12.44729 -12.23798 -12.18604 -11.93519 -11.82171 -11.81429 -11.70198 -11.63433 -11.18857 -10.64189 -9.90692 -9.54232 -9.48513 -8.53800 -6.21434 -0.18605 0.12060 0.85288 1.11582 1.19366 1.24481 1.32189 1.42208 1.47663 1.64607 1.95865 2.15413 2.52955 2.93830 3.69473 3.88848 3.93984 4.05960 4.16836 4.20987 4.29724 4.30779 4.33600 4.41202 4.55537 4.64520 4.77427 4.86934 5.01445 5.14116 5.20297 5.24151 5.31019 5.42250 6.02830 6.12732 6.71202 6.87376 7.25489 7.61058 8.60132 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.015520 B = 0.003165 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.652760 B = 8844.574635 C = 9820.997051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.451 3.549 4 O -0.523 6.523 5 C 0.099 3.901 6 N -0.461 5.461 7 C -0.344 4.344 8 H 0.081 0.919 9 C 0.029 3.971 10 N -0.891 5.891 11 Si 0.912 3.088 12 H -0.250 1.250 13 H -0.277 1.277 14 H -0.252 1.252 15 C 0.492 3.508 16 O -0.605 6.605 17 C -0.106 4.106 18 C -0.024 4.024 19 C -0.166 4.166 20 C -0.135 4.135 21 C -0.111 4.111 22 C -0.166 4.166 23 Cl -0.014 7.014 24 S 0.140 5.860 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.141 0.859 28 H 0.107 0.893 29 H 0.130 0.870 30 H 0.282 0.718 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.163 0.837 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.627 4.134 9.720 10.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.293 3.707 4 O -0.411 6.411 5 C -0.026 4.026 6 N -0.183 5.183 7 C -0.472 4.472 8 H 0.098 0.902 9 C -0.176 4.176 10 N -0.527 5.527 11 Si 0.735 3.265 12 H -0.175 1.175 13 H -0.203 1.203 14 H -0.175 1.175 15 C 0.284 3.716 16 O -0.491 6.491 17 C -0.146 4.146 18 C -0.064 4.064 19 C -0.284 4.284 20 C -0.165 4.165 21 C -0.143 4.143 22 C -0.309 4.309 23 Cl 0.015 6.985 24 S 0.403 5.597 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.158 0.842 28 H 0.125 0.875 29 H 0.148 0.852 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.180 0.820 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.924 3.654 9.798 10.632 hybrid contribution -1.186 0.366 -0.462 1.324 sum 0.738 4.019 9.335 10.191 Atomic orbital electron populations 1.23564 0.74847 1.05883 1.02231 1.86491 1.25173 1.32410 1.84071 1.24649 0.92881 0.81640 0.71544 1.90595 1.67278 1.37502 1.45719 1.21447 0.87414 0.87903 1.05828 1.43456 1.59328 1.09073 1.06414 1.18874 1.40739 0.99158 0.88383 0.90165 1.25936 0.96644 1.00834 0.94155 1.69831 1.40779 1.42849 0.99253 0.86325 0.80028 0.80143 0.79966 1.17545 1.20284 1.17524 1.21021 0.77327 0.90923 0.82379 1.90532 1.56743 1.69730 1.32046 1.21351 1.04055 0.91086 0.98099 1.19819 1.03171 0.87659 0.95763 1.24616 0.95923 0.99790 1.08032 1.20245 1.01919 0.90477 1.03842 1.20400 0.92515 0.99841 1.01545 1.25324 0.96363 0.92747 1.16510 1.98352 1.70500 1.32654 1.97040 1.84478 1.08483 0.94920 1.71796 0.92135 0.92542 0.84150 0.87543 0.85244 0.90800 0.89253 0.88832 0.90326 0.89066 0.81987 0.81349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.56 113.37 1.20 1.91 16 2 O -0.37 -12.68 10.57 -51.36 -0.54 -13.22 16 3 C 0.45 19.15 8.02 71.24 0.57 19.72 16 4 O -0.52 -25.24 16.18 21.96 0.36 -24.89 16 5 C 0.10 4.21 4.84 85.63 0.41 4.62 16 6 N -0.46 -21.61 1.63 -639.61 -1.04 -22.65 16 7 C -0.34 -17.64 8.93 84.04 0.75 -16.89 16 8 H 0.08 4.45 7.45 -2.91 -0.02 4.43 16 9 C 0.03 1.50 5.32 84.93 0.45 1.95 16 10 N -0.89 -48.25 13.96 21.66 0.30 -47.95 16 11 Si 0.91 38.13 25.02 68.60 1.72 39.85 16 12 H -0.25 -9.62 6.71 99.48 0.67 -8.95 16 13 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 14 H -0.25 -10.32 7.11 99.48 0.71 -9.62 16 15 C 0.49 21.74 7.62 87.66 0.67 22.41 16 16 O -0.61 -27.86 15.55 -3.07 -0.05 -27.91 16 17 C -0.11 -3.91 4.33 29.85 0.13 -3.78 16 18 C -0.02 -0.74 5.00 29.85 0.15 -0.59 16 19 C -0.17 -4.43 5.76 24.58 0.14 -4.28 16 20 C -0.14 -3.18 10.05 21.22 0.21 -2.97 16 21 C -0.11 -2.40 10.13 21.25 0.22 -2.18 16 22 C -0.17 -3.89 7.10 66.75 0.47 -3.41 16 23 Cl -0.01 -0.29 29.29 -2.72 -0.08 -0.37 16 24 S 0.14 3.56 23.33 -56.49 -1.32 2.24 16 25 H 0.06 1.55 8.13 -2.38 -0.02 1.53 16 26 H 0.06 1.51 8.13 -2.39 -0.02 1.49 16 27 H 0.14 2.34 8.14 -2.38 -0.02 2.32 16 28 H 0.11 4.43 3.42 -2.39 -0.01 4.42 16 29 H 0.13 5.02 7.36 -2.39 -0.02 5.00 16 30 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 31 H 0.09 3.32 8.04 -2.39 -0.02 3.31 16 32 H 0.09 3.50 7.86 -2.39 -0.02 3.48 16 33 H 0.08 2.40 8.13 -2.39 -0.02 2.38 16 34 H 0.09 2.75 8.07 -2.39 -0.02 2.73 16 35 H 0.16 3.29 8.06 -2.91 -0.02 3.26 16 36 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -62.96 343.25 5.80 -57.16 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 1.08 Total: 21.23 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: 5.37 Total: 16.51 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: -0.74 Total: -70.60 kcal Atomic # 8 Polarization: -65.78 SS G_CDS: -0.24 Total: -66.02 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 1.72 Total: 39.85 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -1.32 Total: 2.24 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -0.08 Total: -0.37 kcal Total: -62.96 5.80 -57.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120581977.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.876 kcal (2) G-P(sol) polarization free energy of solvation -62.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds