Wall clock time and date at job start Tue Mar 31 2020 16:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47044 * 0.84543 * 3 2 1 5 5 C 1.36943 * 119.99744 * 266.92147 * 4 3 2 6 6 H 1.08004 * 119.99348 * 138.05457 * 5 4 3 7 7 C 1.38976 * 120.00465 * 317.77764 * 5 4 3 8 8 N 1.31408 * 120.00202 * 167.98033 * 7 5 4 9 9 Si 1.86801 * 119.99833 * 347.97895 * 7 5 4 10 10 H 1.48501 * 109.47262 * 91.46987 * 9 7 5 11 11 H 1.48497 * 109.47321 * 211.47055 * 9 7 5 12 12 H 1.48504 * 109.47403 * 331.47020 * 9 7 5 13 13 C 1.34775 * 119.99699 * 86.92652 * 4 3 2 14 14 O 1.21665 * 119.99713 * 174.71823 * 13 4 3 15 15 C 1.47198 * 120.00347 * 354.71884 * 13 4 3 16 16 C 1.36282 * 122.56878 * 174.71974 * 15 13 4 17 17 S 1.71010 * 109.02000 * 180.02562 * 16 15 13 18 18 C 1.75964 * 90.64478 * 0.02562 * 17 16 15 19 19 C 1.47864 * 125.21531 * 179.97438 * 18 17 16 20 20 C 1.39538 * 120.15110 * 179.70307 * 19 18 17 21 21 C 1.37946 * 119.88152 * 179.74416 * 20 19 18 22 22 C 1.38395 * 120.19193 * 0.53491 * 21 20 19 23 23 C 1.38259 * 120.31681 * 359.73363 * 22 21 20 24 24 C 1.38252 * 120.11430 * 359.97438 * 23 22 21 25 25 F 1.35105 * 120.10140 * 179.97438 * 24 23 22 26 26 N 1.29799 * 109.56290 * 359.73785 * 18 17 16 27 27 H 1.09003 * 109.47214 * 240.84288 * 3 2 1 28 28 H 1.09001 * 109.46587 * 120.84865 * 3 2 1 29 29 H 0.97005 * 120.00024 * 179.97438 * 8 7 5 30 30 H 1.08007 * 125.49234 * 359.97176 * 16 15 13 31 31 H 1.07998 * 120.06328 * 359.97438 * 20 19 18 32 32 H 1.07996 * 119.90023 * 180.27137 * 21 20 19 33 33 H 1.08004 * 119.84161 * 179.76849 * 22 21 20 34 34 H 1.08001 * 119.94197 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3802 -0.0204 5 6 3.3855 -2.0218 1.1546 6 1 3.0942 -3.0526 1.2925 7 6 4.0582 -1.3483 2.1671 8 7 4.1288 -1.8718 3.3703 9 14 4.8622 0.3013 1.8177 10 1 3.9001 1.3933 2.1129 11 1 6.0654 0.4569 2.6739 12 1 5.2601 0.3652 0.3884 13 6 3.2629 -2.0190 -1.1955 14 8 3.7588 -3.1297 -1.2193 15 6 2.8441 -1.3729 -2.4500 16 6 3.0818 -1.9236 -3.6737 17 16 2.4537 -0.8892 -4.8820 18 6 1.8997 0.2422 -3.6533 19 6 1.1922 1.5127 -3.9210 20 6 0.7939 2.3297 -2.8623 21 6 0.1390 3.5164 -3.1186 22 6 -0.1338 3.8933 -4.4220 23 6 0.2523 3.0873 -5.4770 24 6 0.9147 1.8982 -5.2351 25 9 1.2914 1.1105 -6.2661 26 7 2.2028 -0.2121 -2.4758 27 1 2.9712 0.5015 0.8975 28 1 2.9711 0.5278 -0.8823 29 1 4.5987 -1.4019 4.0770 30 1 3.5864 -2.8618 -3.8519 31 1 1.0013 2.0353 -1.8441 32 1 -0.1655 4.1510 -2.2996 33 1 -0.6502 4.8219 -4.6161 34 1 0.0367 3.3876 -6.4917 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126527544.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:27 Heat of formation + Delta-G solvation = 38.204512 kcal Electronic energy + Delta-G solvation = -25192.801004 eV Core-core repulsion = 21326.086371 eV Total energy + Delta-G solvation = -3866.714634 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.053 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.12096 -41.77710 -40.14572 -39.27325 -37.93973 -36.50484 -34.26085 -33.50632 -31.60101 -30.49484 -29.52375 -28.20334 -26.22506 -24.47825 -23.67138 -21.93760 -20.58819 -20.31834 -19.72491 -18.71213 -18.36720 -17.79166 -17.28882 -17.21244 -17.00372 -16.86326 -16.26748 -15.96965 -15.41452 -15.32294 -15.13271 -14.99917 -14.62807 -14.43839 -14.36332 -14.27156 -13.99560 -13.52888 -13.38690 -13.26127 -12.85662 -12.82566 -12.70556 -12.24610 -12.16207 -11.81396 -11.26119 -11.14694 -10.99979 -10.70240 -10.44353 -10.05964 -9.87729 -9.30703 -8.55161 -6.34181 -0.95369 0.06427 0.08501 0.19473 0.47281 1.04046 1.19814 1.33664 1.44146 1.53676 1.83687 2.14545 2.23952 2.46315 2.64042 2.81570 2.83023 3.07163 3.23181 3.54966 3.75752 3.97260 4.01783 4.04781 4.15826 4.27653 4.31156 4.37608 4.64676 4.84763 5.01789 5.06069 5.28944 5.41518 5.42448 5.82277 5.91983 6.17852 6.41950 6.54806 6.70968 7.02062 7.54678 8.60169 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.004694 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.511673 B = 5963.819145 C = 7082.946214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.238 3.762 3 C 0.185 3.815 4 N -0.453 5.453 5 C -0.340 4.340 6 H 0.052 0.948 7 C 0.019 3.981 8 N -0.903 5.903 9 Si 0.931 3.069 10 H -0.225 1.225 11 H -0.276 1.276 12 H -0.244 1.244 13 C 0.537 3.463 14 O -0.584 6.584 15 C 0.002 3.998 16 C -0.234 4.234 17 S 0.279 5.721 18 C 0.063 3.937 19 C -0.076 4.076 20 C -0.065 4.065 21 C -0.125 4.125 22 C -0.062 4.062 23 C -0.142 4.142 24 C 0.101 3.899 25 F -0.132 7.132 26 N -0.453 5.453 27 H 0.105 0.895 28 H 0.155 0.845 29 H 0.286 0.714 30 H 0.195 0.805 31 H 0.123 0.877 32 H 0.158 0.842 33 H 0.177 0.823 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.341 18.341 -20.699 28.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.081 4.081 3 C 0.059 3.941 4 N -0.174 5.174 5 C -0.467 4.467 6 H 0.070 0.930 7 C -0.185 4.185 8 N -0.539 5.539 9 Si 0.752 3.248 10 H -0.150 1.150 11 H -0.202 1.202 12 H -0.168 1.168 13 C 0.325 3.675 14 O -0.466 6.466 15 C -0.134 4.134 16 C -0.377 4.377 17 S 0.539 5.461 18 C -0.211 4.211 19 C -0.081 4.081 20 C -0.086 4.086 21 C -0.143 4.143 22 C -0.081 4.081 23 C -0.161 4.161 24 C 0.079 3.921 25 F -0.110 7.110 26 N -0.170 5.170 27 H 0.123 0.877 28 H 0.172 0.828 29 H 0.096 0.904 30 H 0.213 0.787 31 H 0.141 0.859 32 H 0.176 0.824 33 H 0.194 0.806 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -6.825 17.893 -21.157 28.537 hybrid contribution 1.331 -1.218 1.496 2.344 sum -5.494 16.675 -19.661 26.359 Atomic orbital electron populations 1.80978 1.13372 1.08502 1.11536 1.29571 0.95396 0.92474 0.90622 1.19980 0.81517 0.86460 1.06132 1.43400 1.56730 1.12263 1.04994 1.18697 1.38867 0.98371 0.90808 0.93003 1.26273 0.94861 1.03395 0.93939 1.69767 1.40181 1.41780 1.02134 0.86083 0.79525 0.78576 0.80582 1.14959 1.20150 1.16762 1.17754 0.81022 0.86199 0.82513 1.90662 1.48037 1.21354 1.86592 1.20300 1.04808 0.93561 0.94730 1.27213 1.06364 1.07579 0.96526 1.83669 1.46741 1.08865 1.06844 1.26085 1.03609 1.00196 0.91197 1.17894 1.04081 0.92512 0.93581 1.21270 0.95543 0.93814 0.98006 1.21557 0.98017 0.95629 0.99074 1.21654 0.95756 0.99965 0.90690 1.21435 0.99402 0.92150 1.03096 1.17895 1.00523 0.91888 0.81814 1.91443 1.89279 1.73330 1.56965 1.67085 1.13710 1.11304 1.24866 0.87748 0.82766 0.90421 0.78747 0.85918 0.82441 0.80570 0.81099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -19.70 18.54 20.01 0.37 -19.33 16 2 C 0.24 9.80 13.49 89.44 1.21 11.01 16 3 C 0.18 7.49 4.05 84.58 0.34 7.83 16 4 N -0.45 -22.68 2.11 -649.36 -1.37 -24.06 16 5 C -0.34 -19.84 9.33 84.07 0.78 -19.05 16 6 H 0.05 3.53 8.03 -2.91 -0.02 3.51 16 7 C 0.02 1.06 5.42 84.93 0.46 1.52 16 8 N -0.90 -52.47 13.96 21.67 0.30 -52.17 16 9 Si 0.93 38.60 24.72 68.60 1.70 40.29 16 10 H -0.23 -7.87 6.67 99.48 0.66 -7.21 16 11 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 12 H -0.24 -9.63 7.06 99.48 0.70 -8.93 16 13 C 0.54 26.56 7.56 86.60 0.65 27.22 16 14 O -0.58 -32.91 16.64 -4.24 -0.07 -32.98 16 15 C 0.00 0.07 6.42 40.92 0.26 0.33 16 16 C -0.23 -7.44 10.63 67.36 0.72 -6.73 16 17 S 0.28 6.70 20.72 -56.49 -1.17 5.53 16 18 C 0.06 1.80 7.31 87.54 0.64 2.44 16 19 C -0.08 -1.77 5.88 -20.06 -0.12 -1.89 16 20 C -0.06 -1.40 9.67 22.51 0.22 -1.18 16 21 C -0.12 -1.73 10.03 22.24 0.22 -1.50 16 22 C -0.06 -0.57 10.04 22.31 0.22 -0.34 16 23 C -0.14 -1.63 10.01 22.28 0.22 -1.40 16 24 C 0.10 1.84 7.28 22.63 0.16 2.01 16 25 F -0.13 -2.47 14.66 44.97 0.66 -1.81 16 26 N -0.45 -15.68 5.19 -178.94 -0.93 -16.61 16 27 H 0.11 4.09 3.18 -2.39 -0.01 4.08 16 28 H 0.16 5.45 5.61 -2.39 -0.01 5.43 16 29 H 0.29 15.06 8.31 -92.70 -0.77 14.29 16 30 H 0.20 5.82 8.02 -2.91 -0.02 5.80 16 31 H 0.12 3.09 7.14 -2.91 -0.02 3.07 16 32 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.18 0.28 8.06 -2.91 -0.02 0.26 16 34 H 0.17 0.94 8.06 -2.91 -0.02 0.91 16 Total: -1.00 -75.37 318.95 6.63 -68.74 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 1.14 Total: 12.15 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: 6.00 Total: 20.25 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -1.63 Total: -112.16 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -0.07 Total: -32.98 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.66 Total: -1.81 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 1.70 Total: 40.29 kcal Atomic # 16 Polarization: 6.70 SS G_CDS: -1.17 Total: 5.53 kcal Total: -75.37 6.63 -68.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126527544.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.941 kcal (2) G-P(sol) polarization free energy of solvation -75.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds