Wall clock time and date at job start Tue Mar 31 2020 16:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46978 * 228.04687 * 3 2 1 5 5 C 1.36857 * 120.00324 * 262.08726 * 4 3 2 6 6 H 1.08005 * 120.00285 * 201.46326 * 5 4 3 7 7 C 1.39019 * 119.99867 * 21.45601 * 5 4 3 8 8 N 1.31389 * 119.99821 * 16.19009 * 7 5 4 9 9 Si 1.86799 * 120.00096 * 196.17794 * 7 5 4 10 10 H 1.48510 * 109.46934 * 90.00383 * 9 7 5 11 11 H 1.48500 * 109.47352 * 210.00270 * 9 7 5 12 12 H 1.48493 * 109.47472 * 330.00749 * 9 7 5 13 13 C 1.34776 * 120.00171 * 82.08535 * 4 3 2 14 14 O 1.21760 * 120.00312 * 181.87776 * 13 4 3 15 15 C 1.46415 * 119.99671 * 1.87830 * 13 4 3 16 16 C 1.37034 * 126.12134 * 172.50416 * 15 13 4 17 17 N 1.30609 * 114.00943 * 180.02562 * 16 15 13 18 18 C 1.30388 * 117.30736 * 359.97438 * 17 16 15 19 19 C 1.47693 * 124.73970 * 179.97438 * 18 17 16 20 20 C 1.39643 * 120.16158 * 180.02562 * 19 18 17 21 21 C 1.37893 * 119.87103 * 180.02562 * 20 19 18 22 22 C 1.38425 * 120.21458 * 359.97438 * 21 20 19 23 23 C 1.38264 * 120.32900 * 359.97438 * 22 21 20 24 24 C 1.38248 * 120.12589 * 0.02562 * 23 22 21 25 25 F 1.35092 * 120.10897 * 180.02562 * 24 23 22 26 26 S 1.70922 * 110.51764 * 0.23029 * 18 17 16 27 27 H 1.09000 * 109.47121 * 108.05342 * 3 2 1 28 28 H 1.08996 * 109.47429 * 348.04573 * 3 2 1 29 29 H 0.96994 * 120.00073 * 180.02562 * 8 7 5 30 30 H 1.07994 * 122.99622 * 0.04331 * 16 15 13 31 31 H 1.08002 * 120.06109 * 0.02562 * 20 19 18 32 32 H 1.08000 * 119.89355 * 179.97438 * 21 20 19 33 33 H 1.07999 * 119.83694 * 180.27540 * 22 21 20 34 34 H 1.08006 * 119.93377 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0959 0.9243 1.0272 5 6 3.4772 2.1924 0.6818 6 1 4.1420 2.7504 1.3246 7 6 3.0090 2.7624 -0.4965 8 7 1.9738 2.2389 -1.1134 9 14 3.8513 4.2728 -1.2026 10 1 4.9320 3.8493 -2.1290 11 1 2.8586 5.0930 -1.9421 12 1 4.4332 5.0769 -0.0981 13 6 3.1691 0.5251 2.3124 14 8 3.5421 1.3034 3.1713 15 6 2.8002 -0.8444 2.6758 16 6 2.9616 -1.4250 3.9065 17 7 2.5499 -2.6630 3.9682 18 6 2.0488 -3.1816 2.8819 19 6 1.5361 -4.5619 2.7671 20 6 1.0190 -5.0196 1.5534 21 6 0.5415 -6.3093 1.4531 22 6 0.5736 -7.1514 2.5513 23 6 1.0847 -6.7075 3.7568 24 6 1.5671 -5.4171 3.8729 25 9 2.0669 -4.9838 5.0508 26 16 2.0746 -2.0430 1.6074 27 1 2.9712 0.3193 -0.9771 28 1 2.9718 -1.0045 0.2128 29 1 1.6473 2.6363 -1.9357 30 1 3.3907 -0.9052 4.7503 31 1 0.9932 -4.3648 0.6949 32 1 0.1411 -6.6636 0.5147 33 1 0.2020 -8.1618 2.4647 34 1 1.1070 -7.3700 4.6095 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126534975.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:30 Heat of formation + Delta-G solvation = 26.641946 kcal Electronic energy + Delta-G solvation = -24666.196116 eV Core-core repulsion = 20798.980092 eV Total energy + Delta-G solvation = -3867.216024 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.053 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.81114 -41.14667 -40.50589 -39.54840 -37.76091 -36.37313 -34.10373 -33.41480 -31.63499 -30.65534 -29.52397 -27.61434 -26.29217 -24.01884 -23.66830 -22.65557 -20.41447 -19.98657 -19.72528 -18.52500 -18.35185 -17.79274 -17.31370 -16.91246 -16.68202 -16.59308 -16.11225 -15.88578 -15.68090 -15.39001 -15.24275 -15.09061 -14.65652 -14.36411 -14.07977 -13.94243 -13.61053 -13.35694 -13.28958 -13.02558 -12.78789 -12.74484 -12.52953 -12.48044 -12.19273 -12.12115 -11.30580 -10.98431 -10.89509 -10.62637 -10.40788 -10.10287 -9.86682 -9.27810 -8.55046 -6.13088 -1.16872 0.04677 0.18814 0.21786 0.45490 1.35930 1.47043 1.54930 1.58491 1.72175 2.02474 2.21870 2.27440 2.64446 2.76975 2.86832 2.93577 3.22950 3.24890 3.68970 3.75230 3.80968 4.10397 4.14322 4.20880 4.29637 4.32580 4.61491 4.75230 4.95683 5.03852 5.12974 5.28463 5.35087 5.38301 5.81418 5.85132 6.19358 6.53750 6.76566 6.88532 7.06320 7.63208 8.48815 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.023544 B = 0.003551 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.995415 B = 7882.465135 C = 8810.257354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.246 3.754 3 C 0.213 3.787 4 N -0.433 5.433 5 C -0.337 4.337 6 H 0.094 0.906 7 C 0.009 3.991 8 N -0.885 5.885 9 Si 1.000 3.000 10 H -0.254 1.254 11 H -0.281 1.281 12 H -0.276 1.276 13 C 0.511 3.489 14 O -0.602 6.602 15 C -0.295 4.295 16 C 0.102 3.898 17 N -0.484 5.484 18 C 0.034 3.966 19 C -0.091 4.091 20 C -0.079 4.079 21 C -0.119 4.119 22 C -0.060 4.060 23 C -0.157 4.157 24 C 0.113 3.887 25 F -0.137 7.137 26 S 0.245 5.755 27 H 0.153 0.847 28 H 0.114 0.886 29 H 0.284 0.716 30 H 0.187 0.813 31 H 0.141 0.859 32 H 0.173 0.827 33 H 0.179 0.821 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.056 -20.318 -2.250 20.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.073 4.073 3 C 0.084 3.916 4 N -0.150 5.150 5 C -0.464 4.464 6 H 0.111 0.889 7 C -0.194 4.194 8 N -0.522 5.522 9 Si 0.823 3.177 10 H -0.178 1.178 11 H -0.206 1.206 12 H -0.200 1.200 13 C 0.301 3.699 14 O -0.489 6.489 15 C -0.419 4.419 16 C -0.058 4.058 17 N -0.198 5.198 18 C -0.235 4.235 19 C -0.096 4.096 20 C -0.099 4.099 21 C -0.136 4.136 22 C -0.079 4.079 23 C -0.176 4.176 24 C 0.090 3.910 25 F -0.115 7.115 26 S 0.507 5.493 27 H 0.170 0.830 28 H 0.130 0.870 29 H 0.094 0.906 30 H 0.204 0.796 31 H 0.159 0.841 32 H 0.190 0.810 33 H 0.196 0.804 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.923 -20.207 -2.575 20.579 hybrid contribution 1.219 2.011 1.073 2.585 sum -1.704 -18.196 -1.502 18.337 Atomic orbital electron populations 1.80907 1.13674 1.11100 1.09384 1.29111 0.95368 0.90685 0.92131 1.19215 0.81635 0.93184 0.97521 1.43637 1.54483 1.12642 1.04240 1.19845 1.27741 0.91410 1.07453 0.88858 1.26145 0.94850 1.01839 0.96614 1.69830 1.20593 1.42870 1.18934 0.84811 0.78079 0.76632 0.78186 1.17812 1.20618 1.20039 1.16986 0.84459 0.85716 0.82722 1.90658 1.54078 1.55317 1.48876 1.26256 1.15180 1.00344 1.00168 1.22372 0.97909 0.88857 0.96671 1.66529 1.13791 1.11451 1.28027 1.26082 1.01899 1.00566 0.94910 1.18261 1.06276 0.88882 0.96151 1.21373 0.96048 0.98014 0.94505 1.21558 0.99006 0.91847 1.01238 1.21699 0.94327 1.01597 0.90279 1.21503 1.01306 0.92996 1.01791 1.18200 0.98017 0.93989 0.80774 1.91527 1.84766 1.90365 1.44838 1.83810 1.53746 1.00684 1.11027 0.83009 0.86994 0.90550 0.79599 0.84135 0.80969 0.80365 0.82081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -21.16 18.54 20.00 0.37 -20.79 16 2 C 0.25 10.43 11.07 89.44 0.99 11.42 16 3 C 0.21 8.37 4.73 84.57 0.40 8.77 16 4 N -0.43 -20.68 2.60 -650.23 -1.69 -22.37 16 5 C -0.34 -17.17 9.27 84.10 0.78 -16.39 16 6 H 0.09 5.06 7.43 -2.91 -0.02 5.04 16 7 C 0.01 0.44 4.96 84.95 0.42 0.86 16 8 N -0.89 -41.67 9.41 21.68 0.20 -41.47 16 9 Si 1.00 37.79 29.58 68.60 2.03 39.82 16 10 H -0.25 -8.83 7.11 99.48 0.71 -8.12 16 11 H -0.28 -10.53 7.11 99.48 0.71 -9.82 16 12 H -0.28 -10.80 7.11 99.48 0.71 -10.10 16 13 C 0.51 25.21 7.50 86.37 0.65 25.86 16 14 O -0.60 -33.87 16.57 -4.54 -0.08 -33.94 16 15 C -0.29 -12.26 6.26 24.12 0.15 -12.11 16 16 C 0.10 4.04 11.17 84.59 0.94 4.99 16 17 N -0.48 -18.37 9.02 -191.88 -1.73 -20.10 16 18 C 0.03 1.15 7.13 87.41 0.62 1.78 16 19 C -0.09 -2.47 5.88 -20.06 -0.12 -2.59 16 20 C -0.08 -1.53 9.56 22.53 0.22 -1.31 16 21 C -0.12 -1.42 10.03 22.23 0.22 -1.20 16 22 C -0.06 -0.62 10.04 22.32 0.22 -0.40 16 23 C -0.16 -2.54 10.01 22.28 0.22 -2.31 16 24 C 0.11 2.90 7.29 22.66 0.17 3.06 16 25 F -0.14 -4.30 15.70 44.97 0.71 -3.59 16 26 S 0.25 8.06 15.22 -56.49 -0.86 7.20 16 27 H 0.15 5.80 6.43 -2.39 -0.02 5.79 16 28 H 0.11 3.66 4.53 -20.86 -0.09 3.56 16 29 H 0.28 12.66 8.31 -92.71 -0.77 11.89 16 30 H 0.19 7.11 8.06 -2.91 -0.02 7.09 16 31 H 0.14 2.46 7.22 -2.91 -0.02 2.44 16 32 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 33 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 34 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -69.99 318.99 5.95 -64.04 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 1.10 Total: 10.77 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: 5.89 Total: 20.44 kcal Atomic # 7 Polarization: -101.88 SS G_CDS: -2.85 Total: -104.73 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -0.08 Total: -33.94 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.71 Total: -3.59 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.82 kcal Atomic # 16 Polarization: 8.06 SS G_CDS: -0.86 Total: 7.20 kcal Total: -69.99 5.95 -64.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126534975.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.684 kcal (2) G-P(sol) polarization free energy of solvation -69.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds