Wall clock time and date at job start Tue Mar 31 2020 16:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46492 * 109.47623 * 323.66443 * 3 2 1 5 5 C 1.36939 * 120.00283 * 264.05581 * 4 3 2 6 6 H 1.07999 * 120.00596 * 201.14890 * 5 4 3 7 7 C 1.38981 * 119.99948 * 20.87993 * 5 4 3 8 8 N 1.31416 * 119.99843 * 26.09629 * 7 5 4 9 9 Si 1.86804 * 120.00087 * 206.10369 * 7 5 4 10 10 H 1.48500 * 109.47016 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47127 * 119.99461 * 9 7 5 12 12 H 1.48497 * 109.46806 * 239.99620 * 9 7 5 13 13 C 1.34782 * 119.99780 * 84.05571 * 4 3 2 14 14 O 1.21673 * 119.99856 * 174.52123 * 13 4 3 15 15 C 1.47201 * 120.00184 * 354.52221 * 13 4 3 16 16 C 1.36292 * 122.56193 * 176.39660 * 15 13 4 17 17 S 1.71013 * 109.00824 * 179.86694 * 16 15 13 18 18 C 1.75962 * 90.65154 * 0.32772 * 17 16 15 19 19 C 1.47876 * 125.22101 * 179.84770 * 18 17 16 20 20 C 1.39556 * 120.11254 * 179.68168 * 19 18 17 21 21 C 1.37910 * 119.87798 * 179.76193 * 20 19 18 22 22 C 1.38588 * 120.11738 * 0.51197 * 21 20 19 23 23 F 1.35103 * 119.88515 * 179.71863 * 22 21 20 24 24 C 1.38591 * 120.23091 * 359.73669 * 22 21 20 25 25 C 1.37911 * 120.11621 * 0.02562 * 24 22 21 26 26 N 1.29810 * 109.55834 * 359.80387 * 18 17 16 27 27 H 1.09005 * 109.47035 * 203.66203 * 3 2 1 28 28 H 1.09004 * 109.47143 * 83.66959 * 3 2 1 29 29 H 0.97003 * 119.99748 * 180.02562 * 8 7 5 30 30 H 1.07994 * 125.49397 * 359.97438 * 16 15 13 31 31 H 1.07997 * 120.05882 * 359.97438 * 20 19 18 32 32 H 1.07998 * 119.94044 * 180.25098 * 21 20 19 33 33 H 1.08003 * 119.94078 * 179.97438 * 24 22 21 34 34 H 1.07996 * 120.06104 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.1117 0.8183 5 6 3.4409 -0.8997 2.1267 6 1 4.1026 -1.5893 2.6297 7 6 2.9429 0.2059 2.8058 8 7 1.8039 0.7466 2.4351 9 14 3.8928 0.9237 4.2453 10 1 5.1344 0.1379 4.4602 11 1 4.2449 2.3360 3.9511 12 1 3.0538 0.8673 5.4693 13 6 3.2081 -2.3438 0.2834 14 8 3.7069 -3.2452 0.9307 15 6 2.7262 -2.5988 -1.0839 16 6 2.8771 -3.8041 -1.7020 17 16 2.1931 -3.7171 -3.2670 18 6 1.7455 -2.0365 -2.9997 19 6 1.0517 -1.1726 -3.9791 20 6 0.7413 0.1480 -3.6515 21 6 0.0985 0.9508 -4.5703 22 6 -0.2485 0.4452 -5.8131 23 9 -0.8831 1.2342 -6.7075 24 6 0.0529 -0.8671 -6.1415 25 6 0.6998 -1.6769 -5.2318 26 7 2.1170 -1.6716 -1.8107 27 1 2.9709 0.9421 0.4125 28 1 2.9714 -0.1125 -1.0214 29 1 1.4566 1.5185 2.9088 30 1 3.3506 -4.6743 -1.2721 31 1 1.0070 0.5415 -2.6815 32 1 -0.1386 1.9741 -4.3193 33 1 -0.2201 -1.2564 -7.1112 34 1 0.9346 -2.6993 -5.4888 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126625313.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:34 Heat of formation + Delta-G solvation = 43.722894 kcal Electronic energy + Delta-G solvation = -24859.688412 eV Core-core repulsion = 20993.213074 eV Total energy + Delta-G solvation = -3866.475339 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.053 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.08653 -40.15208 -39.03697 -37.67427 -35.73342 -34.23405 -32.15840 -31.85408 -31.41774 -28.99168 -27.51146 -26.12705 -24.67889 -23.34431 -22.80910 -20.66552 -19.05198 -18.27460 -17.90466 -17.82454 -16.46071 -16.35668 -16.19685 -15.77737 -15.59206 -14.99614 -14.63802 -14.49791 -14.13469 -13.82456 -13.65204 -13.29741 -13.23598 -12.95584 -12.84494 -12.43596 -12.40318 -11.99639 -11.74677 -11.52228 -11.25416 -11.19151 -11.15810 -10.54182 -10.46633 -10.39553 -9.78492 -9.52102 -9.35360 -9.27219 -9.16885 -8.82880 -8.13525 -8.02278 -6.63179 -4.05718 0.18355 1.03599 1.24514 1.32565 1.77444 2.47165 3.08527 3.18012 3.24818 3.48319 3.74596 3.88101 4.02859 4.04811 4.14915 4.29151 4.54904 4.63335 4.76823 4.86026 4.99621 5.07346 5.22062 5.44976 5.54358 5.61519 5.67971 5.73719 5.86613 5.98447 6.12445 6.22623 6.39589 6.49949 6.61882 7.36436 7.63707 7.86688 8.20676 8.88518 8.96102 9.08629 9.66035 10.41295 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.014795 B = 0.004096 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.088479 B = 6834.200994 C = 8460.636358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C 0.265 3.735 3 C 0.222 3.778 4 N -0.411 5.411 5 C -0.317 4.317 6 H 0.113 0.887 7 C 0.038 3.962 8 N -0.850 5.850 9 Si 0.925 3.075 10 H -0.264 1.264 11 H -0.276 1.276 12 H -0.281 1.281 13 C 0.507 3.493 14 O -0.573 6.573 15 C 0.044 3.956 16 C -0.228 4.228 17 S 0.145 5.855 18 C 0.080 3.920 19 C -0.025 4.025 20 C -0.041 4.041 21 C -0.150 4.150 22 C 0.107 3.893 23 F -0.139 7.139 24 C -0.152 4.152 25 C -0.073 4.073 26 N -0.427 5.427 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.276 0.724 30 H 0.187 0.813 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.179 -0.929 -17.085 17.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.159 5.159 2 C -0.053 4.053 3 C 0.095 3.905 4 N -0.128 5.128 5 C -0.445 4.445 6 H 0.130 0.870 7 C -0.170 4.170 8 N -0.486 5.486 9 Si 0.750 3.250 10 H -0.188 1.188 11 H -0.202 1.202 12 H -0.207 1.207 13 C 0.294 3.706 14 O -0.456 6.456 15 C -0.091 4.091 16 C -0.370 4.370 17 S 0.403 5.597 18 C -0.195 4.195 19 C -0.029 4.029 20 C -0.062 4.062 21 C -0.169 4.169 22 C 0.087 3.913 23 F -0.117 7.117 24 C -0.171 4.171 25 C -0.094 4.094 26 N -0.142 5.142 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.086 0.914 30 H 0.205 0.795 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.158 0.842 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.554 -1.405 -17.291 17.417 hybrid contribution 0.781 0.697 1.634 1.941 sum -0.773 -0.708 -15.656 15.691 Atomic orbital electron populations 1.80842 1.13483 1.09278 1.12311 1.28788 0.94905 0.91988 0.89579 1.18942 0.82443 0.92979 0.96155 1.43503 1.53580 1.04999 1.10738 1.19800 1.27414 1.10623 0.86643 0.86960 1.25402 0.94615 0.97699 0.99236 1.69979 1.14586 1.22345 1.41726 0.85896 0.80085 0.78881 0.80113 1.18773 1.20200 1.20672 1.16902 0.86306 0.83203 0.84156 1.90661 1.49561 1.43419 1.62003 1.20965 1.01414 0.89115 0.97611 1.26621 1.08133 1.03817 0.98410 1.83368 1.51818 1.11479 1.13081 1.25815 1.04067 0.94585 0.95026 1.17843 1.00047 0.93023 0.91950 1.21220 0.93857 0.91665 0.99474 1.21152 1.01561 1.01788 0.92386 1.17856 0.96419 0.89212 0.87852 1.91507 1.79460 1.73828 1.66938 1.20943 1.02374 0.92445 1.01328 1.20958 0.96936 0.99770 0.91722 1.67323 1.11416 1.32335 1.03134 0.87418 0.87617 0.91359 0.79544 0.83712 0.84040 0.84169 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.53 18.54 42.15 0.78 -10.75 16 2 C 0.27 6.02 10.92 -20.76 -0.23 5.79 16 3 C 0.22 4.67 4.76 -6.83 -0.03 4.64 16 4 N -0.41 -9.97 2.59 -119.24 -0.31 -10.27 16 5 C -0.32 -8.19 9.24 -15.00 -0.14 -8.33 16 6 H 0.11 3.02 7.44 -52.49 -0.39 2.63 16 7 C 0.04 0.92 4.70 -17.45 -0.08 0.84 16 8 N -0.85 -21.51 9.92 55.50 0.55 -20.96 16 9 Si 0.92 19.08 29.63 -169.99 -5.04 14.04 16 10 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16 11 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 12 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 13 C 0.51 12.16 7.54 -12.62 -0.10 12.06 16 14 O -0.57 -15.21 16.35 5.21 0.09 -15.13 16 15 C 0.04 0.87 6.42 -84.59 -0.54 0.33 16 16 C -0.23 -3.71 10.63 30.03 0.32 -3.39 16 17 S 0.14 1.79 22.10 -107.50 -2.38 -0.59 16 18 C 0.08 1.18 7.31 -14.46 -0.11 1.08 16 19 C -0.02 -0.32 5.87 -104.97 -0.62 -0.93 16 20 C -0.04 -0.54 9.67 -39.21 -0.38 -0.92 16 21 C -0.15 -1.71 10.01 -39.57 -0.40 -2.10 16 22 C 0.11 1.16 7.30 -39.32 -0.29 0.87 16 23 F -0.14 -1.54 17.26 2.25 0.04 -1.50 16 24 C -0.15 -1.42 10.01 -39.57 -0.40 -1.82 16 25 C -0.07 -0.74 9.60 -39.21 -0.38 -1.11 16 26 N -0.43 -7.64 5.04 -7.90 -0.04 -7.68 16 27 H 0.11 2.24 6.82 -51.93 -0.35 1.88 16 28 H 0.11 1.94 5.79 -51.93 -0.30 1.64 16 29 H 0.28 6.66 8.31 -40.82 -0.34 6.32 16 30 H 0.19 2.86 8.02 -52.49 -0.42 2.44 16 31 H 0.15 2.12 7.09 -52.49 -0.37 1.74 16 32 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 34 H 0.13 1.05 7.28 -52.49 -0.38 0.67 16 LS Contribution 323.55 15.07 4.88 4.88 Total: -1.00 -30.81 323.55 -6.98 -37.79 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -2.20 Total: 3.15 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: -3.36 Total: 7.02 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.98 Total: -49.66 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.09 Total: -15.13 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.04 Total: 14.04 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.38 Total: -0.59 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.81 -6.98 -37.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126625313.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.513 kcal (2) G-P(sol) polarization free energy of solvation -30.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds