Wall clock time and date at job start Tue Mar 31 2020 16:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46492 * 109.47623 * 323.66443 * 3 2 1 5 5 C 1.36939 * 120.00283 * 264.05581 * 4 3 2 6 6 H 1.07999 * 120.00596 * 201.14890 * 5 4 3 7 7 C 1.38981 * 119.99948 * 20.87993 * 5 4 3 8 8 N 1.31416 * 119.99843 * 26.09629 * 7 5 4 9 9 Si 1.86804 * 120.00087 * 206.10369 * 7 5 4 10 10 H 1.48500 * 109.47016 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47127 * 119.99461 * 9 7 5 12 12 H 1.48497 * 109.46806 * 239.99620 * 9 7 5 13 13 C 1.34782 * 119.99780 * 84.05571 * 4 3 2 14 14 O 1.21673 * 119.99856 * 174.52123 * 13 4 3 15 15 C 1.47201 * 120.00184 * 354.52221 * 13 4 3 16 16 C 1.36292 * 122.56193 * 176.39660 * 15 13 4 17 17 S 1.71013 * 109.00824 * 179.86694 * 16 15 13 18 18 C 1.75962 * 90.65154 * 0.32772 * 17 16 15 19 19 C 1.47876 * 125.22101 * 179.84770 * 18 17 16 20 20 C 1.39556 * 120.11254 * 179.68168 * 19 18 17 21 21 C 1.37910 * 119.87798 * 179.76193 * 20 19 18 22 22 C 1.38588 * 120.11738 * 0.51197 * 21 20 19 23 23 F 1.35103 * 119.88515 * 179.71863 * 22 21 20 24 24 C 1.38591 * 120.23091 * 359.73669 * 22 21 20 25 25 C 1.37911 * 120.11621 * 0.02562 * 24 22 21 26 26 N 1.29810 * 109.55834 * 359.80387 * 18 17 16 27 27 H 1.09005 * 109.47035 * 203.66203 * 3 2 1 28 28 H 1.09004 * 109.47143 * 83.66959 * 3 2 1 29 29 H 0.97003 * 119.99748 * 180.02562 * 8 7 5 30 30 H 1.07994 * 125.49397 * 359.97438 * 16 15 13 31 31 H 1.07997 * 120.05882 * 359.97438 * 20 19 18 32 32 H 1.07998 * 119.94044 * 180.25098 * 21 20 19 33 33 H 1.08003 * 119.94078 * 179.97438 * 24 22 21 34 34 H 1.07996 * 120.06104 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.1117 0.8183 5 6 3.4409 -0.8997 2.1267 6 1 4.1026 -1.5893 2.6297 7 6 2.9429 0.2059 2.8058 8 7 1.8039 0.7466 2.4351 9 14 3.8928 0.9237 4.2453 10 1 5.1344 0.1379 4.4602 11 1 4.2449 2.3360 3.9511 12 1 3.0538 0.8673 5.4693 13 6 3.2081 -2.3438 0.2834 14 8 3.7069 -3.2452 0.9307 15 6 2.7262 -2.5988 -1.0839 16 6 2.8771 -3.8041 -1.7020 17 16 2.1931 -3.7171 -3.2670 18 6 1.7455 -2.0365 -2.9997 19 6 1.0517 -1.1726 -3.9791 20 6 0.7413 0.1480 -3.6515 21 6 0.0985 0.9508 -4.5703 22 6 -0.2485 0.4452 -5.8131 23 9 -0.8831 1.2342 -6.7075 24 6 0.0529 -0.8671 -6.1415 25 6 0.6998 -1.6769 -5.2318 26 7 2.1170 -1.6716 -1.8107 27 1 2.9709 0.9421 0.4125 28 1 2.9714 -0.1125 -1.0214 29 1 1.4566 1.5185 2.9088 30 1 3.3506 -4.6743 -1.2721 31 1 1.0070 0.5415 -2.6815 32 1 -0.1386 1.9741 -4.3193 33 1 -0.2201 -1.2564 -7.1112 34 1 0.9346 -2.6993 -5.4888 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126625313.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:33 Heat of formation + Delta-G solvation = 26.486272 kcal Electronic energy + Delta-G solvation = -24860.435848 eV Core-core repulsion = 20993.213074 eV Total energy + Delta-G solvation = -3867.222775 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.053 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.93902 -41.56848 -40.13297 -39.13639 -37.58404 -36.09535 -33.85776 -33.09526 -32.25816 -30.17150 -29.28184 -27.73861 -26.06685 -24.36011 -23.97275 -21.89657 -20.45059 -19.75425 -19.62035 -18.73122 -18.11148 -17.65341 -17.15704 -17.02267 -16.65304 -16.62242 -16.05219 -15.86588 -15.52793 -14.93150 -14.88871 -14.73776 -14.60781 -14.47951 -14.00529 -13.86790 -13.43906 -13.38101 -13.31329 -13.16310 -12.89919 -12.85526 -12.38568 -12.18316 -12.07183 -12.03477 -11.20689 -10.92794 -10.85900 -10.56467 -10.26215 -10.17507 -9.97381 -9.14418 -8.50259 -6.02906 -0.88491 0.11833 0.19669 0.21193 0.53561 1.11539 1.46198 1.47380 1.61530 1.99624 2.30380 2.35112 2.47349 2.64572 2.75461 2.98013 3.16893 3.21716 3.70141 3.75255 3.77876 3.89346 4.14804 4.18436 4.27714 4.30750 4.59064 4.71123 4.78811 4.88033 4.97249 5.05687 5.18457 5.31072 5.41799 5.77501 5.95213 6.26106 6.51235 6.99719 7.15448 7.23539 7.81011 8.53660 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.014795 B = 0.004096 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.088479 B = 6834.200994 C = 8460.636358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.280 3.720 3 C 0.230 3.770 4 N -0.427 5.427 5 C -0.353 4.353 6 H 0.089 0.911 7 C 0.011 3.989 8 N -0.876 5.876 9 Si 0.991 3.009 10 H -0.266 1.266 11 H -0.260 1.260 12 H -0.284 1.284 13 C 0.502 3.498 14 O -0.612 6.612 15 C 0.010 3.990 16 C -0.236 4.236 17 S 0.272 5.728 18 C 0.066 3.934 19 C -0.044 4.044 20 C -0.057 4.057 21 C -0.155 4.155 22 C 0.104 3.896 23 F -0.140 7.140 24 C -0.139 4.139 25 C -0.061 4.061 26 N -0.456 5.456 27 H 0.106 0.894 28 H 0.133 0.867 29 H 0.278 0.722 30 H 0.192 0.808 31 H 0.122 0.878 32 H 0.148 0.852 33 H 0.175 0.825 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.155 -1.613 -20.146 20.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.037 4.037 3 C 0.104 3.896 4 N -0.144 5.144 5 C -0.480 4.480 6 H 0.107 0.893 7 C -0.194 4.194 8 N -0.512 5.512 9 Si 0.814 3.186 10 H -0.190 1.190 11 H -0.185 1.185 12 H -0.210 1.210 13 C 0.290 3.710 14 O -0.499 6.499 15 C -0.125 4.125 16 C -0.379 4.379 17 S 0.532 5.468 18 C -0.208 4.208 19 C -0.048 4.048 20 C -0.079 4.079 21 C -0.174 4.174 22 C 0.084 3.916 23 F -0.119 7.119 24 C -0.157 4.157 25 C -0.082 4.082 26 N -0.172 5.172 27 H 0.124 0.876 28 H 0.150 0.850 29 H 0.088 0.912 30 H 0.209 0.791 31 H 0.140 0.860 32 H 0.166 0.834 33 H 0.192 0.808 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.898 -2.080 -20.390 20.584 hybrid contribution 0.816 0.771 2.339 2.595 sum -1.082 -1.308 -18.052 18.131 Atomic orbital electron populations 1.80810 1.14292 1.10327 1.13501 1.29026 0.95131 0.91003 0.88526 1.19062 0.81477 0.91994 0.97085 1.43638 1.54105 1.05973 1.10637 1.19732 1.28643 1.11626 0.87976 0.89325 1.26110 0.94849 0.97099 1.01359 1.70045 1.15455 1.22683 1.43007 0.84932 0.78387 0.78626 0.76682 1.18999 1.18466 1.21014 1.17579 0.84897 0.82605 0.85884 1.90601 1.50998 1.44497 1.63795 1.20397 1.04482 0.91074 0.96591 1.26963 1.07123 1.02784 1.00997 1.82838 1.48096 1.07601 1.08255 1.26234 1.03325 0.96868 0.94401 1.17965 1.01166 0.92784 0.92853 1.21095 0.95219 0.92524 0.99079 1.21213 1.01450 1.02107 0.92663 1.18006 0.96204 0.89929 0.87449 1.91509 1.79464 1.74054 1.66827 1.21295 1.00663 0.91370 1.02400 1.21216 0.95734 1.00997 0.90205 1.67171 1.12646 1.32863 1.04531 0.87583 0.85019 0.91165 0.79082 0.86013 0.83401 0.80758 0.81840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -25.14 18.54 20.00 0.37 -24.77 16 2 C 0.28 13.13 10.92 89.44 0.98 14.10 16 3 C 0.23 10.05 4.76 84.57 0.40 10.46 16 4 N -0.43 -21.63 2.59 -649.37 -1.68 -23.31 16 5 C -0.35 -19.08 9.24 84.07 0.78 -18.30 16 6 H 0.09 5.09 7.44 -2.91 -0.02 5.07 16 7 C 0.01 0.54 4.70 84.93 0.40 0.94 16 8 N -0.88 -45.39 9.92 21.67 0.22 -45.17 16 9 Si 0.99 40.00 29.63 68.60 2.03 42.03 16 10 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 11 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 12 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 13 C 0.50 25.09 7.54 86.60 0.65 25.74 16 14 O -0.61 -34.15 16.35 -4.26 -0.07 -34.21 16 15 C 0.01 0.41 6.42 40.93 0.26 0.67 16 16 C -0.24 -7.37 10.63 67.37 0.72 -6.65 16 17 S 0.27 5.70 22.10 -56.49 -1.25 4.46 16 18 C 0.07 1.83 7.31 87.55 0.64 2.47 16 19 C -0.04 -1.03 5.87 -20.09 -0.12 -1.15 16 20 C -0.06 -1.48 9.67 22.51 0.22 -1.26 16 21 C -0.16 -3.38 10.01 22.28 0.22 -3.16 16 22 C 0.10 1.98 7.30 22.44 0.16 2.15 16 23 F -0.14 -2.76 17.26 44.97 0.78 -1.98 16 24 C -0.14 -2.00 10.01 22.28 0.22 -1.78 16 25 C -0.06 -0.97 9.60 22.51 0.22 -0.75 16 26 N -0.46 -16.27 5.04 -178.92 -0.90 -17.17 16 27 H 0.11 4.59 6.82 -2.38 -0.02 4.57 16 28 H 0.13 5.00 5.79 -2.39 -0.01 4.99 16 29 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 30 H 0.19 5.67 8.02 -2.91 -0.02 5.65 16 31 H 0.12 3.69 7.09 -2.91 -0.02 3.67 16 32 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 33 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 34 H 0.16 1.58 7.28 -2.91 -0.02 1.55 16 Total: -1.00 -70.44 323.55 6.43 -64.01 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 1.19 Total: 12.66 kcal Atomic # 6 Polarization: 17.71 SS G_CDS: 5.75 Total: 23.46 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -2.00 Total: -110.42 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -0.07 Total: -34.21 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.78 Total: -1.98 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Atomic # 16 Polarization: 5.70 SS G_CDS: -1.25 Total: 4.46 kcal Total: -70.44 6.43 -64.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126625313.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.496 kcal (2) G-P(sol) polarization free energy of solvation -70.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds