Wall clock time and date at job start Tue Mar 31 2020 16:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31298 * 1 3 3 Si 1.86797 * 119.99988 * 2 1 4 4 H 1.48507 * 109.46897 * 239.99696 * 3 2 1 5 5 H 1.48496 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47342 * 119.99922 * 3 2 1 7 7 C 1.38987 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99890 * 180.02562 * 7 2 1 9 9 N 1.37318 * 119.99930 * 0.02562 * 7 2 1 10 10 C 1.36508 * 126.06765 * 180.28904 * 9 7 2 11 11 C 1.35690 * 107.50425 * 180.15420 * 10 9 7 12 12 N 1.40551 * 126.08453 * 179.83559 * 11 10 9 13 13 C 1.34770 * 120.00126 * 179.71430 * 12 11 10 14 14 O 1.21813 * 119.99811 * 5.23519 * 13 12 11 15 15 C 1.41659 * 119.99884 * 185.22755 * 13 12 11 16 16 C 1.38726 * 126.80126 * 90.17715 * 15 13 12 17 17 Cl 1.73592 * 125.91460 * 359.97438 * 16 15 13 18 18 N 1.32422 * 108.16598 * 180.02562 * 16 15 13 19 19 C 1.33204 * 109.83412 * 0.02562 * 18 16 15 20 20 C 1.40656 * 131.77866 * 180.02562 * 19 18 16 21 21 C 1.36287 * 119.38976 * 179.97438 * 20 19 18 22 22 C 1.40178 * 119.60778 * 359.97438 * 21 20 19 23 23 C 1.35258 * 120.12395 * 359.97438 * 22 21 20 24 24 N 1.35957 * 120.64171 * 0.02674 * 23 22 21 25 25 C 1.40665 * 107.83386 * 359.57903 * 11 10 9 26 26 N 1.30908 * 108.38560 * 0.26145 * 25 11 10 27 27 H 0.96997 * 119.99916 * 0.02562 * 1 2 3 28 28 H 1.08004 * 126.24716 * 359.97438 * 10 9 7 29 29 H 0.97004 * 119.99450 * 359.71737 * 12 11 10 30 30 H 1.08007 * 120.30622 * 359.97438 * 20 19 18 31 31 H 1.07992 * 120.19407 * 180.25348 * 21 20 19 32 32 H 1.08003 * 119.93466 * 180.02562 * 22 21 20 33 33 H 1.08002 * 119.67738 * 179.97438 * 23 22 21 34 34 H 1.07995 * 125.80763 * 180.30377 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.1008 1.6963 -1.2125 5 1 1.2820 2.7464 -0.0006 6 1 3.1007 1.6964 1.2125 7 6 2.0079 -1.2037 0.0005 8 1 3.0879 -1.2037 0.0010 9 7 1.3212 -2.3929 0.0005 10 6 1.8749 -3.6406 0.0066 11 6 0.8577 -4.5386 0.0007 12 7 0.9887 -5.9379 0.0007 13 6 -0.1105 -6.7177 0.0003 14 8 -1.2150 -6.2132 -0.0963 15 6 0.0187 -8.1240 0.1121 16 6 0.0321 -8.8667 1.2837 17 17 -0.1073 -8.2320 2.8934 18 7 0.1708 -10.1436 0.9614 19 6 0.2491 -10.2697 -0.3623 20 6 0.3982 -11.3979 -1.1890 21 6 0.4496 -11.2342 -2.5411 22 6 0.3528 -9.9467 -3.0870 23 6 0.2087 -8.8743 -2.2754 24 7 0.1565 -9.0289 -0.9257 25 6 -0.3514 -3.8198 0.0007 26 7 -0.0716 -2.5409 0.0006 27 1 -0.4850 0.8400 -0.0004 28 1 2.9301 -3.8710 0.0119 29 1 1.8704 -6.3424 0.0011 30 1 0.4714 -12.3848 -0.7564 31 1 0.5598 -12.0917 -3.1882 32 1 0.3925 -9.8110 -4.1577 33 1 0.1351 -7.8856 -2.7038 34 1 -1.3421 -4.2497 0.0013 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139370886.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:18 Heat of formation + Delta-G solvation = 146.891137 kcal Electronic energy + Delta-G solvation = -24418.948601 eV Core-core repulsion = 20574.823228 eV Total energy + Delta-G solvation = -3844.125373 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.058 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.17311 -39.96861 -38.67065 -37.74706 -36.60533 -34.31643 -34.05834 -33.20397 -30.63782 -30.35563 -29.63683 -27.66696 -25.20044 -24.23548 -23.65770 -22.58871 -21.18428 -20.57601 -19.54565 -18.35791 -17.47562 -17.35509 -16.80220 -16.42097 -15.96782 -15.48427 -15.24006 -15.21200 -14.62327 -14.31573 -14.09973 -13.66306 -13.14948 -13.00812 -12.94915 -12.82873 -12.25617 -11.72568 -11.53756 -11.45510 -11.40513 -11.35113 -11.27702 -11.03177 -10.59082 -10.52296 -10.25781 -9.56701 -9.22108 -9.02395 -8.87302 -8.17145 -8.11950 -6.78942 -6.60006 -4.27900 0.34376 0.69040 1.45540 2.02530 2.22863 2.73112 2.98375 3.02482 3.06711 3.11796 3.54937 3.61597 3.82510 3.91679 4.23561 4.32068 4.44275 4.56188 4.67062 4.78827 4.97958 5.03693 5.13914 5.38762 5.60849 5.71938 5.81957 6.03560 6.18802 6.37225 6.57113 6.79095 6.88734 6.99377 7.16839 7.28440 7.79872 8.02553 8.18686 8.49540 8.70377 9.31654 9.60630 10.35730 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.020485 B = 0.002889 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.526481 B = 9691.283173 C =10488.169345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.047 3.953 3 Si 0.935 3.065 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.323 4.323 8 H 0.117 0.883 9 N -0.139 5.139 10 C -0.080 4.080 11 C -0.065 4.065 12 N -0.602 5.602 13 C 0.575 3.425 14 O -0.513 6.513 15 C -0.091 4.091 16 C 0.160 3.840 17 Cl 0.023 6.977 18 N -0.483 5.483 19 C 0.245 3.755 20 C -0.082 4.082 21 C -0.090 4.090 22 C -0.136 4.136 23 C 0.067 3.933 24 N -0.329 5.329 25 C -0.028 4.028 26 N -0.259 5.259 27 H 0.276 0.724 28 H 0.147 0.853 29 H 0.399 0.601 30 H 0.157 0.843 31 H 0.148 0.852 32 H 0.158 0.842 33 H 0.170 0.830 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.216 -19.330 -5.124 20.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.455 4.455 8 H 0.134 0.866 9 N 0.094 4.906 10 C -0.231 4.231 11 C -0.171 4.171 12 N -0.244 5.244 13 C 0.358 3.642 14 O -0.388 6.388 15 C -0.208 4.208 16 C -0.004 4.004 17 Cl 0.051 6.949 18 N -0.204 5.204 19 C 0.004 3.996 20 C -0.102 4.102 21 C -0.114 4.114 22 C -0.157 4.157 23 C -0.057 4.057 24 N 0.000 5.000 25 C -0.204 4.204 26 N -0.090 5.090 27 H 0.087 0.913 28 H 0.164 0.836 29 H 0.232 0.768 30 H 0.174 0.826 31 H 0.166 0.834 32 H 0.175 0.825 33 H 0.187 0.813 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.735 -18.101 -4.469 18.845 hybrid contribution 1.208 0.281 -0.304 1.277 sum 3.943 -17.821 -4.773 18.865 Atomic orbital electron populations 1.70203 1.06142 1.28219 1.34859 1.25651 0.95718 1.00308 0.95421 0.85886 0.79158 0.79559 0.79510 1.19141 1.20093 1.19104 1.19850 0.91686 0.80519 1.53466 0.86574 1.44571 1.04078 1.03307 1.38678 1.21249 0.96827 0.85288 1.19750 1.17229 0.94509 0.80667 1.24674 1.42523 1.07819 1.04794 1.69250 1.15174 0.85127 0.83134 0.80764 1.90801 1.25582 1.73928 1.48452 1.19687 1.23175 0.91697 0.86256 1.21189 1.02552 0.89223 0.87431 1.98425 1.96032 1.83946 1.16457 1.70125 1.23655 1.17531 1.09113 1.20737 1.04804 0.85516 0.88526 1.20325 1.01456 0.96430 0.92017 1.21142 0.98018 0.97828 0.94432 1.20934 1.02579 0.91290 1.00881 1.21839 1.01489 1.02535 0.79824 1.42529 1.43221 1.08431 1.05868 1.24107 0.97934 0.90755 1.07583 1.78281 0.90059 1.14944 1.25743 0.91315 0.83598 0.76808 0.82552 0.83406 0.82466 0.81320 0.80746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.20 11.81 55.50 0.66 -20.54 16 2 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 3 Si 0.94 18.64 29.55 -169.99 -5.02 13.61 16 4 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.32 -8.40 10.25 -14.82 -0.15 -8.55 16 8 H 0.12 2.68 7.83 -52.49 -0.41 2.27 16 9 N -0.14 -3.76 3.74 -11.41 -0.04 -3.80 16 10 C -0.08 -1.84 11.49 -16.38 -0.19 -2.03 16 11 C -0.07 -1.48 6.90 -83.85 -0.58 -2.06 16 12 N -0.60 -10.93 5.45 -12.58 -0.07 -11.00 16 13 C 0.57 10.69 7.11 -14.96 -0.11 10.58 16 14 O -0.51 -11.39 14.26 5.09 0.07 -11.32 16 15 C -0.09 -1.46 6.52 -83.42 -0.54 -2.01 16 16 C 0.16 2.56 7.77 -17.12 -0.13 2.43 16 17 Cl 0.02 0.35 29.11 -51.86 -1.51 -1.16 16 18 N -0.48 -7.27 11.25 -9.38 -0.11 -7.37 16 19 C 0.25 3.11 7.77 -156.05 -1.21 1.90 16 20 C -0.08 -0.68 10.10 -39.37 -0.40 -1.08 16 21 C -0.09 -0.53 10.07 -39.56 -0.40 -0.93 16 22 C -0.14 -0.90 10.00 -39.91 -0.40 -1.30 16 23 C 0.07 0.67 10.82 -16.78 -0.18 0.48 16 24 N -0.33 -4.34 2.96 -60.11 -0.18 -4.52 16 25 C -0.03 -0.73 10.85 -17.03 -0.18 -0.92 16 26 N -0.26 -7.44 10.40 30.80 0.32 -7.12 16 27 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.15 2.80 8.06 -52.48 -0.42 2.38 16 29 H 0.40 5.90 8.79 -40.82 -0.36 5.54 16 30 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 31 H 0.15 0.37 8.06 -52.49 -0.42 -0.05 16 32 H 0.16 0.54 8.06 -52.48 -0.42 0.12 16 33 H 0.17 1.60 8.06 -52.49 -0.42 1.17 16 34 H 0.18 4.52 5.93 -52.49 -0.31 4.21 16 LS Contribution 326.15 15.07 4.91 4.91 Total: -1.00 -34.59 326.15 -7.87 -42.46 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -2.33 Total: 8.24 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -4.57 Total: -2.40 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.58 Total: -54.35 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.07 Total: -11.32 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.61 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -1.51 Total: -1.16 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.59 -7.87 -42.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139370886.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.349 kcal (2) G-P(sol) polarization free energy of solvation -34.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds