Wall clock time and date at job start Tue Mar 31 2020 16:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31298 * 1 3 3 Si 1.86797 * 119.99988 * 2 1 4 4 H 1.48507 * 109.46897 * 239.99696 * 3 2 1 5 5 H 1.48496 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47342 * 119.99922 * 3 2 1 7 7 C 1.38987 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99890 * 180.02562 * 7 2 1 9 9 N 1.37318 * 119.99930 * 0.02562 * 7 2 1 10 10 C 1.36508 * 126.06765 * 180.28904 * 9 7 2 11 11 C 1.35690 * 107.50425 * 180.15420 * 10 9 7 12 12 N 1.40551 * 126.08453 * 179.83559 * 11 10 9 13 13 C 1.34770 * 120.00126 * 179.71430 * 12 11 10 14 14 O 1.21813 * 119.99811 * 5.23519 * 13 12 11 15 15 C 1.41659 * 119.99884 * 185.22755 * 13 12 11 16 16 C 1.38726 * 126.80126 * 90.17715 * 15 13 12 17 17 Cl 1.73592 * 125.91460 * 359.97438 * 16 15 13 18 18 N 1.32422 * 108.16598 * 180.02562 * 16 15 13 19 19 C 1.33204 * 109.83412 * 0.02562 * 18 16 15 20 20 C 1.40656 * 131.77866 * 180.02562 * 19 18 16 21 21 C 1.36287 * 119.38976 * 179.97438 * 20 19 18 22 22 C 1.40178 * 119.60778 * 359.97438 * 21 20 19 23 23 C 1.35258 * 120.12395 * 359.97438 * 22 21 20 24 24 N 1.35957 * 120.64171 * 0.02674 * 23 22 21 25 25 C 1.40665 * 107.83386 * 359.57903 * 11 10 9 26 26 N 1.30908 * 108.38560 * 0.26145 * 25 11 10 27 27 H 0.96997 * 119.99916 * 0.02562 * 1 2 3 28 28 H 1.08004 * 126.24716 * 359.97438 * 10 9 7 29 29 H 0.97004 * 119.99450 * 359.71737 * 12 11 10 30 30 H 1.08007 * 120.30622 * 359.97438 * 20 19 18 31 31 H 1.07992 * 120.19407 * 180.25348 * 21 20 19 32 32 H 1.08003 * 119.93466 * 180.02562 * 22 21 20 33 33 H 1.08002 * 119.67738 * 179.97438 * 23 22 21 34 34 H 1.07995 * 125.80763 * 180.30377 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.1008 1.6963 -1.2125 5 1 1.2820 2.7464 -0.0006 6 1 3.1007 1.6964 1.2125 7 6 2.0079 -1.2037 0.0005 8 1 3.0879 -1.2037 0.0010 9 7 1.3212 -2.3929 0.0005 10 6 1.8749 -3.6406 0.0066 11 6 0.8577 -4.5386 0.0007 12 7 0.9887 -5.9379 0.0007 13 6 -0.1105 -6.7177 0.0003 14 8 -1.2150 -6.2132 -0.0963 15 6 0.0187 -8.1240 0.1121 16 6 0.0321 -8.8667 1.2837 17 17 -0.1073 -8.2320 2.8934 18 7 0.1708 -10.1436 0.9614 19 6 0.2491 -10.2697 -0.3623 20 6 0.3982 -11.3979 -1.1890 21 6 0.4496 -11.2342 -2.5411 22 6 0.3528 -9.9467 -3.0870 23 6 0.2087 -8.8743 -2.2754 24 7 0.1565 -9.0289 -0.9257 25 6 -0.3514 -3.8198 0.0007 26 7 -0.0716 -2.5409 0.0006 27 1 -0.4850 0.8400 -0.0004 28 1 2.9301 -3.8710 0.0119 29 1 1.8704 -6.3424 0.0011 30 1 0.4714 -12.3848 -0.7564 31 1 0.5598 -12.0917 -3.1882 32 1 0.3925 -9.8110 -4.1577 33 1 0.1351 -7.8856 -2.7038 34 1 -1.3421 -4.2497 0.0013 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139370886.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:17 Heat of formation + Delta-G solvation = 123.648042 kcal Electronic energy + Delta-G solvation = -24419.956497 eV Core-core repulsion = 20574.823228 eV Total energy + Delta-G solvation = -3845.133269 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.058 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.12963 -41.76425 -40.28852 -38.68334 -37.69260 -36.04251 -35.12553 -34.81703 -32.32814 -31.46557 -30.81691 -29.33699 -26.94367 -25.29822 -24.65350 -23.58943 -22.93939 -21.99805 -21.33332 -19.76200 -19.05868 -18.20306 -17.88377 -17.58199 -17.40794 -16.87579 -16.73083 -16.21022 -15.88469 -15.58273 -15.49067 -15.25740 -14.91711 -14.80675 -14.03314 -13.50347 -13.45999 -13.37756 -12.95041 -12.88506 -12.86635 -12.55950 -12.37146 -12.16349 -12.12450 -11.95964 -11.64140 -11.12622 -11.05077 -10.84750 -10.13378 -9.95982 -9.10162 -8.62678 -8.48379 -6.26689 -0.40017 -0.15552 0.35820 0.76898 1.22517 1.31400 1.40100 1.54615 1.56937 1.81194 2.05187 2.26779 2.39392 2.43785 2.85592 3.04362 3.07853 3.48435 3.61504 3.81162 3.91475 4.10936 4.39554 4.42587 4.54359 4.62511 4.89247 4.97177 4.99929 5.03165 5.14405 5.23004 5.31164 5.42112 5.73074 5.92340 6.23683 6.28975 6.48613 6.69119 7.09108 7.42261 7.63213 8.50611 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.020485 B = 0.002889 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.526481 B = 9691.283173 C =10488.169345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C -0.005 4.005 3 Si 1.019 2.981 4 H -0.252 1.252 5 H -0.278 1.278 6 H -0.254 1.254 7 C -0.353 4.353 8 H 0.143 0.857 9 N -0.163 5.163 10 C -0.074 4.074 11 C -0.049 4.049 12 N -0.593 5.593 13 C 0.591 3.409 14 O -0.555 6.555 15 C -0.129 4.129 16 C 0.156 3.844 17 Cl 0.013 6.987 18 N -0.511 5.511 19 C 0.242 3.758 20 C -0.095 4.095 21 C -0.059 4.059 22 C -0.105 4.105 23 C 0.027 3.973 24 N -0.328 5.328 25 C -0.053 4.053 26 N -0.307 5.307 27 H 0.277 0.723 28 H 0.189 0.811 29 H 0.417 0.583 30 H 0.182 0.818 31 H 0.199 0.801 32 H 0.200 0.800 33 H 0.165 0.835 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.696 -21.804 -7.424 23.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.217 4.217 3 Si 0.838 3.162 4 H -0.176 1.176 5 H -0.203 1.203 6 H -0.178 1.178 7 C -0.485 4.485 8 H 0.160 0.840 9 N 0.068 4.932 10 C -0.225 4.225 11 C -0.155 4.155 12 N -0.237 5.237 13 C 0.376 3.624 14 O -0.432 6.432 15 C -0.246 4.246 16 C -0.010 4.010 17 Cl 0.042 6.958 18 N -0.233 5.233 19 C 0.002 3.998 20 C -0.115 4.115 21 C -0.083 4.083 22 C -0.124 4.124 23 C -0.096 4.096 24 N 0.002 4.998 25 C -0.228 4.228 26 N -0.139 5.139 27 H 0.087 0.913 28 H 0.206 0.794 29 H 0.254 0.746 30 H 0.199 0.801 31 H 0.216 0.784 32 H 0.217 0.783 33 H 0.183 0.817 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.254 -20.630 -6.785 22.344 hybrid contribution 0.443 0.699 0.201 0.851 sum 5.697 -19.932 -6.585 21.750 Atomic orbital electron populations 1.70388 1.08433 1.29281 1.36915 1.26889 0.96462 1.04348 0.94041 0.84649 0.77556 0.73688 0.80307 1.17587 1.20327 1.17794 1.20619 0.93038 0.80799 1.54003 0.84012 1.44858 1.03639 1.04776 1.39896 1.21952 0.98713 0.84084 1.17709 1.17251 0.93187 0.82657 1.22442 1.42417 1.09006 1.02949 1.69296 1.15419 0.84210 0.84190 0.78563 1.90772 1.27259 1.75217 1.49960 1.19022 1.27563 0.90503 0.87532 1.21226 1.02863 0.89829 0.87054 1.98407 1.96114 1.84170 1.17140 1.70088 1.25580 1.16850 1.10782 1.21481 1.03668 0.86410 0.88250 1.20846 1.01890 0.96032 0.92762 1.21794 0.93672 0.98981 0.93817 1.21586 0.98001 0.90410 1.02402 1.22277 1.04317 1.04101 0.78946 1.42532 1.42996 1.07849 1.06440 1.24119 0.98817 0.90927 1.08921 1.78181 0.91955 1.16288 1.27484 0.91303 0.79424 0.74621 0.80058 0.78375 0.78344 0.81745 0.81696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.25 11.81 21.66 0.26 -47.00 16 2 C -0.01 -0.28 5.50 84.95 0.47 0.19 16 3 Si 1.02 38.14 29.55 68.60 2.03 40.17 16 4 H -0.25 -8.75 7.11 99.48 0.71 -8.04 16 5 H -0.28 -10.36 7.11 99.48 0.71 -9.65 16 6 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 7 C -0.35 -18.51 10.25 84.01 0.86 -17.65 16 8 H 0.14 6.38 7.83 -2.91 -0.02 6.36 16 9 N -0.16 -9.01 3.74 -190.00 -0.71 -9.72 16 10 C -0.07 -3.40 11.49 83.37 0.96 -2.44 16 11 C -0.05 -2.29 6.90 37.74 0.26 -2.03 16 12 N -0.59 -21.83 5.45 -311.89 -1.70 -23.53 16 13 C 0.59 22.78 7.11 85.09 0.61 23.39 16 14 O -0.55 -26.05 14.26 -4.71 -0.07 -26.11 16 15 C -0.13 -4.24 6.52 39.07 0.25 -3.98 16 16 C 0.16 5.11 7.77 84.72 0.66 5.77 16 17 Cl 0.01 0.42 29.11 -2.72 -0.08 0.34 16 18 N -0.51 -15.31 11.25 -183.59 -2.07 -17.38 16 19 C 0.24 5.78 7.77 134.00 1.04 6.82 16 20 C -0.10 -1.21 10.10 22.41 0.23 -0.98 16 21 C -0.06 -0.34 10.07 22.29 0.22 -0.12 16 22 C -0.10 -0.85 10.00 22.05 0.22 -0.63 16 23 C 0.03 0.48 10.82 83.37 0.90 1.38 16 24 N -0.33 -8.38 2.96 -344.08 -1.02 -9.40 16 25 C -0.05 -2.89 10.85 85.42 0.93 -1.96 16 26 N -0.31 -18.51 10.40 -56.46 -0.59 -19.10 16 27 H 0.28 14.68 8.31 -92.71 -0.77 13.91 16 28 H 0.19 6.78 8.06 -2.91 -0.02 6.76 16 29 H 0.42 12.15 8.79 -92.71 -0.81 11.34 16 30 H 0.18 1.37 8.06 -2.91 -0.02 1.34 16 31 H 0.20 -0.67 8.06 -2.91 -0.02 -0.69 16 32 H 0.20 0.05 8.06 -2.91 -0.02 0.02 16 33 H 0.17 3.00 8.06 -2.91 -0.02 2.97 16 34 H 0.17 9.21 5.93 -2.91 -0.02 9.20 16 Total: -1.00 -82.70 326.15 4.04 -78.66 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.38 Total: 25.31 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 7.61 Total: 7.75 kcal Atomic # 7 Polarization: -120.29 SS G_CDS: -5.82 Total: -126.12 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.07 Total: -26.11 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.17 kcal Atomic # 17 Polarization: 0.42 SS G_CDS: -0.08 Total: 0.34 kcal Total: -82.70 4.04 -78.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139370886.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.307 kcal (2) G-P(sol) polarization free energy of solvation -82.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds