Wall clock time and date at job start Tue Mar 31 2020 17:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35663 * 125.69194 * 2 1 4 4 Cl 1.73602 * 125.58716 * 359.97438 * 3 2 1 5 5 C 1.35722 * 108.83130 * 179.97438 * 3 2 1 6 6 Cl 1.73598 * 126.06496 * 179.97438 * 5 3 2 7 7 C 1.39793 * 107.87380 * 0.02562 * 5 3 2 8 8 C 1.37809 * 125.69590 * 179.97438 * 2 1 3 9 9 C 1.46537 * 126.22266 * 0.03439 * 8 2 1 10 10 O 1.21718 * 119.99974 * 21.94661 * 9 8 2 11 11 N 1.34773 * 120.00140 * 201.95271 * 9 8 2 12 12 C 1.46969 * 120.59420 * 6.58764 * 11 9 8 13 13 C 1.53809 * 108.39798 * 124.75714 * 12 11 9 14 14 N 1.46967 * 108.57627 * 49.64093 * 13 12 11 15 15 C 1.36937 * 120.59326 * 124.66729 * 14 13 12 16 16 H 1.07995 * 120.00563 * 211.05906 * 15 14 13 17 17 C 1.38819 * 119.99725 * 31.05625 * 15 14 13 18 18 N 1.31615 * 120.00535 * 9.98572 * 17 15 14 19 19 Si 1.86801 * 119.99644 * 189.97969 * 17 15 14 20 20 H 1.48497 * 109.47387 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46963 * 120.00685 * 19 17 15 22 22 H 1.48504 * 109.47357 * 239.99982 * 19 17 15 23 23 C 1.46954 * 118.81373 * 304.64306 * 14 13 12 24 24 C 1.46961 * 120.59933 * 186.87184 * 11 9 8 25 25 H 1.09007 * 109.47013 * 85.53194 * 1 2 3 26 26 H 1.08998 * 109.46963 * 205.52859 * 1 2 3 27 27 H 1.09007 * 109.46973 * 325.53361 * 1 2 3 28 28 H 1.08001 * 126.43852 * 179.73492 * 7 5 3 29 29 H 1.08991 * 109.61313 * 244.54413 * 12 11 9 30 30 H 1.09004 * 109.60572 * 5.05580 * 12 11 9 31 31 H 1.09004 * 109.74597 * 289.85284 * 13 12 11 32 32 H 1.08998 * 109.53403 * 169.30640 * 13 12 11 33 33 H 0.96996 * 120.00380 * 179.97438 * 18 17 15 34 34 H 1.08997 * 109.61570 * 295.48351 * 23 14 13 35 35 H 1.09004 * 109.60970 * 174.97218 * 23 14 13 36 36 H 1.09004 * 109.61010 * 354.94763 * 24 11 9 37 37 H 1.08996 * 109.61284 * 115.45725 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2565 1.1018 0.0000 4 17 1.6993 2.7460 -0.0006 5 6 3.5554 0.7082 0.0006 6 17 4.9405 1.7547 0.0002 7 6 3.5801 -0.6896 0.0004 8 6 2.2691 -1.1192 0.0005 9 6 1.8143 -2.5122 0.0004 10 8 0.6962 -2.7873 -0.3941 11 7 2.6340 -3.4887 0.4372 12 6 3.9291 -3.1601 1.0495 13 6 3.9898 -3.8171 2.4389 14 7 3.6074 -5.2299 2.3059 15 6 4.4403 -6.2221 2.7497 16 1 4.4499 -7.1813 2.2535 17 6 5.2724 -5.9950 3.8374 18 7 5.1253 -4.9066 4.5626 19 14 6.6008 -7.2343 4.2719 20 1 6.5590 -8.3632 3.3080 21 1 7.9310 -6.5774 4.2068 22 1 6.3689 -7.7474 5.6460 23 6 2.3149 -5.5587 1.6886 24 6 2.2517 -4.9015 0.3042 25 1 -0.3633 0.0801 -1.0246 26 1 -0.3633 -0.9273 0.4429 27 1 -0.3633 0.8473 0.5816 28 1 4.4602 -1.3156 -0.0033 29 1 4.7364 -3.5428 0.4254 30 1 4.0222 -2.0788 1.1502 31 1 3.2989 -3.3133 3.1150 32 1 5.0046 -3.7481 2.8307 33 1 5.7065 -4.7481 5.3228 34 1 1.5049 -5.1789 2.3111 35 1 2.2237 -6.6400 1.5847 36 1 1.2369 -4.9706 -0.0875 37 1 2.9425 -5.4054 -0.3718 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152754027.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:15 Heat of formation + Delta-G solvation = 37.245766 kcal Electronic energy + Delta-G solvation = -24232.724014 eV Core-core repulsion = 20484.951555 eV Total energy + Delta-G solvation = -3747.772459 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.86378 -40.62474 -38.44655 -37.90275 -37.51867 -35.81382 -34.16500 -33.19080 -32.02023 -30.36761 -28.63698 -27.71602 -25.79686 -24.58817 -23.63005 -22.21292 -21.53306 -20.39036 -19.04703 -18.12664 -17.57154 -17.15836 -17.12201 -16.64278 -16.03680 -15.54479 -15.45455 -15.38920 -15.24126 -15.04952 -14.64293 -14.49009 -14.16395 -13.95026 -13.44737 -13.27872 -13.00822 -12.86880 -12.69911 -12.52310 -12.45197 -12.42293 -12.17828 -12.03219 -11.97383 -11.79665 -11.64763 -11.06414 -10.58664 -9.92783 -9.87011 -9.35095 -8.59954 -7.85043 -5.39095 0.07004 0.29754 0.97001 1.05749 1.50142 1.52925 1.59340 1.62579 2.04162 2.19745 2.53096 3.29679 3.32219 3.61355 3.63396 3.87149 4.21211 4.22355 4.24098 4.30909 4.39794 4.45805 4.56191 4.59023 4.64318 4.81214 4.81432 5.01324 5.10308 5.25187 5.37015 5.52036 5.58078 5.64744 5.68079 6.33141 6.40802 6.95194 7.14547 7.80473 8.34524 9.19313 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.016383 B = 0.003559 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.654724 B = 7865.849178 C = 9048.203749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.397 5.397 3 C 0.091 3.909 4 Cl 0.019 6.981 5 C -0.107 4.107 6 Cl -0.023 7.023 7 C -0.127 4.127 8 C -0.026 4.026 9 C 0.584 3.416 10 O -0.576 6.576 11 N -0.582 5.582 12 C 0.067 3.933 13 C 0.165 3.835 14 N -0.609 5.609 15 C -0.263 4.263 16 H 0.071 0.929 17 C -0.044 4.044 18 N -0.935 5.935 19 Si 0.969 3.031 20 H -0.266 1.266 21 H -0.288 1.288 22 H -0.296 1.296 23 C 0.132 3.868 24 C 0.108 3.892 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.109 0.891 28 H 0.187 0.813 29 H 0.081 0.919 30 H 0.120 0.880 31 H -0.006 1.006 32 H 0.081 0.919 33 H 0.251 0.749 34 H 0.008 0.992 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.285 13.823 -11.135 18.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.073 5.073 3 C -0.053 4.053 4 Cl 0.048 6.952 5 C -0.141 4.141 6 Cl 0.006 6.994 7 C -0.153 4.153 8 C -0.140 4.140 9 C 0.374 3.626 10 O -0.459 6.459 11 N -0.313 5.313 12 C -0.056 4.056 13 C 0.039 3.961 14 N -0.333 5.333 15 C -0.393 4.393 16 H 0.089 0.911 17 C -0.239 4.239 18 N -0.581 5.581 19 Si 0.797 3.203 20 H -0.190 1.190 21 H -0.215 1.215 22 H -0.223 1.223 23 C 0.005 3.995 24 C -0.015 4.015 25 H 0.118 0.882 26 H 0.110 0.890 27 H 0.128 0.872 28 H 0.203 0.797 29 H 0.099 0.901 30 H 0.137 0.863 31 H 0.012 0.988 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.026 0.974 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.116 13.885 -11.192 18.854 hybrid contribution 0.639 -0.343 0.785 1.068 sum -5.477 13.542 -10.407 17.936 Atomic orbital electron populations 1.22520 0.73392 1.06022 1.05722 1.43890 1.08193 1.02972 1.52243 1.20708 0.88923 0.83141 1.12530 1.98405 1.89703 1.10039 1.97067 1.19681 0.87023 0.91671 1.15758 1.98343 1.38868 1.64737 1.97453 1.21787 0.96156 0.92705 1.04605 1.19896 0.90027 0.87249 1.16861 1.16958 0.84208 0.83619 0.77837 1.90753 1.20155 1.83897 1.51072 1.47767 1.19699 1.06311 1.57481 1.23443 0.83651 1.02775 0.95722 1.21116 1.00292 0.83165 0.91543 1.44245 1.16353 1.02389 1.70282 1.19572 1.16156 0.95220 1.08362 0.91143 1.25876 1.03067 0.99380 0.95622 1.70094 1.40497 1.28530 1.18982 0.85183 0.78822 0.78939 0.77324 1.19035 1.21472 1.22313 1.21380 0.87338 0.98928 0.91838 1.22149 1.01671 0.79285 0.98422 0.88245 0.88972 0.87227 0.79654 0.90109 0.86292 0.98831 0.90136 0.93922 0.97382 0.90500 0.88896 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.23 10.34 127.77 1.32 2.55 16 2 N -0.40 -9.89 3.17 -522.92 -1.66 -11.55 16 3 C 0.09 2.14 7.39 83.52 0.62 2.76 16 4 Cl 0.02 0.36 28.60 -2.72 -0.08 0.28 16 5 C -0.11 -2.63 6.66 22.06 0.15 -2.48 16 6 Cl -0.02 -0.50 29.12 -2.72 -0.08 -0.58 16 7 C -0.13 -3.30 8.52 22.58 0.19 -3.11 16 8 C -0.03 -0.74 6.53 40.30 0.26 -0.48 16 9 C 0.58 19.38 7.49 86.41 0.65 20.02 16 10 O -0.58 -20.88 14.58 -4.41 -0.06 -20.94 16 11 N -0.58 -19.80 2.94 -822.02 -2.42 -22.22 16 12 C 0.07 2.28 5.39 86.56 0.47 2.75 16 13 C 0.17 7.47 5.48 86.56 0.47 7.94 16 14 N -0.61 -29.04 2.96 -697.36 -2.07 -31.10 16 15 C -0.26 -13.65 9.59 84.04 0.81 -12.84 16 16 H 0.07 3.54 7.85 -2.91 -0.02 3.52 16 17 C -0.04 -2.32 5.07 84.86 0.43 -1.89 16 18 N -0.94 -52.71 10.95 21.65 0.24 -52.47 16 19 Si 0.97 42.80 29.56 68.60 2.03 44.83 16 20 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 21 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.30 -13.30 7.11 99.48 0.71 -12.60 16 23 C 0.13 5.28 6.67 86.42 0.58 5.86 16 24 C 0.11 3.65 6.60 86.42 0.57 4.22 16 25 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 26 H 0.09 2.13 6.68 -2.39 -0.02 2.11 16 27 H 0.11 1.58 7.89 -2.38 -0.02 1.56 16 28 H 0.19 4.38 5.75 -2.91 -0.02 4.36 16 29 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.12 3.58 3.61 -2.39 -0.01 3.57 16 31 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 32 H 0.08 4.07 5.96 -2.39 -0.01 4.06 16 33 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 34 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.08 2.90 7.93 -2.38 -0.02 2.88 16 36 H 0.09 2.99 6.99 -2.38 -0.02 2.97 16 37 H 0.08 2.51 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -62.25 330.62 3.54 -58.71 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 1.12 Total: 9.75 kcal Atomic # 6 Polarization: 18.78 SS G_CDS: 6.51 Total: 25.29 kcal Atomic # 7 Polarization: -111.43 SS G_CDS: -5.90 Total: -117.34 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.06 Total: -20.94 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.16 Total: -0.30 kcal Total: -62.25 3.54 -58.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152754027.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.961 kcal (2) G-P(sol) polarization free energy of solvation -62.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds