Wall clock time and date at job start Tue Mar 31 2020 16:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47419 * 93.76592 * 3 2 1 5 5 C 1.36951 * 120.00179 * 97.39225 * 4 3 2 6 6 H 1.07994 * 120.00274 * 157.78817 * 5 4 3 7 7 C 1.38993 * 119.99606 * 337.78216 * 5 4 3 8 8 N 1.31394 * 120.00514 * 356.89954 * 7 5 4 9 9 Si 1.86806 * 119.99644 * 176.89187 * 7 5 4 10 10 H 1.48504 * 109.46810 * 90.00198 * 9 7 5 11 11 H 1.48498 * 109.47066 * 210.00552 * 9 7 5 12 12 H 1.48508 * 109.47134 * 330.00579 * 9 7 5 13 13 C 1.34773 * 119.99785 * 277.39697 * 4 3 2 14 14 O 1.21624 * 120.00075 * 176.48180 * 13 4 3 15 15 C 1.47433 * 120.00054 * 356.75361 * 13 4 3 16 16 C 1.36684 * 125.77454 * 187.82377 * 15 13 4 17 17 N 1.35104 * 106.78204 * 179.97438 * 16 15 13 18 18 C 1.40215 * 126.61174 * 179.97438 * 17 16 15 19 19 C 1.38862 * 120.05947 * 180.02562 * 18 17 16 20 20 C 1.38105 * 119.95834 * 180.02562 * 19 18 17 21 21 C 1.38279 * 120.08093 * 359.97438 * 20 19 18 22 22 C 1.38375 * 120.11968 * 359.97438 * 21 20 19 23 23 Cl 1.73599 * 119.98064 * 180.02562 * 22 21 20 24 24 C 1.38260 * 120.03768 * 359.77080 * 22 21 20 25 25 N 1.40213 * 106.77447 * 359.97438 * 17 16 15 26 26 N 1.28745 * 108.40674 * 359.74942 * 25 17 16 27 27 H 1.09003 * 109.47639 * 333.76307 * 3 2 1 28 28 H 1.09003 * 109.47037 * 213.76313 * 3 2 1 29 29 H 0.97005 * 120.00270 * 179.97438 * 8 7 5 30 30 H 1.07998 * 126.61273 * 0.02562 * 16 15 13 31 31 H 1.07993 * 120.01611 * 359.97438 * 19 18 17 32 32 H 1.08000 * 119.95471 * 179.97438 * 20 19 18 33 33 H 1.08006 * 119.93811 * 180.02562 * 21 20 19 34 34 H 1.07997 * 120.04044 * 180.24953 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0963 0.0916 -1.3783 5 6 3.4679 1.3044 -1.8945 6 1 4.1426 1.3491 -2.7365 7 6 2.9765 2.4779 -1.3347 8 7 2.1084 2.4229 -0.3499 9 14 3.5505 4.1334 -1.9823 10 1 2.6523 4.5740 -3.0798 11 1 3.5178 5.1328 -0.8844 12 1 4.9378 4.0094 -2.4976 13 6 3.1797 -1.0183 -2.1382 14 8 3.5240 -0.9343 -3.3016 15 6 2.8479 -2.3337 -1.5608 16 6 3.0333 -3.5433 -2.1696 17 7 2.6015 -4.4862 -1.3037 18 6 2.6017 -5.8732 -1.5091 19 6 2.1226 -6.7228 -0.5206 20 6 2.1242 -8.0886 -0.7250 21 6 2.6019 -8.6112 -1.9128 22 6 3.0791 -7.7675 -2.9004 23 17 3.6773 -8.4274 -4.3905 24 6 3.0748 -6.3991 -2.7032 25 7 2.1531 -3.8102 -0.1600 26 7 2.3180 -2.5467 -0.3437 27 1 2.9717 -0.9210 0.4543 28 1 2.9708 0.8552 0.5712 29 1 1.7657 3.2419 0.0410 30 1 3.4462 -3.7129 -3.1531 31 1 1.7497 -6.3157 0.4075 32 1 1.7520 -8.7493 0.0440 33 1 2.6017 -9.6797 -2.0703 34 1 3.4435 -5.7404 -3.4755 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189270870.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:13 Heat of formation + Delta-G solvation = 125.965962 kcal Electronic energy + Delta-G solvation = -24444.928487 eV Core-core repulsion = 20599.895731 eV Total energy + Delta-G solvation = -3845.032756 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.058 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.54423 -40.68638 -40.15553 -37.64246 -37.61804 -36.19854 -35.71156 -33.75153 -32.43890 -31.77182 -30.89692 -29.20071 -27.16279 -25.51651 -24.85443 -23.27943 -22.64048 -21.29353 -19.81272 -19.69997 -18.23059 -17.92673 -17.25307 -17.15125 -16.78978 -16.61589 -16.22808 -15.87924 -15.57599 -15.35644 -14.90486 -14.86601 -14.68633 -14.63664 -13.78158 -13.54146 -13.39644 -13.20417 -13.13712 -13.02140 -12.90655 -12.68990 -12.50075 -12.41236 -12.08680 -12.04569 -12.00999 -11.71670 -11.15861 -10.80225 -10.59156 -10.07560 -9.97444 -9.63762 -8.36929 -6.06183 -0.72539 -0.04578 0.56824 0.64372 0.69415 1.11853 1.47990 1.49222 1.61216 1.91435 2.19739 2.33113 2.43218 2.45676 2.81983 3.06783 3.15757 3.37679 3.63037 3.69935 3.77524 3.83946 3.92975 4.01285 4.16932 4.25736 4.50318 4.54362 4.84587 4.97903 5.03612 5.11369 5.16051 5.32290 5.43169 5.66715 5.96472 6.31760 6.75434 7.00984 7.04321 7.23664 7.77857 8.61353 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.022840 B = 0.002841 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.606178 B = 9852.051003 C =10858.760267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C 0.279 3.721 3 C 0.221 3.779 4 N -0.432 5.432 5 C -0.332 4.332 6 H 0.097 0.903 7 C 0.001 3.999 8 N -0.897 5.897 9 Si 1.000 3.000 10 H -0.284 1.284 11 H -0.271 1.271 12 H -0.259 1.259 13 C 0.520 3.480 14 O -0.602 6.602 15 C -0.087 4.087 16 C 0.093 3.907 17 N -0.305 5.305 18 C 0.125 3.875 19 C -0.108 4.108 20 C -0.072 4.072 21 C -0.096 4.096 22 C -0.021 4.021 23 Cl -0.052 7.052 24 C -0.123 4.123 25 N -0.072 5.072 26 N -0.219 5.219 27 H 0.122 0.878 28 H 0.138 0.862 29 H 0.277 0.723 30 H 0.232 0.768 31 H 0.146 0.854 32 H 0.181 0.819 33 H 0.171 0.829 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.806 -23.331 -0.090 23.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.202 5.202 2 C -0.038 4.038 3 C 0.094 3.906 4 N -0.149 5.149 5 C -0.460 4.460 6 H 0.115 0.885 7 C -0.201 4.201 8 N -0.535 5.535 9 Si 0.823 3.177 10 H -0.211 1.211 11 H -0.195 1.195 12 H -0.183 1.183 13 C 0.308 3.692 14 O -0.487 6.487 15 C -0.225 4.225 16 C -0.060 4.060 17 N -0.085 5.085 18 C 0.034 3.966 19 C -0.128 4.128 20 C -0.091 4.091 21 C -0.115 4.115 22 C -0.049 4.049 23 Cl -0.023 7.023 24 C -0.145 4.145 25 N -0.050 5.050 26 N -0.093 5.093 27 H 0.139 0.861 28 H 0.155 0.845 29 H 0.088 0.912 30 H 0.248 0.752 31 H 0.163 0.837 32 H 0.199 0.801 33 H 0.188 0.812 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.663 -23.273 0.756 23.437 hybrid contribution 0.794 1.337 -1.398 2.091 sum 3.458 -21.937 -0.642 22.217 Atomic orbital electron populations 1.80824 1.14670 1.14951 1.09792 1.29464 0.95512 0.87663 0.91130 1.19307 0.80595 1.05388 0.85320 1.43580 1.54199 1.06583 1.10576 1.19891 1.27157 0.81884 1.17018 0.88502 1.26175 0.94808 1.03047 0.96042 1.69885 1.28806 1.30410 1.24449 0.84811 0.78881 0.76272 0.77689 1.21075 1.19533 1.18290 1.17017 0.84175 0.82697 0.85269 1.90614 1.54824 1.86363 1.16886 1.21621 1.11587 0.95863 0.93392 1.23601 0.97608 0.86410 0.98374 1.47648 1.41559 1.06223 1.13029 1.17707 1.04428 0.77413 0.97087 1.21311 0.98758 0.94065 0.98700 1.21438 0.96623 0.93304 0.97693 1.21630 0.96351 1.01821 0.91708 1.20694 1.01824 0.92180 0.90183 1.98411 1.86415 1.85355 1.32133 1.20866 1.01968 0.95345 0.96284 1.81908 1.20318 0.98121 1.04698 1.74777 1.10957 1.08270 1.15260 0.86060 0.84504 0.91228 0.75169 0.83666 0.80135 0.81154 0.83135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -27.35 18.54 20.00 0.37 -26.98 16 2 C 0.28 13.83 12.61 89.44 1.13 14.96 16 3 C 0.22 9.98 4.75 84.57 0.40 10.38 16 4 N -0.43 -21.59 2.61 -649.12 -1.69 -23.28 16 5 C -0.33 -17.44 9.31 84.07 0.78 -16.66 16 6 H 0.10 5.23 7.41 -2.91 -0.02 5.20 16 7 C 0.00 0.05 5.26 84.94 0.45 0.50 16 8 N -0.90 -45.52 8.86 21.67 0.19 -45.32 16 9 Si 1.00 40.28 29.55 68.60 2.03 42.31 16 10 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 12 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 13 C 0.52 25.09 7.53 86.67 0.65 25.74 16 14 O -0.60 -31.54 16.59 -4.11 -0.07 -31.60 16 15 C -0.09 -3.46 6.64 40.80 0.27 -3.19 16 16 C 0.09 2.89 10.62 83.83 0.89 3.78 16 17 N -0.31 -8.64 3.82 -186.83 -0.71 -9.35 16 18 C 0.12 2.63 6.69 38.08 0.25 2.88 16 19 C -0.11 -1.78 9.68 22.39 0.22 -1.56 16 20 C -0.07 -0.68 10.04 22.25 0.22 -0.46 16 21 C -0.10 -0.91 9.83 22.31 0.22 -0.69 16 22 C -0.02 -0.30 6.32 22.31 0.14 -0.15 16 23 Cl -0.05 -0.71 28.95 -2.72 -0.08 -0.79 16 24 C -0.12 -2.13 9.25 22.41 0.21 -1.92 16 25 N -0.07 -2.46 13.12 37.02 0.49 -1.97 16 26 N -0.22 -8.57 7.97 -49.99 -0.40 -8.97 16 27 H 0.12 4.91 5.46 -2.39 -0.01 4.90 16 28 H 0.14 6.26 6.07 -2.39 -0.01 6.25 16 29 H 0.28 13.49 8.31 -92.70 -0.77 12.72 16 30 H 0.23 5.55 7.13 -2.91 -0.02 5.53 16 31 H 0.15 2.47 7.73 -2.91 -0.02 2.45 16 32 H 0.18 0.45 8.06 -2.91 -0.02 0.42 16 33 H 0.17 0.66 8.06 -2.91 -0.02 0.63 16 34 H 0.15 2.37 6.81 -2.91 -0.02 2.35 16 Total: -1.00 -69.12 324.87 7.15 -61.97 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 1.19 Total: 10.39 kcal Atomic # 6 Polarization: 27.77 SS G_CDS: 5.83 Total: 33.61 kcal Atomic # 7 Polarization: -114.12 SS G_CDS: -1.76 Total: -115.88 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.07 Total: -31.60 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.79 kcal Total: -69.12 7.15 -61.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189270870.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.931 kcal (2) G-P(sol) polarization free energy of solvation -69.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds