Wall clock time and date at job start Tue Mar 31 2020 16:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35983 * 117.00091 * 2 1 4 4 C 1.38723 * 120.00001 * 359.97438 * 3 2 1 5 5 C 1.38108 * 119.99987 * 180.30376 * 4 3 2 6 6 C 1.38719 * 119.99961 * 359.43918 * 5 4 3 7 7 O 1.35981 * 120.00116 * 180.25997 * 6 5 4 8 8 S 1.52195 * 113.99889 * 270.29622 * 7 6 5 9 9 O 1.42100 * 104.27628 * 191.07169 * 8 7 6 10 10 O 1.42098 * 104.28086 * 318.92978 * 8 7 6 11 11 C 1.81404 * 104.44672 * 75.00349 * 8 7 6 12 12 C 1.53001 * 109.47103 * 179.97438 * 11 8 7 13 13 C 1.50696 * 109.47392 * 179.97438 * 12 11 8 14 14 H 1.07998 * 119.99672 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00369 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99871 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00187 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47072 * 59.99663 * 17 15 13 19 19 H 1.48497 * 109.47026 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46933 * 299.99583 * 17 15 13 21 21 C 1.38687 * 119.99738 * 0.56089 * 6 5 4 22 22 N 1.48006 * 119.99820 * 179.74503 * 21 6 5 23 23 O 1.21799 * 119.99950 * 179.97438 * 22 21 6 24 24 O 1.21807 * 120.00076 * 359.97438 * 22 21 6 25 25 C 1.38149 * 119.99976 * 359.71674 * 21 6 5 26 26 H 1.09006 * 109.47071 * 60.00312 * 1 2 3 27 27 H 1.08997 * 109.47521 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47412 * 300.00576 * 1 2 3 29 29 H 1.08002 * 119.99739 * 0.02562 * 4 3 2 30 30 H 1.07998 * 120.00324 * 179.70489 * 5 4 3 31 31 H 1.08998 * 109.46634 * 299.99397 * 11 8 7 32 32 H 1.08998 * 109.47058 * 60.00001 * 11 8 7 33 33 H 1.09004 * 109.47454 * 299.99824 * 12 11 8 34 34 H 1.09001 * 109.47056 * 59.99608 * 12 11 8 35 35 H 0.96999 * 120.00092 * 180.02562 * 16 15 13 36 36 H 1.08005 * 119.99916 * 180.02562 * 25 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2908 2.3750 -0.0005 5 6 1.9178 3.6056 -0.0069 6 6 3.3031 3.6782 -0.0010 7 8 3.9205 4.8898 -0.0019 8 16 4.2013 5.4404 -1.3926 9 8 5.0622 6.5476 -1.1640 10 8 4.6414 4.3111 -2.1344 11 6 2.5843 6.0044 -1.9911 12 6 2.7359 6.5869 -3.3977 13 6 1.3926 7.0549 -3.8951 14 1 0.5181 6.9472 -3.2706 15 6 1.2798 7.6196 -5.1478 16 7 2.3446 7.7503 -5.9085 17 14 -0.3855 8.1990 -5.7647 18 1 -0.9158 9.2430 -4.8514 19 1 -0.2383 8.7644 -7.1299 20 1 -1.3262 7.0505 -5.8029 21 6 4.0584 2.5150 -0.0004 22 7 5.5365 2.5925 0.0002 23 8 6.1998 1.5710 0.0011 24 8 6.0895 3.6778 -0.0002 25 6 3.4312 1.2841 0.0001 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 0.2123 2.3185 -0.0005 30 1 1.3297 4.5113 -0.0121 31 1 1.8933 5.1619 -2.0189 32 1 2.1960 6.7711 -1.3206 33 1 3.4270 7.4294 -3.3696 34 1 3.1245 5.8206 -4.0684 35 1 2.2654 8.1479 -6.7897 36 1 4.0194 0.3783 0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264701832.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:33 Heat of formation + Delta-G solvation = -111.564124 kcal Electronic energy + Delta-G solvation = -26972.793615 eV Core-core repulsion = 22747.610066 eV Total energy + Delta-G solvation = -4225.183549 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.070 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.53582 -41.16760 -40.16644 -37.46307 -36.85011 -36.50498 -35.70960 -34.06920 -32.58404 -31.33168 -30.68648 -28.00980 -26.63105 -25.85996 -24.01035 -22.92918 -21.94107 -20.78035 -19.76523 -18.84983 -18.38142 -17.91112 -17.75184 -17.39634 -17.26857 -16.67654 -16.40394 -15.96238 -15.38618 -14.89704 -14.68102 -14.62337 -14.07558 -13.64520 -13.48461 -13.33493 -12.80543 -12.59891 -12.50265 -11.95323 -11.87035 -11.82758 -11.80397 -11.61377 -11.57772 -11.20126 -11.16967 -11.11660 -11.09172 -10.54448 -10.53227 -10.19048 -9.86234 -9.35445 -9.00803 -8.59123 -6.20854 -4.27956 -0.58620 0.07520 0.69335 1.05097 1.16247 2.15417 2.52896 2.65089 3.19669 3.25224 3.26765 3.71099 3.85898 3.96518 4.09826 4.20156 4.28200 4.32195 4.50973 4.59719 4.62304 4.88801 4.95966 5.13441 5.15292 5.22762 5.30279 5.37842 5.43059 5.79314 6.24548 6.26174 6.48484 7.17109 7.22760 7.57090 7.69955 8.05420 8.74483 9.37177 10.90050 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.012280 B = 0.004381 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.668045 B = 6389.128023 C = 8075.487221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.301 6.301 3 C 0.144 3.856 4 C -0.141 4.141 5 C -0.089 4.089 6 C 0.112 3.888 7 O -0.659 6.659 8 S 2.573 3.427 9 O -0.914 6.914 10 O -0.960 6.960 11 C -0.616 4.616 12 C 0.031 3.969 13 C -0.525 4.525 14 H 0.061 0.939 15 C 0.060 3.940 16 N -0.888 5.888 17 Si 0.902 3.098 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.276 1.276 21 C 0.012 3.988 22 N 0.037 4.963 23 O -0.140 6.140 24 O -0.143 6.143 25 C -0.076 4.076 26 H 0.066 0.934 27 H 0.110 0.890 28 H 0.063 0.937 29 H 0.163 0.837 30 H 0.172 0.828 31 H 0.119 0.881 32 H 0.129 0.871 33 H 0.037 0.963 34 H 0.036 0.964 35 H 0.267 0.733 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.832 -15.252 14.507 22.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.214 6.214 3 C 0.096 3.904 4 C -0.160 4.160 5 C -0.109 4.109 6 C 0.068 3.932 7 O -0.616 6.616 8 S 2.672 3.328 9 O -0.913 6.913 10 O -0.958 6.958 11 C -0.747 4.747 12 C -0.008 4.008 13 C -0.564 4.564 14 H 0.080 0.920 15 C -0.144 4.144 16 N -0.525 5.525 17 Si 0.729 3.271 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.201 1.201 21 C -0.073 4.073 22 N 0.560 4.440 23 O -0.359 6.359 24 O -0.360 6.360 25 C -0.096 4.096 26 H 0.085 0.915 27 H 0.128 0.872 28 H 0.081 0.919 29 H 0.180 0.820 30 H 0.189 0.811 31 H 0.138 0.862 32 H 0.148 0.852 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.607 -15.432 14.564 22.224 hybrid contribution -1.291 0.863 -0.587 1.660 sum -7.898 -14.570 13.976 21.679 Atomic orbital electron populations 1.23310 0.76807 1.05222 1.02205 1.86161 1.22535 1.24896 1.87789 1.18617 0.90925 0.85423 0.95436 1.21570 1.02025 0.90605 1.01821 1.21363 0.90831 1.00673 0.98031 1.17490 0.90698 0.80149 1.04857 1.85916 1.78653 1.37218 1.59798 1.06320 0.78782 0.75208 0.72461 1.93600 1.62646 1.53390 1.81628 1.93569 1.80744 1.50344 1.71180 1.30830 1.19486 1.11541 1.12812 1.18965 1.00186 0.96886 0.84715 1.20907 0.92904 1.41507 1.01073 0.92048 1.25068 0.97151 0.95510 0.96643 1.69941 1.28734 1.43460 1.10366 0.86509 0.83449 0.79059 0.78125 1.20006 1.20962 1.20123 1.20871 0.81060 0.94669 1.10703 1.43070 1.02304 1.00808 0.97851 1.94510 1.63627 1.25226 1.52577 1.94589 1.72584 1.16067 1.52787 1.20009 0.92722 0.97033 0.99833 0.91536 0.87199 0.91852 0.81956 0.81074 0.86229 0.85240 0.94445 0.94608 0.92301 0.80794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.07 9.81 101.05 0.99 1.06 16 2 O -0.30 -2.21 10.50 -19.69 -0.21 -2.42 16 3 C 0.14 1.27 6.69 -39.24 -0.26 1.00 16 4 C -0.14 -1.07 9.03 -39.45 -0.36 -1.42 16 5 C -0.09 -0.88 8.45 -39.45 -0.33 -1.22 16 6 C 0.11 1.61 4.79 -39.24 -0.19 1.43 16 7 O -0.66 -11.08 8.53 -55.16 -0.47 -11.55 16 8 S 2.57 50.79 4.38 -107.50 -0.47 50.32 16 9 O -0.91 -20.90 18.09 -67.04 -1.21 -22.11 16 10 O -0.96 -20.77 14.89 -69.91 -1.04 -21.81 16 11 C -0.62 -11.46 5.39 37.16 0.20 -11.26 16 12 C 0.03 0.78 4.98 -27.88 -0.14 0.64 16 13 C -0.52 -13.94 9.11 -34.44 -0.31 -14.25 16 14 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -25.84 13.29 55.43 0.74 -25.11 16 17 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 C 0.01 0.18 6.10 -79.82 -0.49 -0.31 16 22 N 0.04 0.65 4.20 34.02 0.14 0.79 16 23 O -0.14 -2.31 18.45 -29.46 -0.54 -2.86 16 24 O -0.14 -2.87 15.38 -39.18 -0.60 -3.48 16 25 C -0.08 -0.85 9.49 -39.45 -0.37 -1.22 16 26 H 0.07 0.19 7.66 -51.93 -0.40 -0.21 16 27 H 0.11 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.06 0.12 7.66 -51.93 -0.40 -0.28 16 29 H 0.16 0.60 6.29 -52.49 -0.33 0.27 16 30 H 0.17 1.24 7.46 -52.49 -0.39 0.85 16 31 H 0.12 1.85 6.57 -51.93 -0.34 1.51 16 32 H 0.13 2.09 8.14 -51.93 -0.42 1.66 16 33 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.17 1.63 7.61 -52.48 -0.40 1.23 16 LS Contribution 329.73 15.07 4.97 4.97 Total: -1.00 -36.67 329.73 -8.57 -45.24 By element: Atomic # 1 Polarization: 0.10 SS G_CDS: -3.49 Total: -3.39 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: -1.36 Total: -24.02 kcal Atomic # 7 Polarization: -25.20 SS G_CDS: 0.88 Total: -24.32 kcal Atomic # 8 Polarization: -60.14 SS G_CDS: -4.08 Total: -64.22 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 50.79 SS G_CDS: -0.47 Total: 50.32 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -36.67 -8.57 -45.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264701832.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.324 kcal (2) G-P(sol) polarization free energy of solvation -36.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds