Wall clock time and date at job start Tue Mar 31 2020 16:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35983 * 117.00091 * 2 1 4 4 C 1.38723 * 120.00001 * 359.97438 * 3 2 1 5 5 C 1.38108 * 119.99987 * 180.30376 * 4 3 2 6 6 C 1.38719 * 119.99961 * 359.43918 * 5 4 3 7 7 O 1.35981 * 120.00116 * 180.25997 * 6 5 4 8 8 S 1.52195 * 113.99889 * 270.29622 * 7 6 5 9 9 O 1.42100 * 104.27628 * 191.07169 * 8 7 6 10 10 O 1.42098 * 104.28086 * 318.92978 * 8 7 6 11 11 C 1.81404 * 104.44672 * 75.00349 * 8 7 6 12 12 C 1.53001 * 109.47103 * 179.97438 * 11 8 7 13 13 C 1.50696 * 109.47392 * 179.97438 * 12 11 8 14 14 H 1.07998 * 119.99672 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00369 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99871 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00187 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47072 * 59.99663 * 17 15 13 19 19 H 1.48497 * 109.47026 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46933 * 299.99583 * 17 15 13 21 21 C 1.38687 * 119.99738 * 0.56089 * 6 5 4 22 22 N 1.48006 * 119.99820 * 179.74503 * 21 6 5 23 23 O 1.21799 * 119.99950 * 179.97438 * 22 21 6 24 24 O 1.21807 * 120.00076 * 359.97438 * 22 21 6 25 25 C 1.38149 * 119.99976 * 359.71674 * 21 6 5 26 26 H 1.09006 * 109.47071 * 60.00312 * 1 2 3 27 27 H 1.08997 * 109.47521 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47412 * 300.00576 * 1 2 3 29 29 H 1.08002 * 119.99739 * 0.02562 * 4 3 2 30 30 H 1.07998 * 120.00324 * 179.70489 * 5 4 3 31 31 H 1.08998 * 109.46634 * 299.99397 * 11 8 7 32 32 H 1.08998 * 109.47058 * 60.00001 * 11 8 7 33 33 H 1.09004 * 109.47454 * 299.99824 * 12 11 8 34 34 H 1.09001 * 109.47056 * 59.99608 * 12 11 8 35 35 H 0.96999 * 120.00092 * 180.02562 * 16 15 13 36 36 H 1.08005 * 119.99916 * 180.02562 * 25 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2908 2.3750 -0.0005 5 6 1.9178 3.6056 -0.0069 6 6 3.3031 3.6782 -0.0010 7 8 3.9205 4.8898 -0.0019 8 16 4.2013 5.4404 -1.3926 9 8 5.0622 6.5476 -1.1640 10 8 4.6414 4.3111 -2.1344 11 6 2.5843 6.0044 -1.9911 12 6 2.7359 6.5869 -3.3977 13 6 1.3926 7.0549 -3.8951 14 1 0.5181 6.9472 -3.2706 15 6 1.2798 7.6196 -5.1478 16 7 2.3446 7.7503 -5.9085 17 14 -0.3855 8.1990 -5.7647 18 1 -0.9158 9.2430 -4.8514 19 1 -0.2383 8.7644 -7.1299 20 1 -1.3262 7.0505 -5.8029 21 6 4.0584 2.5150 -0.0004 22 7 5.5365 2.5925 0.0002 23 8 6.1998 1.5710 0.0011 24 8 6.0895 3.6778 -0.0002 25 6 3.4312 1.2841 0.0001 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 0.2123 2.3185 -0.0005 30 1 1.3297 4.5113 -0.0121 31 1 1.8933 5.1619 -2.0189 32 1 2.1960 6.7711 -1.3206 33 1 3.4270 7.4294 -3.3696 34 1 3.1245 5.8206 -4.0684 35 1 2.2654 8.1479 -6.7897 36 1 4.0194 0.3783 0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264701832.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:27 Heat of formation + Delta-G solvation = -138.321077 kcal Electronic energy + Delta-G solvation = -26973.953884 eV Core-core repulsion = 22747.610066 eV Total energy + Delta-G solvation = -4226.343818 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.070 amu Computer time = 4.86 seconds Orbital eigenvalues (eV) -43.71647 -42.25651 -40.99294 -38.49525 -38.24916 -37.80905 -37.32578 -35.97874 -33.56193 -33.12102 -31.49629 -28.56427 -27.75535 -27.57758 -25.01328 -23.96276 -23.65333 -22.03305 -20.73476 -20.09650 -19.73468 -19.25405 -18.85104 -18.61054 -18.39347 -18.18187 -17.26627 -16.87963 -16.75789 -16.55048 -15.74289 -15.58887 -15.36142 -14.80549 -14.46669 -14.42814 -14.14682 -13.82703 -13.69857 -13.55182 -13.47631 -13.36862 -12.97388 -12.92401 -12.85732 -12.58898 -12.48579 -12.32573 -12.28295 -12.22465 -12.18228 -11.78886 -11.18823 -11.00670 -10.63775 -9.80733 -8.25410 -6.40738 -1.71679 -1.08487 -0.38862 -0.05305 0.07725 0.89099 1.43530 1.47251 1.55438 1.84165 1.93339 2.37920 2.51781 2.68215 2.91603 3.08767 3.17454 3.38228 3.52102 3.61803 3.81845 3.90574 4.14746 4.30492 4.35030 4.46513 4.54837 4.59411 4.63752 4.75462 4.86615 5.05833 5.18811 5.20036 5.66875 5.95692 6.01336 6.22901 6.72843 7.30193 8.86983 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.012280 B = 0.004381 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.668045 B = 6389.128023 C = 8075.487221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.308 6.308 3 C 0.161 3.839 4 C -0.118 4.118 5 C -0.079 4.079 6 C 0.064 3.936 7 O -0.654 6.654 8 S 2.584 3.416 9 O -0.965 6.965 10 O -0.989 6.989 11 C -0.600 4.600 12 C 0.022 3.978 13 C -0.536 4.536 14 H 0.087 0.913 15 C -0.005 4.005 16 N -0.937 5.937 17 Si 0.977 3.023 18 H -0.262 1.262 19 H -0.290 1.290 20 H -0.257 1.257 21 C -0.013 4.013 22 N 0.034 4.966 23 O -0.112 6.112 24 O -0.226 6.226 25 C -0.081 4.081 26 H 0.079 0.921 27 H 0.126 0.874 28 H 0.086 0.914 29 H 0.215 0.785 30 H 0.205 0.795 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.005 0.995 34 H 0.009 0.991 35 H 0.267 0.733 36 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.036 -17.121 15.602 26.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.220 6.220 3 C 0.112 3.888 4 C -0.136 4.136 5 C -0.099 4.099 6 C 0.020 3.980 7 O -0.612 6.612 8 S 2.686 3.314 9 O -0.963 6.963 10 O -0.988 6.988 11 C -0.731 4.731 12 C -0.017 4.017 13 C -0.575 4.575 14 H 0.105 0.895 15 C -0.203 4.203 16 N -0.576 5.576 17 Si 0.800 3.200 18 H -0.187 1.187 19 H -0.216 1.216 20 H -0.181 1.181 21 C -0.099 4.099 22 N 0.551 4.449 23 O -0.343 6.343 24 O -0.424 6.424 25 C -0.101 4.101 26 H 0.098 0.902 27 H 0.144 0.856 28 H 0.105 0.895 29 H 0.231 0.769 30 H 0.222 0.778 31 H 0.177 0.823 32 H 0.179 0.821 33 H 0.023 0.977 34 H 0.027 0.973 35 H 0.076 0.924 36 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -11.790 -17.155 15.677 26.059 hybrid contribution 0.149 1.043 -0.836 1.345 sum -11.641 -16.113 14.841 24.807 Atomic orbital electron populations 1.23762 0.74264 1.07129 1.03942 1.86196 1.25041 1.23903 1.86855 1.18674 0.90065 0.86759 0.93287 1.22151 1.04267 0.88747 0.98421 1.21875 0.88731 1.03160 0.96147 1.18158 0.92473 0.78767 1.08602 1.85849 1.79357 1.38647 1.57323 1.05818 0.78916 0.74138 0.72533 1.93523 1.64815 1.55144 1.82803 1.93508 1.81608 1.51132 1.72502 1.30611 1.19520 1.13615 1.09338 1.18835 0.99328 0.95418 0.88088 1.21462 0.93961 1.40660 1.01448 0.89458 1.26168 1.01348 0.95704 0.97107 1.70118 1.31625 1.44980 1.10882 0.85316 0.78354 0.79161 0.77132 1.18678 1.21574 1.18149 1.21134 0.78609 0.96554 1.13607 1.43541 1.04032 1.00256 0.97043 1.94432 1.64983 1.24851 1.50062 1.94596 1.73972 1.16674 1.57187 1.20239 0.94326 0.95971 0.99518 0.90201 0.85566 0.89514 0.76861 0.77790 0.82259 0.82094 0.97650 0.97279 0.92427 0.79743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.81 113.37 1.11 1.11 16 2 O -0.31 -3.07 10.50 -93.35 -0.98 -4.05 16 3 C 0.16 2.17 6.69 22.49 0.15 2.32 16 4 C -0.12 -1.11 9.03 22.35 0.20 -0.90 16 5 C -0.08 -1.25 8.45 22.35 0.19 -1.06 16 6 C 0.06 1.77 4.79 22.49 0.11 1.88 16 7 O -0.65 -22.52 8.53 -59.42 -0.51 -23.02 16 8 S 2.58 106.24 4.38 -56.49 -0.25 106.00 16 9 O -0.96 -47.32 18.09 -118.57 -2.15 -49.47 16 10 O -0.99 -45.21 14.89 -115.83 -1.72 -46.94 16 11 C -0.60 -21.57 5.39 71.98 0.39 -21.18 16 12 C 0.02 1.12 4.98 29.85 0.15 1.27 16 13 C -0.54 -27.86 9.11 25.60 0.23 -27.63 16 14 H 0.09 3.97 7.74 -2.91 -0.02 3.95 16 15 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 16 N -0.94 -55.89 13.29 21.45 0.28 -55.60 16 17 Si 0.98 40.85 29.54 68.60 2.03 42.88 16 18 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 19 H -0.29 -12.26 7.11 99.48 0.71 -11.56 16 20 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 21 C -0.01 -0.40 6.10 36.46 0.22 -0.17 16 22 N 0.03 1.26 4.20 -46.27 -0.19 1.07 16 23 O -0.11 -3.81 18.45 18.89 0.35 -3.46 16 24 O -0.23 -9.90 15.38 28.17 0.43 -9.47 16 25 C -0.08 -1.64 9.49 22.35 0.21 -1.43 16 26 H 0.08 -0.06 7.66 -2.38 -0.02 -0.08 16 27 H 0.13 -0.21 8.14 -2.39 -0.02 -0.23 16 28 H 0.09 -0.25 7.66 -2.38 -0.02 -0.27 16 29 H 0.21 -0.18 6.29 -2.91 -0.02 -0.19 16 30 H 0.21 1.78 7.46 -2.91 -0.02 1.76 16 31 H 0.16 4.38 6.57 -2.39 -0.02 4.36 16 32 H 0.16 4.76 8.14 -2.39 -0.02 4.74 16 33 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 34 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 36 H 0.19 3.18 7.61 -2.91 -0.02 3.16 16 Total: -1.00 -87.77 329.73 1.86 -85.91 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: 1.14 Total: 1.75 kcal Atomic # 6 Polarization: -49.02 SS G_CDS: 3.43 Total: -45.59 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.09 Total: -54.53 kcal Atomic # 8 Polarization: -131.83 SS G_CDS: -4.58 Total: -136.41 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Atomic # 16 Polarization: 106.24 SS G_CDS: -0.25 Total: 106.00 kcal Total: -87.77 1.86 -85.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264701832.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.411 kcal (2) G-P(sol) polarization free energy of solvation -87.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.86 seconds