Wall clock time and date at job start Tue Mar 31 2020 15:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35929 * 116.99858 * 2 1 4 4 C 1.38747 * 120.03939 * 359.72201 * 3 2 1 5 5 C 1.38125 * 119.95279 * 179.74368 * 4 3 2 6 6 C 1.38392 * 120.04195 * 0.53222 * 5 4 3 7 7 Cl 1.73598 * 119.95653 * 179.76680 * 6 5 4 8 8 C 1.38342 * 120.08588 * 359.74167 * 6 5 4 9 9 S 1.76198 * 119.98101 * 179.97438 * 8 6 5 10 10 O 1.42106 * 106.39968 * 48.51725 * 9 8 6 11 11 O 1.42090 * 106.40479 * 181.44044 * 9 8 6 12 12 N 1.65606 * 107.21437 * 294.98125 * 9 8 6 13 13 C 1.36932 * 119.99797 * 90.00121 * 12 9 8 14 14 H 1.08000 * 119.99671 * 231.25575 * 13 12 9 15 15 C 1.38813 * 120.00755 * 51.26048 * 13 12 9 16 16 N 1.31627 * 119.99841 * 20.20088 * 15 13 12 17 17 Si 1.86795 * 120.00225 * 200.20746 * 15 13 12 18 18 H 1.48496 * 109.47461 * 59.99732 * 17 15 13 19 19 H 1.48505 * 109.47195 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47181 * 299.99522 * 17 15 13 21 21 C 1.46497 * 120.00025 * 269.99191 * 12 9 8 22 22 C 1.52998 * 117.50272 * 188.83854 * 21 12 9 23 23 C 1.52994 * 117.49651 * 120.17903 * 21 12 9 24 24 C 1.38166 * 120.04288 * 359.97438 * 8 6 5 25 25 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47366 * 299.99948 * 1 2 3 27 27 H 1.08999 * 109.46756 * 60.00564 * 1 2 3 28 28 H 1.07997 * 120.02111 * 0.02562 * 4 3 2 29 29 H 1.07993 * 119.97446 * 180.27426 * 5 4 3 30 30 H 0.96993 * 119.99946 * 174.30290 * 16 15 13 31 31 H 1.09000 * 115.54878 * 334.51661 * 21 12 9 32 32 H 1.09006 * 117.49267 * 0.02562 * 22 21 12 33 33 H 1.08993 * 117.50139 * 145.02308 * 22 21 12 34 34 H 1.09006 * 117.50252 * 214.98232 * 23 21 12 35 35 H 1.09004 * 117.50439 * 359.97438 * 23 21 12 36 36 H 1.07999 * 120.02336 * 180.02562 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2912 2.3753 -0.0058 5 6 1.9201 3.6051 -0.0005 6 6 3.3022 3.6765 -0.0004 7 17 4.0902 5.2233 0.0002 8 6 4.0565 2.5168 -0.0003 9 16 5.8160 2.6110 -0.0010 10 8 6.1687 3.5344 1.0199 11 8 6.2895 1.2717 -0.0350 12 7 6.2692 3.3039 -1.4352 13 6 6.3993 4.6639 -1.5276 14 1 5.9027 5.2011 -2.3220 15 6 7.1695 5.3521 -0.6002 16 7 8.0769 4.7119 0.1064 17 14 6.9182 7.1868 -0.3550 18 1 5.5212 7.4414 0.0793 19 1 7.8570 7.6805 0.6844 20 1 7.1763 7.8970 -1.6333 21 6 6.5311 2.4618 -2.6050 22 6 7.1431 3.1332 -3.8361 23 6 5.6756 2.6981 -3.8512 24 6 3.4311 1.2848 0.0002 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.2127 2.3199 -0.0100 29 1 1.3329 4.5114 -0.0005 30 1 8.6710 5.2050 0.6936 31 1 6.8327 1.4370 -2.3885 32 1 7.3512 4.2015 -3.7754 33 1 7.8470 2.5501 -4.4297 34 1 5.4147 1.8288 -4.4549 35 1 4.9176 3.4798 -3.8007 36 1 4.0204 0.3797 0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264864219.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:01 Heat of formation + Delta-G solvation = -38.777604 kcal Electronic energy + Delta-G solvation = -25281.870283 eV Core-core repulsion = 21500.552158 eV Total energy + Delta-G solvation = -3781.318124 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -39.89070 -37.32236 -37.14662 -35.75023 -35.26545 -34.01630 -33.26221 -31.01028 -30.62973 -29.62327 -27.22821 -24.97644 -22.80249 -22.04679 -21.55305 -20.53232 -18.89989 -18.47866 -16.53445 -16.31882 -16.17341 -15.81663 -15.72755 -15.30822 -15.02877 -14.32769 -14.03426 -13.81739 -13.54732 -13.15424 -12.87790 -12.46678 -12.27397 -12.22586 -11.81386 -11.56837 -11.40323 -11.23427 -10.95155 -10.79612 -10.60128 -10.43608 -10.35586 -10.32917 -10.23282 -10.08254 -9.92967 -9.45756 -9.32625 -8.98969 -8.60624 -7.81024 -7.49075 -6.54454 -4.12154 1.19689 1.55429 1.99592 2.72088 3.16023 3.20562 3.28885 3.37597 3.75045 4.06675 4.57629 4.74063 4.83655 4.93608 4.98438 5.04901 5.07330 5.34047 5.37378 5.50735 5.65210 5.75642 5.80843 5.87462 6.06455 6.16698 6.32499 6.33916 6.38752 6.41341 6.57736 6.71071 6.79569 7.01436 7.36231 7.47464 7.53017 8.17734 8.86258 9.29816 10.51282 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.015314 B = 0.006265 C = 0.005450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.922737 B = 4468.182111 C = 5136.753969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.096 3.904 4 C -0.171 4.171 5 C -0.104 4.104 6 C 0.009 3.991 7 Cl -0.019 7.019 8 C -0.615 4.615 9 S 2.539 3.461 10 O -0.928 6.928 11 O -1.014 7.014 12 N -0.778 5.778 13 C -0.251 4.251 14 H 0.082 0.918 15 C 0.066 3.934 16 N -0.767 5.767 17 Si 0.908 3.092 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.270 1.270 21 C 0.099 3.901 22 C -0.162 4.162 23 C -0.214 4.214 24 C -0.057 4.057 25 H 0.098 0.902 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.282 0.718 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.071 -1.767 -3.696 11.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.051 3.949 4 C -0.190 4.190 5 C -0.123 4.123 6 C -0.019 4.019 7 Cl 0.010 6.990 8 C -0.688 4.688 9 S 2.637 3.363 10 O -0.916 6.916 11 O -1.003 7.003 12 N -0.599 5.599 13 C -0.401 4.401 14 H 0.099 0.901 15 C -0.153 4.153 16 N -0.403 5.403 17 Si 0.735 3.265 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.195 1.195 21 C -0.011 4.011 22 C -0.201 4.201 23 C -0.254 4.254 24 C -0.077 4.077 25 H 0.116 0.884 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.149 0.851 29 H 0.150 0.850 30 H 0.093 0.907 31 H 0.137 0.863 32 H 0.127 0.873 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.508 -2.398 -2.625 11.093 hybrid contribution -1.303 1.106 0.087 1.711 sum -11.811 -1.291 -2.538 12.149 Atomic orbital electron populations 1.23022 0.78945 1.03705 1.01140 1.86093 1.20925 1.26845 1.89201 1.19168 0.92602 0.84058 0.99079 1.21197 0.99639 0.92020 1.06168 1.20900 0.92874 0.97633 1.00924 1.20653 0.92426 0.88923 0.99907 1.98507 1.78119 1.26302 1.96082 1.32659 1.34043 0.94885 1.07255 1.12149 0.73574 0.73159 0.77467 1.93462 1.79438 1.61487 1.57228 1.93273 1.79594 1.39695 1.87777 1.52427 1.69842 1.12493 1.25161 1.18918 1.26174 0.80940 1.14058 0.90063 1.25644 0.93706 1.00110 0.95855 1.69749 1.12459 1.37953 1.20140 0.86260 0.79309 0.82529 0.78441 1.18725 1.20244 1.19532 1.21374 1.02450 0.94970 0.82267 1.23083 0.94514 1.02443 1.00094 1.23347 0.94894 1.03162 1.03956 1.20188 0.91098 0.97571 0.98831 0.88376 0.92862 0.92806 0.85119 0.85011 0.90749 0.86275 0.87317 0.89814 0.89872 0.89019 0.83602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.82 10.50 -19.52 -0.20 -5.02 16 3 C 0.10 1.67 6.69 -39.22 -0.26 1.40 16 4 C -0.17 -2.61 9.04 -39.43 -0.36 -2.97 16 5 C -0.10 -1.74 9.82 -39.57 -0.39 -2.13 16 6 C 0.01 0.18 6.30 -39.49 -0.25 -0.07 16 7 Cl -0.02 -0.41 20.60 -51.86 -1.07 -1.48 16 8 C -0.61 -13.61 5.91 -39.57 -0.23 -13.84 16 9 S 2.54 64.34 4.95 -107.50 -0.53 63.81 16 10 O -0.93 -25.83 12.59 -57.17 -0.72 -26.55 16 11 O -1.01 -27.27 15.75 -57.17 -0.90 -28.17 16 12 N -0.78 -18.45 3.02 -53.43 -0.16 -18.61 16 13 C -0.25 -5.93 4.82 -15.06 -0.07 -6.00 16 14 H 0.08 1.82 7.82 -52.49 -0.41 1.41 16 15 C 0.07 1.63 3.70 -17.43 -0.06 1.57 16 16 N -0.77 -20.56 11.40 55.49 0.63 -19.93 16 17 Si 0.91 19.44 28.05 -169.99 -4.77 14.67 16 18 H -0.26 -5.46 6.19 56.52 0.35 -5.11 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 C 0.10 2.05 6.39 -67.94 -0.43 1.61 16 22 C -0.16 -2.88 9.85 -26.70 -0.26 -3.15 16 23 C -0.21 -3.70 10.27 -26.70 -0.27 -3.97 16 24 C -0.06 -1.16 9.49 -39.44 -0.37 -1.54 16 25 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.46 7.67 -51.93 -0.40 0.06 16 27 H 0.05 0.46 7.65 -51.93 -0.40 0.07 16 28 H 0.13 1.49 6.30 -52.49 -0.33 1.16 16 29 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 30 H 0.28 7.16 8.32 -40.82 -0.34 6.82 16 31 H 0.12 2.48 7.37 -51.93 -0.38 2.10 16 32 H 0.11 2.03 7.05 -51.93 -0.37 1.67 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 36 H 0.15 2.96 7.33 -52.49 -0.38 2.58 16 LS Contribution 319.47 15.07 4.81 4.81 Total: -1.00 -30.74 319.47 -8.86 -39.60 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -3.97 Total: 4.69 kcal Atomic # 6 Polarization: -25.84 SS G_CDS: -1.98 Total: -27.82 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.47 Total: -38.54 kcal Atomic # 8 Polarization: -57.92 SS G_CDS: -1.82 Total: -59.75 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.77 Total: 14.67 kcal Atomic # 16 Polarization: 64.34 SS G_CDS: -0.53 Total: 63.81 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.07 Total: -1.48 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.74 -8.86 -39.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264864219.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.826 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds