Wall clock time and date at job start Tue Mar 31 2020 15:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35929 * 116.99858 * 2 1 4 4 C 1.38747 * 120.03939 * 359.72201 * 3 2 1 5 5 C 1.38125 * 119.95279 * 179.74368 * 4 3 2 6 6 C 1.38392 * 120.04195 * 0.53222 * 5 4 3 7 7 Cl 1.73598 * 119.95653 * 179.76680 * 6 5 4 8 8 C 1.38342 * 120.08588 * 359.74167 * 6 5 4 9 9 S 1.76198 * 119.98101 * 179.97438 * 8 6 5 10 10 O 1.42106 * 106.39968 * 48.51725 * 9 8 6 11 11 O 1.42090 * 106.40479 * 181.44044 * 9 8 6 12 12 N 1.65606 * 107.21437 * 294.98125 * 9 8 6 13 13 C 1.36932 * 119.99797 * 90.00121 * 12 9 8 14 14 H 1.08000 * 119.99671 * 231.25575 * 13 12 9 15 15 C 1.38813 * 120.00755 * 51.26048 * 13 12 9 16 16 N 1.31627 * 119.99841 * 20.20088 * 15 13 12 17 17 Si 1.86795 * 120.00225 * 200.20746 * 15 13 12 18 18 H 1.48496 * 109.47461 * 59.99732 * 17 15 13 19 19 H 1.48505 * 109.47195 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47181 * 299.99522 * 17 15 13 21 21 C 1.46497 * 120.00025 * 269.99191 * 12 9 8 22 22 C 1.52998 * 117.50272 * 188.83854 * 21 12 9 23 23 C 1.52994 * 117.49651 * 120.17903 * 21 12 9 24 24 C 1.38166 * 120.04288 * 359.97438 * 8 6 5 25 25 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47366 * 299.99948 * 1 2 3 27 27 H 1.08999 * 109.46756 * 60.00564 * 1 2 3 28 28 H 1.07997 * 120.02111 * 0.02562 * 4 3 2 29 29 H 1.07993 * 119.97446 * 180.27426 * 5 4 3 30 30 H 0.96993 * 119.99946 * 174.30290 * 16 15 13 31 31 H 1.09000 * 115.54878 * 334.51661 * 21 12 9 32 32 H 1.09006 * 117.49267 * 0.02562 * 22 21 12 33 33 H 1.08993 * 117.50139 * 145.02308 * 22 21 12 34 34 H 1.09006 * 117.50252 * 214.98232 * 23 21 12 35 35 H 1.09004 * 117.50439 * 359.97438 * 23 21 12 36 36 H 1.07999 * 120.02336 * 180.02562 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2912 2.3753 -0.0058 5 6 1.9201 3.6051 -0.0005 6 6 3.3022 3.6765 -0.0004 7 17 4.0902 5.2233 0.0002 8 6 4.0565 2.5168 -0.0003 9 16 5.8160 2.6110 -0.0010 10 8 6.1687 3.5344 1.0199 11 8 6.2895 1.2717 -0.0350 12 7 6.2692 3.3039 -1.4352 13 6 6.3993 4.6639 -1.5276 14 1 5.9027 5.2011 -2.3220 15 6 7.1695 5.3521 -0.6002 16 7 8.0769 4.7119 0.1064 17 14 6.9182 7.1868 -0.3550 18 1 5.5212 7.4414 0.0793 19 1 7.8570 7.6805 0.6844 20 1 7.1763 7.8970 -1.6333 21 6 6.5311 2.4618 -2.6050 22 6 7.1431 3.1332 -3.8361 23 6 5.6756 2.6981 -3.8512 24 6 3.4311 1.2848 0.0002 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.2127 2.3199 -0.0100 29 1 1.3329 4.5114 -0.0005 30 1 8.6710 5.2050 0.6936 31 1 6.8327 1.4370 -2.3885 32 1 7.3512 4.2015 -3.7754 33 1 7.8470 2.5501 -4.4297 34 1 5.4147 1.8288 -4.4549 35 1 4.9176 3.4798 -3.8007 36 1 4.0204 0.3797 0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264864219.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:59 Heat of formation + Delta-G solvation = -59.630287 kcal Electronic energy + Delta-G solvation = -25282.774523 eV Core-core repulsion = 21500.552158 eV Total energy + Delta-G solvation = -3782.222365 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.15251 -38.76908 -38.63333 -37.59556 -36.91676 -36.00078 -35.05554 -32.43930 -32.38404 -30.95783 -28.15921 -26.81449 -24.21851 -23.41853 -22.96443 -22.18103 -20.69051 -19.89671 -18.29776 -17.79723 -17.65330 -17.27897 -17.10855 -16.74243 -16.68994 -16.03403 -15.50801 -15.26644 -14.98666 -14.72985 -14.32419 -14.07095 -13.71518 -13.55126 -13.39156 -13.08293 -12.90706 -12.76337 -12.47686 -12.36877 -12.21750 -12.15384 -12.10056 -12.07077 -11.82953 -11.65945 -11.55859 -11.13940 -10.91944 -10.48540 -10.36326 -9.24743 -9.18953 -8.40912 -6.00975 -0.26509 0.14188 0.17326 1.14394 1.48328 1.52653 1.63217 2.25890 2.27316 2.36632 2.84597 3.06143 3.24766 3.51164 3.62469 3.87745 4.01311 4.16855 4.22037 4.32253 4.38329 4.38821 4.43892 4.52604 4.68162 4.72781 4.82721 4.92391 4.98200 5.01995 5.09052 5.30547 5.38197 5.47666 5.58424 5.84344 6.29948 6.30109 7.02973 7.47651 8.65085 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.015314 B = 0.006265 C = 0.005450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.922737 B = 4468.182111 C = 5136.753969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.333 6.333 3 C 0.106 3.894 4 C -0.151 4.151 5 C -0.093 4.093 6 C -0.013 4.013 7 Cl -0.037 7.037 8 C -0.637 4.637 9 S 2.531 3.469 10 O -0.966 6.966 11 O -1.048 7.048 12 N -0.787 5.787 13 C -0.239 4.239 14 H 0.095 0.905 15 C 0.031 3.969 16 N -0.811 5.811 17 Si 0.947 3.053 18 H -0.255 1.255 19 H -0.285 1.285 20 H -0.245 1.245 21 C 0.054 3.946 22 C -0.148 4.148 23 C -0.185 4.185 24 C -0.085 4.085 25 H 0.122 0.878 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.183 0.817 29 H 0.168 0.832 30 H 0.279 0.721 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.614 -1.133 -5.357 15.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.247 6.247 3 C 0.060 3.940 4 C -0.170 4.170 5 C -0.112 4.112 6 C -0.041 4.041 7 Cl -0.008 7.008 8 C -0.715 4.715 9 S 2.635 3.365 10 O -0.954 6.954 11 O -1.038 7.038 12 N -0.608 5.608 13 C -0.389 4.389 14 H 0.112 0.888 15 C -0.185 4.185 16 N -0.448 5.448 17 Si 0.770 3.230 18 H -0.180 1.180 19 H -0.211 1.211 20 H -0.169 1.169 21 C -0.054 4.054 22 C -0.187 4.187 23 C -0.225 4.225 24 C -0.105 4.105 25 H 0.141 0.859 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.200 0.800 29 H 0.186 0.814 30 H 0.089 0.911 31 H 0.125 0.875 32 H 0.118 0.882 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.029 -1.783 -4.317 14.787 hybrid contribution -0.412 0.747 0.577 1.030 sum -14.441 -1.036 -3.740 14.954 Atomic orbital electron populations 1.23492 0.75722 1.06131 1.02836 1.86095 1.24167 1.25825 1.88631 1.19144 0.91635 0.85779 0.97464 1.21702 1.01921 0.90264 1.03084 1.21329 0.91319 0.99812 0.98728 1.20810 0.93896 0.87508 1.01865 1.98482 1.78918 1.27048 1.96318 1.32082 1.32554 0.96533 1.10320 1.12128 0.74531 0.72199 0.77657 1.93399 1.81066 1.62061 1.58917 1.93200 1.81054 1.41245 1.88262 1.52334 1.70126 1.12739 1.25566 1.19172 1.24931 0.81162 1.13673 0.88794 1.26400 0.93151 1.03512 0.95416 1.69856 1.13995 1.39449 1.21540 0.85650 0.79314 0.78779 0.79222 1.17999 1.21054 1.16912 1.21575 1.06552 0.94680 0.82597 1.23163 0.95682 1.02013 0.97848 1.23371 0.94445 1.03795 1.00893 1.20117 0.93064 0.96363 1.01004 0.85942 0.91138 0.90880 0.80035 0.81426 0.91134 0.87514 0.88240 0.87112 0.87036 0.89156 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.29 16 2 O -0.33 -9.24 10.50 -92.75 -0.97 -10.21 16 3 C 0.11 3.44 6.69 22.50 0.15 3.59 16 4 C -0.15 -3.96 9.04 22.36 0.20 -3.76 16 5 C -0.09 -2.80 9.82 22.28 0.22 -2.58 16 6 C -0.01 -0.51 6.30 22.33 0.14 -0.37 16 7 Cl -0.04 -1.55 20.60 -2.72 -0.06 -1.60 16 8 C -0.64 -28.76 5.91 22.28 0.13 -28.63 16 9 S 2.53 134.65 4.95 -56.49 -0.28 134.37 16 10 O -0.97 -56.61 12.59 -128.00 -1.61 -58.22 16 11 O -1.05 -60.17 15.75 -128.00 -2.02 -62.19 16 12 N -0.79 -38.31 3.02 -322.96 -0.98 -39.29 16 13 C -0.24 -11.40 4.82 84.03 0.40 -10.99 16 14 H 0.09 4.15 7.82 -2.91 -0.02 4.12 16 15 C 0.03 1.54 3.70 84.86 0.31 1.86 16 16 N -0.81 -45.27 11.40 21.65 0.25 -45.02 16 17 Si 0.95 39.53 28.05 68.60 1.92 41.46 16 18 H -0.25 -10.26 6.19 99.48 0.62 -9.64 16 19 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.25 -9.19 7.11 99.48 0.71 -8.49 16 21 C 0.05 2.28 6.39 44.99 0.29 2.57 16 22 C -0.15 -5.08 9.85 30.62 0.30 -4.77 16 23 C -0.19 -6.10 10.27 30.62 0.31 -5.79 16 24 C -0.09 -3.53 9.49 22.36 0.21 -3.32 16 25 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.07 0.85 7.67 -2.39 -0.02 0.83 16 27 H 0.07 0.85 7.65 -2.39 -0.02 0.83 16 28 H 0.18 2.89 6.30 -2.91 -0.02 2.87 16 29 H 0.17 3.81 8.06 -2.91 -0.02 3.79 16 30 H 0.28 14.88 8.32 -92.71 -0.77 14.11 16 31 H 0.11 4.66 7.37 -2.39 -0.02 4.64 16 32 H 0.10 3.61 7.05 -2.38 -0.02 3.60 16 33 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 34 H 0.11 3.03 8.14 -2.38 -0.02 3.01 16 35 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.13 5.56 7.33 -2.91 -0.02 5.54 16 Total: -1.00 -71.52 319.47 1.07 -70.45 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 1.02 Total: 21.16 kcal Atomic # 6 Polarization: -54.69 SS G_CDS: 3.79 Total: -50.90 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -0.73 Total: -84.31 kcal Atomic # 8 Polarization: -126.02 SS G_CDS: -4.60 Total: -130.62 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 1.92 Total: 41.46 kcal Atomic # 16 Polarization: 134.65 SS G_CDS: -0.28 Total: 134.37 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.06 Total: -1.60 kcal Total: -71.52 1.07 -70.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264864219.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.818 kcal (2) G-P(sol) polarization free energy of solvation -71.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds