Wall clock time and date at job start Tue Mar 31 2020 16:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99662 * 2 1 4 4 H 1.48504 * 109.47318 * 239.99945 * 3 2 1 5 5 H 1.48506 * 109.47396 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47177 * 120.00184 * 3 2 1 7 7 C 1.38803 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00157 * 162.55874 * 7 2 1 9 9 N 1.36932 * 120.00220 * 342.83014 * 7 2 1 10 10 C 1.46960 * 120.59745 * 151.29535 * 9 7 2 11 11 C 1.53812 * 108.40456 * 124.75847 * 10 9 7 12 12 N 1.46968 * 108.57577 * 49.63365 * 11 10 9 13 13 S 1.65606 * 120.59042 * 124.67278 * 12 11 10 14 14 O 1.42105 * 106.40132 * 23.51970 * 13 12 11 15 15 O 1.42100 * 106.39882 * 156.43511 * 13 12 11 16 16 C 1.76193 * 107.21629 * 269.97560 * 13 12 11 17 17 C 1.38228 * 120.41225 * 90.00492 * 16 13 12 18 18 N 1.31853 * 120.79352 * 179.97438 * 17 16 13 19 19 C 1.31872 * 121.74148 * 359.97438 * 18 17 16 20 20 C 1.38308 * 120.74050 * 359.97438 * 19 18 17 21 21 Cl 1.73606 * 120.42830 * 180.02562 * 20 19 18 22 22 C 1.38607 * 120.41337 * 269.72152 * 16 13 12 23 23 C 1.46964 * 118.81555 * 304.65082 * 12 11 10 24 24 C 1.46969 * 120.58959 * 331.56903 * 9 7 2 25 25 H 0.97003 * 120.00245 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.60875 * 244.53869 * 10 9 7 27 27 H 1.08995 * 109.60997 * 5.04494 * 10 9 7 28 28 H 1.08999 * 109.73719 * 289.85273 * 11 10 9 29 29 H 1.08994 * 109.53570 * 169.30221 * 11 10 9 30 30 H 1.08004 * 119.60379 * 359.97283 * 17 16 13 31 31 H 1.08000 * 119.62970 * 180.02562 * 19 18 17 32 32 H 1.08004 * 120.79649 * 0.02562 * 22 16 13 33 33 H 1.09006 * 109.60531 * 295.48539 * 23 12 11 34 34 H 1.08997 * 109.61145 * 174.97568 * 23 12 11 35 35 H 1.08994 * 109.61249 * 354.94911 * 24 9 7 36 36 H 1.08997 * 109.60767 * 115.46065 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7466 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0531 -1.2234 -0.2809 9 7 1.3714 -2.3617 0.3490 10 6 1.8067 -3.6516 -0.2046 11 6 2.1103 -4.6041 0.9643 12 7 0.9733 -4.5803 1.8952 13 16 0.2006 -5.9827 2.3179 14 8 1.1337 -7.0338 2.1081 15 8 -0.4227 -5.7354 3.5707 16 6 -1.0999 -6.2324 1.1557 17 6 -0.8741 -6.9508 -0.0034 18 7 -1.8420 -7.1426 -0.8781 19 6 -3.0552 -6.6626 -0.6866 20 6 -3.3563 -5.9347 0.4503 21 17 -4.9564 -5.3072 0.6944 22 6 -2.3636 -5.7158 1.3951 23 6 0.5345 -3.2897 2.4445 24 6 0.2344 -2.3379 1.2799 25 1 -0.4851 0.8401 0.0004 26 1 1.0135 -4.0700 -0.8243 27 1 2.7054 -3.5077 -0.8043 28 1 3.0127 -4.2770 1.4808 29 1 2.2501 -5.6157 0.5833 30 1 0.1069 -7.3599 -0.1950 31 1 -3.8226 -6.8406 -1.4254 32 1 -2.5702 -5.1540 2.2941 33 1 1.3249 -2.8691 3.0663 34 1 -0.3664 -3.4333 3.0411 35 1 0.0947 -1.3263 1.6610 36 1 -0.6680 -2.6649 0.7635 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269927018.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:30 Heat of formation + Delta-G solvation = -5.394790 kcal Electronic energy + Delta-G solvation = -24706.066919 eV Core-core repulsion = 20958.489133 eV Total energy + Delta-G solvation = -3747.577786 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.44582 -37.71765 -37.30392 -36.90635 -35.85492 -33.92294 -32.95562 -31.51370 -31.18968 -30.28012 -26.51089 -24.50752 -24.04176 -23.32688 -22.98222 -20.23319 -18.97114 -18.28502 -17.70800 -17.18169 -16.90391 -16.22471 -15.57939 -15.33721 -14.88712 -14.63776 -14.16210 -13.85002 -13.74167 -13.62019 -13.53259 -13.20374 -12.96243 -12.34537 -12.30772 -12.15996 -12.08364 -11.69163 -11.53997 -11.49612 -11.20296 -10.88507 -10.81588 -10.60605 -10.47188 -10.31536 -10.05545 -9.92626 -9.79305 -9.39481 -8.89586 -8.55562 -6.77948 -5.90369 -3.34978 0.14974 0.46635 0.70698 1.69640 2.89808 3.23414 3.32269 3.38776 3.39743 3.73858 4.01122 4.20758 4.34429 4.40156 4.52172 4.73508 4.93828 4.99721 5.25689 5.38587 5.41401 5.48622 5.64929 5.80860 5.94176 6.00270 6.15463 6.24939 6.32344 6.49803 6.70559 6.78766 7.14525 7.35469 7.44882 7.68480 8.31222 9.07333 9.69995 10.26556 11.17356 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.012756 B = 0.004668 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.527451 B = 5996.894882 C = 7114.839576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.005 3.995 3 Si 0.905 3.095 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.257 4.257 8 H 0.068 0.932 9 N -0.587 5.587 10 C 0.130 3.870 11 C 0.102 3.898 12 N -0.981 5.981 13 S 2.694 3.306 14 O -0.955 6.955 15 O -0.955 6.955 16 C -0.719 4.719 17 C 0.204 3.796 18 N -0.480 5.480 19 C 0.163 3.837 20 C -0.110 4.110 21 Cl -0.044 7.044 22 C 0.039 3.961 23 C 0.093 3.907 24 C 0.157 3.843 25 H 0.256 0.744 26 H 0.021 0.979 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.179 0.821 31 H 0.172 0.828 32 H 0.162 0.838 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.226 -12.333 1.989 13.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.386 4.386 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.002 3.998 11 C -0.025 4.025 12 N -0.821 5.821 13 S 2.780 3.220 14 O -0.946 6.946 15 O -0.945 6.945 16 C -0.804 4.804 17 C 0.045 3.955 18 N -0.189 5.189 19 C 0.006 3.994 20 C -0.140 4.140 21 Cl -0.015 7.015 22 C 0.012 3.988 23 C -0.033 4.033 24 C 0.030 3.970 25 H 0.066 0.934 26 H 0.039 0.961 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.196 0.804 31 H 0.189 0.811 32 H 0.179 0.821 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.119 0.881 36 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -5.134 -13.138 1.905 14.233 hybrid contribution -0.525 1.670 0.032 1.751 sum -5.659 -11.468 1.937 12.934 Atomic orbital electron populations 1.69997 1.05312 1.25885 1.53420 1.25065 0.95289 0.98556 1.00527 0.86342 0.78911 0.83114 0.78203 1.20854 1.21634 1.20909 1.19156 0.92756 0.84614 1.42101 0.91466 1.43894 1.36455 1.01583 1.49027 1.21385 0.98400 0.87517 0.92485 1.22214 0.87825 1.00526 0.91887 1.57418 1.42982 1.21848 1.59864 1.02127 0.73083 0.73081 0.73687 1.93567 1.60309 1.54364 1.86318 1.93570 1.77495 1.85188 1.38206 1.32408 1.16253 1.13219 1.18533 1.22687 0.98672 0.88039 0.86060 1.67977 1.00234 1.20511 1.30136 1.23142 0.94246 0.88643 0.93375 1.22084 0.89153 1.03799 0.98966 1.98401 1.20818 1.85617 1.96651 1.21269 0.89576 0.90659 0.97278 1.22431 0.99604 0.82977 0.98255 1.21187 0.89058 0.98751 0.88046 0.93409 0.96126 0.91335 0.90652 0.90215 0.80419 0.81056 0.82083 0.90902 0.90449 0.88085 0.96138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.74 11.20 55.49 0.62 -24.12 16 2 C 0.00 0.12 4.91 -17.43 -0.09 0.03 16 3 Si 0.90 20.69 29.59 -169.99 -5.03 15.66 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.26 -6.57 9.57 -15.06 -0.14 -6.71 16 8 H 0.07 1.68 7.89 -52.48 -0.41 1.27 16 9 N -0.59 -13.48 2.96 -171.77 -0.51 -13.98 16 10 C 0.13 2.44 6.70 -3.37 -0.02 2.42 16 11 C 0.10 1.59 6.56 -3.36 -0.02 1.57 16 12 N -0.98 -15.62 3.26 -113.00 -0.37 -15.99 16 13 S 2.69 39.86 5.71 -107.50 -0.61 39.24 16 14 O -0.96 -15.05 16.00 -57.17 -0.91 -15.97 16 15 O -0.95 -15.71 16.05 -57.17 -0.92 -16.63 16 16 C -0.72 -9.84 5.99 -39.45 -0.24 -10.08 16 17 C 0.20 2.67 10.69 -17.55 -0.19 2.48 16 18 N -0.48 -6.31 10.36 -13.22 -0.14 -6.45 16 19 C 0.16 1.91 10.99 -17.51 -0.19 1.72 16 20 C -0.11 -1.35 6.34 -39.36 -0.25 -1.60 16 21 Cl -0.04 -0.48 28.99 -51.86 -1.50 -1.98 16 22 C 0.04 0.52 9.45 -39.25 -0.37 0.15 16 23 C 0.09 1.62 6.55 -3.60 -0.02 1.60 16 24 C 0.16 3.39 5.51 -3.60 -0.02 3.37 16 25 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.08 1.04 7.09 -51.93 -0.37 0.67 16 30 H 0.18 1.96 7.63 -52.48 -0.40 1.56 16 31 H 0.17 1.47 8.06 -52.49 -0.42 1.04 16 32 H 0.16 1.95 7.70 -52.48 -0.40 1.54 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.08 1.20 7.09 -51.93 -0.37 0.83 16 35 H 0.10 2.45 6.00 -51.93 -0.31 2.14 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 328.97 15.07 4.96 4.96 Total: -1.00 -30.82 328.97 -9.90 -40.71 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -3.93 Total: -0.40 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -1.55 Total: -5.05 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: -0.39 Total: -60.54 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -1.83 Total: -32.60 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Atomic # 16 Polarization: 39.86 SS G_CDS: -0.61 Total: 39.24 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.50 Total: -1.98 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.82 -9.90 -40.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269927018.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.319 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds