Wall clock time and date at job start Tue Mar 31 2020 15:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42101 * 110.54272 * 2 1 4 4 O 1.42102 * 110.54259 * 136.75157 * 2 1 3 5 5 C 1.76199 * 104.45230 * 248.37068 * 2 1 3 6 6 C 1.37920 * 119.93446 * 114.72257 * 5 2 1 7 7 C 1.39590 * 119.87008 * 179.75413 * 6 5 2 8 8 C 1.47783 * 120.13604 * 180.27340 * 7 6 5 9 9 O 1.21559 * 119.99634 * 0.27244 * 8 7 6 10 10 N 1.34775 * 120.00298 * 180.27528 * 8 7 6 11 11 C 1.46499 * 120.00078 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47206 * 179.97438 * 11 10 8 13 13 C 1.50703 * 109.46886 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00346 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99825 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99792 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00017 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47391 * 60.00128 * 17 15 13 19 19 H 1.48501 * 109.47031 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47194 * 300.00071 * 17 15 13 21 21 C 1.39635 * 119.73638 * 0.54480 * 7 6 5 22 22 C 1.37874 * 119.86756 * 359.70953 * 21 7 6 23 23 C 1.38486 * 119.93916 * 295.00706 * 5 2 1 24 24 Cl 1.73606 * 119.86315 * 359.97438 * 23 5 2 25 25 H 1.09001 * 109.46838 * 51.62881 * 1 2 3 26 26 H 1.08998 * 109.46934 * 171.62681 * 1 2 3 27 27 H 1.08992 * 109.47290 * 291.62405 * 1 2 3 28 28 H 1.08004 * 120.06378 * 0.02562 * 6 5 2 29 29 H 0.97002 * 119.99853 * 0.02562 * 10 8 7 30 30 H 1.09004 * 109.47382 * 300.00616 * 11 10 8 31 31 H 1.09009 * 109.47046 * 60.00189 * 11 10 8 32 32 H 1.08998 * 109.46842 * 300.00388 * 12 11 10 33 33 H 1.08997 * 109.46953 * 60.00609 * 12 11 10 34 34 H 0.96999 * 119.99948 * 180.02562 * 16 15 13 35 35 H 1.08003 * 120.06621 * 179.68258 * 21 7 6 36 36 H 1.08001 * 119.93493 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 0.9117 5 6 2.2537 -0.6289 -1.5861 6 6 2.9096 0.1806 -2.4898 7 6 3.2619 -0.3206 -3.7441 8 6 3.9701 0.5398 -4.7147 9 8 4.2513 1.6850 -4.4196 10 7 4.3040 0.0549 -5.9271 11 6 5.0056 0.9081 -6.8894 12 6 5.2643 0.1205 -8.1754 13 6 5.9865 0.9980 -9.1651 14 1 6.2356 2.0157 -8.9033 15 6 6.3283 0.5019 -10.4053 16 7 6.0235 -0.7370 -10.7247 17 14 7.2228 1.5897 -11.6324 18 1 8.5174 2.0291 -11.0526 19 1 7.4740 0.8253 -12.8805 20 1 6.3887 2.7793 -11.9393 21 6 2.9375 -1.6365 -4.0802 22 6 2.2771 -2.4346 -3.1704 23 6 1.9350 -1.9333 -1.9251 24 17 1.1034 -2.9442 -0.7847 25 1 -0.3633 0.6379 -0.8057 26 1 -0.3633 -1.0167 -0.1496 27 1 -0.3633 0.3787 0.9553 28 1 3.1539 1.1990 -2.2259 29 1 4.0792 -0.8588 -6.1626 30 1 4.3934 1.7814 -7.1146 31 1 5.9559 1.2305 -6.4639 32 1 5.8766 -0.7525 -7.9498 33 1 4.3142 -0.2022 -8.6011 34 1 6.2643 -1.0861 -11.5971 35 1 3.2029 -2.0281 -5.0511 36 1 2.0252 -3.4524 -3.4294 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272968220.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:50 Heat of formation + Delta-G solvation = -86.054774 kcal Electronic energy + Delta-G solvation = -22821.150655 eV Core-core repulsion = 19037.782439 eV Total energy + Delta-G solvation = -3783.368216 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.40921 -38.68779 -37.53716 -37.01601 -36.28593 -35.10746 -33.08668 -32.00565 -31.55279 -30.01084 -29.49156 -25.37851 -24.12285 -23.50961 -21.26332 -20.81960 -19.36699 -18.55784 -17.07819 -16.84830 -16.52708 -16.48421 -16.39728 -15.63571 -15.18371 -14.90429 -14.59375 -14.51261 -14.34265 -13.75550 -13.67030 -13.56172 -13.18759 -13.14321 -12.42929 -12.36656 -12.35214 -12.27207 -11.97380 -11.91981 -11.37575 -11.30411 -11.08269 -11.07056 -10.72350 -10.43621 -10.05175 -9.99168 -9.62311 -9.36270 -9.34413 -8.68888 -8.45613 -6.15938 -4.19114 -0.40568 0.03377 0.51206 1.27456 2.32945 2.45097 3.25516 3.27488 3.31610 3.34582 3.38151 3.51114 3.75852 4.13459 4.32692 4.35216 4.44371 4.46750 4.60378 4.78425 4.87663 5.19198 5.21460 5.24055 5.32401 5.50461 5.68440 6.03784 6.22271 6.22812 6.60197 6.69601 7.40662 7.50879 7.75432 7.81877 8.17962 8.37499 8.86338 9.46216 10.95624 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.027594 B = 0.002335 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.467372 B =11989.497177 C =12785.200102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.495 3.505 3 O -0.928 6.928 4 O -0.920 6.920 5 C -0.664 4.664 6 C 0.044 3.956 7 C -0.137 4.137 8 C 0.546 3.454 9 O -0.535 6.535 10 N -0.713 5.713 11 C 0.120 3.880 12 C 0.013 3.987 13 C -0.524 4.524 14 H 0.060 0.940 15 C 0.060 3.940 16 N -0.894 5.894 17 Si 0.898 3.102 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.023 4.023 22 C -0.130 4.130 23 C 0.060 3.940 24 Cl -0.043 7.043 25 H 0.136 0.864 26 H 0.132 0.868 27 H 0.137 0.863 28 H 0.169 0.831 29 H 0.397 0.603 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.263 0.737 35 H 0.150 0.850 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.846 -5.788 20.585 26.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.802 4.802 2 S 2.672 3.328 3 O -0.925 6.925 4 O -0.917 6.917 5 C -0.749 4.749 6 C 0.025 3.975 7 C -0.141 4.141 8 C 0.331 3.669 9 O -0.413 6.413 10 N -0.363 5.363 11 C -0.002 4.002 12 C -0.025 4.025 13 C -0.563 4.563 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.533 5.533 17 Si 0.726 3.274 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.042 4.042 22 C -0.149 4.149 23 C 0.032 3.968 24 Cl -0.013 7.013 25 H 0.155 0.845 26 H 0.150 0.850 27 H 0.156 0.844 28 H 0.186 0.814 29 H 0.231 0.769 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.167 0.833 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -14.108 -4.935 21.323 26.040 hybrid contribution -0.169 -0.512 -1.620 1.708 sum -14.277 -5.447 19.703 24.934 Atomic orbital electron populations 1.30285 1.25016 1.12470 1.12415 1.05535 0.78339 0.74937 0.74006 1.93619 1.77450 1.36002 1.85443 1.93641 1.77118 1.61268 1.59660 1.30534 1.16982 1.02110 1.25283 1.21137 0.87066 0.99786 0.89542 1.20435 1.02571 0.95047 0.96068 1.18045 0.79775 0.86859 0.82173 1.90799 1.54803 1.18029 1.77711 1.46291 1.58366 1.17083 1.14518 1.21844 0.95303 0.93730 0.89304 1.19331 0.97563 0.95838 0.89739 1.20993 1.37719 0.98738 0.98800 0.92207 1.24992 0.95799 0.95143 0.98288 1.69934 1.46844 1.14606 1.21916 0.86551 0.80259 0.80399 0.80215 1.20061 1.21221 1.20069 1.21740 0.91222 0.92045 0.99240 1.21137 1.00445 1.01528 0.91765 1.20678 0.94492 0.90089 0.91519 1.98439 1.75661 1.68228 1.59021 0.84520 0.84952 0.84440 0.81359 0.76855 0.92080 0.92074 0.95875 0.95891 0.92720 0.83276 0.83090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.99 10.60 101.05 1.07 -1.92 16 2 S 2.49 22.63 5.23 -107.50 -0.56 22.07 16 3 O -0.93 -11.32 16.73 -57.54 -0.96 -12.28 16 4 O -0.92 -10.58 16.45 -57.54 -0.95 -11.53 16 5 C -0.66 -6.76 5.58 -39.61 -0.22 -6.98 16 6 C 0.04 0.54 9.04 -39.19 -0.35 0.19 16 7 C -0.14 -1.73 5.87 -104.97 -0.62 -2.34 16 8 C 0.55 8.90 7.77 -12.36 -0.10 8.80 16 9 O -0.54 -10.66 16.35 5.31 0.09 -10.57 16 10 N -0.71 -11.55 5.51 -61.27 -0.34 -11.88 16 11 C 0.12 2.42 5.61 -4.04 -0.02 2.39 16 12 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 13 C -0.52 -14.10 9.11 -34.44 -0.31 -14.42 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -25.45 13.29 55.43 0.74 -24.71 16 17 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 C -0.02 -0.22 9.54 -39.19 -0.37 -0.60 16 22 C -0.13 -1.07 9.81 -39.61 -0.39 -1.46 16 23 C 0.06 0.55 6.29 -39.38 -0.25 0.30 16 24 Cl -0.04 -0.35 24.79 -51.86 -1.29 -1.63 16 25 H 0.14 0.42 8.14 -51.92 -0.42 0.00 16 26 H 0.13 0.52 6.29 -51.92 -0.33 0.19 16 27 H 0.14 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.17 2.17 6.80 -52.48 -0.36 1.81 16 29 H 0.40 5.28 6.50 -40.82 -0.27 5.01 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.06 1.29 8.14 -51.92 -0.42 0.86 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 35 H 0.15 1.09 6.40 -52.48 -0.34 0.76 16 36 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 LS Contribution 337.92 15.07 5.09 5.09 Total: -1.00 -35.09 337.92 -8.79 -43.88 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -3.79 Total: -0.04 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -1.80 Total: -14.33 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.40 Total: -36.60 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -1.82 Total: -34.38 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 22.63 SS G_CDS: -0.56 Total: 22.07 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.29 Total: -1.63 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.09 -8.79 -43.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272968220.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.175 kcal (2) G-P(sol) polarization free energy of solvation -35.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds