Wall clock time and date at job start Tue Mar 31 2020 15:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42101 * 110.54272 * 2 1 4 4 O 1.42102 * 110.54259 * 136.75157 * 2 1 3 5 5 C 1.76199 * 104.45230 * 248.37068 * 2 1 3 6 6 C 1.37920 * 119.93446 * 114.72257 * 5 2 1 7 7 C 1.39590 * 119.87008 * 179.75413 * 6 5 2 8 8 C 1.47783 * 120.13604 * 180.27340 * 7 6 5 9 9 O 1.21559 * 119.99634 * 0.27244 * 8 7 6 10 10 N 1.34775 * 120.00298 * 180.27528 * 8 7 6 11 11 C 1.46499 * 120.00078 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47206 * 179.97438 * 11 10 8 13 13 C 1.50703 * 109.46886 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00346 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99825 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99792 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00017 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47391 * 60.00128 * 17 15 13 19 19 H 1.48501 * 109.47031 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47194 * 300.00071 * 17 15 13 21 21 C 1.39635 * 119.73638 * 0.54480 * 7 6 5 22 22 C 1.37874 * 119.86756 * 359.70953 * 21 7 6 23 23 C 1.38486 * 119.93916 * 295.00706 * 5 2 1 24 24 Cl 1.73606 * 119.86315 * 359.97438 * 23 5 2 25 25 H 1.09001 * 109.46838 * 51.62881 * 1 2 3 26 26 H 1.08998 * 109.46934 * 171.62681 * 1 2 3 27 27 H 1.08992 * 109.47290 * 291.62405 * 1 2 3 28 28 H 1.08004 * 120.06378 * 0.02562 * 6 5 2 29 29 H 0.97002 * 119.99853 * 0.02562 * 10 8 7 30 30 H 1.09004 * 109.47382 * 300.00616 * 11 10 8 31 31 H 1.09009 * 109.47046 * 60.00189 * 11 10 8 32 32 H 1.08998 * 109.46842 * 300.00388 * 12 11 10 33 33 H 1.08997 * 109.46953 * 60.00609 * 12 11 10 34 34 H 0.96999 * 119.99948 * 180.02562 * 16 15 13 35 35 H 1.08003 * 120.06621 * 179.68258 * 21 7 6 36 36 H 1.08001 * 119.93493 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 0.9117 5 6 2.2537 -0.6289 -1.5861 6 6 2.9096 0.1806 -2.4898 7 6 3.2619 -0.3206 -3.7441 8 6 3.9701 0.5398 -4.7147 9 8 4.2513 1.6850 -4.4196 10 7 4.3040 0.0549 -5.9271 11 6 5.0056 0.9081 -6.8894 12 6 5.2643 0.1205 -8.1754 13 6 5.9865 0.9980 -9.1651 14 1 6.2356 2.0157 -8.9033 15 6 6.3283 0.5019 -10.4053 16 7 6.0235 -0.7370 -10.7247 17 14 7.2228 1.5897 -11.6324 18 1 8.5174 2.0291 -11.0526 19 1 7.4740 0.8253 -12.8805 20 1 6.3887 2.7793 -11.9393 21 6 2.9375 -1.6365 -4.0802 22 6 2.2771 -2.4346 -3.1704 23 6 1.9350 -1.9333 -1.9251 24 17 1.1034 -2.9442 -0.7847 25 1 -0.3633 0.6379 -0.8057 26 1 -0.3633 -1.0167 -0.1496 27 1 -0.3633 0.3787 0.9553 28 1 3.1539 1.1990 -2.2259 29 1 4.0792 -0.8588 -6.1626 30 1 4.3934 1.7814 -7.1146 31 1 5.9559 1.2305 -6.4639 32 1 5.8766 -0.7525 -7.9498 33 1 4.3142 -0.2022 -8.6011 34 1 6.2643 -1.0861 -11.5971 35 1 3.2029 -2.0281 -5.0511 36 1 2.0252 -3.4524 -3.4294 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272968220.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:50 Heat of formation + Delta-G solvation = -112.142266 kcal Electronic energy + Delta-G solvation = -22822.281894 eV Core-core repulsion = 19037.782439 eV Total energy + Delta-G solvation = -3784.499455 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.47740 -39.77038 -38.33497 -37.76437 -37.08025 -36.72546 -34.93525 -33.03551 -32.45726 -31.22334 -30.38590 -27.06806 -25.15024 -24.54147 -22.90834 -22.03116 -20.32679 -19.42234 -18.57826 -17.86808 -17.65453 -17.41620 -17.22365 -16.74111 -16.59998 -16.47295 -15.93678 -15.34265 -15.22129 -15.00300 -14.76019 -14.30136 -14.14077 -14.06914 -13.89528 -13.29434 -13.23803 -13.17934 -13.12308 -12.95899 -12.72053 -12.66057 -12.55540 -12.25688 -12.01887 -11.81287 -11.72752 -11.49665 -11.09878 -10.75815 -10.60747 -10.30207 -10.01901 -8.24750 -6.34571 -1.06081 -0.79320 -0.32203 0.55016 1.40049 1.42467 1.43969 1.51879 1.69578 2.02672 2.33862 2.42273 2.76352 3.06318 3.10556 3.43948 3.48445 3.71084 3.86820 4.00827 4.02706 4.18492 4.39456 4.46738 4.48924 4.56844 4.71112 4.83481 4.86360 4.87211 5.16040 5.27455 5.45525 5.57196 5.77140 6.14979 6.45006 6.77962 7.06829 7.34672 8.86738 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.027594 B = 0.002335 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.467372 B =11989.497177 C =12785.200102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.625 4.625 2 S 2.487 3.513 3 O -0.970 6.970 4 O -0.951 6.951 5 C -0.665 4.665 6 C 0.030 3.970 7 C -0.156 4.156 8 C 0.548 3.452 9 O -0.579 6.579 10 N -0.706 5.706 11 C 0.138 3.862 12 C 0.023 3.977 13 C -0.549 4.549 14 H 0.058 0.942 15 C 0.010 3.990 16 N -0.925 5.925 17 Si 0.962 3.038 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.269 1.269 21 C -0.014 4.014 22 C -0.119 4.119 23 C 0.062 3.938 24 Cl -0.026 7.026 25 H 0.158 0.842 26 H 0.146 0.854 27 H 0.167 0.833 28 H 0.150 0.850 29 H 0.412 0.588 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.011 0.989 33 H 0.013 0.987 34 H 0.266 0.734 35 H 0.173 0.827 36 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.597 -7.156 20.885 27.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.779 4.779 2 S 2.668 3.332 3 O -0.967 6.967 4 O -0.948 6.948 5 C -0.749 4.749 6 C 0.010 3.990 7 C -0.160 4.160 8 C 0.336 3.664 9 O -0.461 6.461 10 N -0.356 5.356 11 C 0.015 3.985 12 C -0.014 4.014 13 C -0.587 4.587 14 H 0.076 0.924 15 C -0.189 4.189 16 N -0.564 5.564 17 Si 0.787 3.213 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.194 1.194 21 C -0.033 4.033 22 C -0.138 4.138 23 C 0.033 3.967 24 Cl 0.003 6.997 25 H 0.177 0.823 26 H 0.165 0.835 27 H 0.185 0.815 28 H 0.168 0.832 29 H 0.250 0.750 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.030 0.970 33 H 0.032 0.968 34 H 0.075 0.925 35 H 0.190 0.810 36 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -15.829 -6.335 21.627 27.539 hybrid contribution 0.248 -0.165 -1.611 1.639 sum -15.580 -6.499 20.016 26.185 Atomic orbital electron populations 1.30111 1.18447 1.14211 1.15122 1.05608 0.80813 0.73581 0.73169 1.93570 1.79880 1.37577 1.85721 1.93599 1.79426 1.61551 1.60201 1.30569 1.16697 1.02550 1.25072 1.21000 0.88258 0.99580 0.90138 1.20108 1.04357 0.96058 0.95443 1.18548 0.78959 0.86678 0.82204 1.90769 1.56611 1.20172 1.78509 1.46020 1.58105 1.17433 1.14090 1.21336 0.95056 0.93419 0.88686 1.19137 0.96373 0.95262 0.90654 1.21435 1.38145 0.99223 0.99901 0.92367 1.25816 0.96535 0.96456 1.00134 1.70029 1.47808 1.16040 1.22526 0.85543 0.79144 0.78750 0.77898 1.19517 1.20599 1.19383 1.21963 0.90368 0.90536 1.00447 1.21523 0.98813 1.02710 0.90736 1.20870 0.93867 0.89770 0.92155 1.98449 1.75142 1.67528 1.58550 0.82334 0.83530 0.81536 0.83237 0.75011 0.93007 0.93264 0.97022 0.96845 0.92506 0.81021 0.79571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -3.71 10.60 113.37 1.20 -2.51 16 2 S 2.49 43.64 5.23 -56.49 -0.30 43.34 16 3 O -0.97 -24.60 16.73 -127.65 -2.14 -26.73 16 4 O -0.95 -21.40 16.45 -127.65 -2.10 -23.50 16 5 C -0.66 -13.03 5.58 22.25 0.12 -12.91 16 6 C 0.03 0.75 9.04 22.52 0.20 0.95 16 7 C -0.16 -3.90 5.87 -20.09 -0.12 -4.02 16 8 C 0.55 18.29 7.77 86.77 0.67 18.96 16 9 O -0.58 -24.20 16.35 -3.90 -0.06 -24.26 16 10 N -0.71 -23.01 5.51 -466.02 -2.57 -25.57 16 11 C 0.14 5.70 5.61 86.38 0.48 6.19 16 12 C 0.02 1.12 5.09 29.85 0.15 1.27 16 13 C -0.55 -29.84 9.11 25.60 0.23 -29.61 16 14 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 15 C 0.01 0.53 5.46 84.66 0.46 0.99 16 16 N -0.92 -52.71 13.29 21.45 0.28 -52.43 16 17 Si 0.96 42.79 29.54 68.60 2.03 44.82 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 19 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 C -0.01 -0.24 9.54 22.52 0.21 -0.03 16 22 C -0.12 -1.59 9.81 22.25 0.22 -1.37 16 23 C 0.06 0.99 6.29 22.40 0.14 1.13 16 24 Cl -0.03 -0.35 24.79 -2.72 -0.07 -0.41 16 25 H 0.16 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.15 0.57 6.29 -2.39 -0.02 0.55 16 27 H 0.17 0.17 8.14 -2.39 -0.02 0.15 16 28 H 0.15 4.23 6.80 -2.91 -0.02 4.21 16 29 H 0.41 10.66 6.50 -92.71 -0.60 10.06 16 30 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 35 H 0.17 2.04 6.40 -2.91 -0.02 2.02 16 36 H 0.19 1.19 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -77.97 337.92 -0.39 -78.36 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 0.53 Total: 7.34 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 3.99 Total: -20.96 kcal Atomic # 7 Polarization: -75.72 SS G_CDS: -2.28 Total: -78.00 kcal Atomic # 8 Polarization: -70.20 SS G_CDS: -4.30 Total: -74.49 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 43.64 SS G_CDS: -0.30 Total: 43.34 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -0.07 Total: -0.41 kcal Total: -77.97 -0.39 -78.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272968220.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.782 kcal (2) G-P(sol) polarization free energy of solvation -77.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds