Wall clock time and date at job start Tue Mar 31 2020 15:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42100 * 110.54554 * 2 1 4 4 O 1.42108 * 110.54027 * 223.25180 * 2 1 3 5 5 C 1.76199 * 104.45330 * 111.62815 * 2 1 3 6 6 C 1.38417 * 119.91080 * 89.99539 * 5 2 1 7 7 C 1.38265 * 120.31861 * 180.02562 * 6 5 2 8 8 C 1.38159 * 120.13163 * 359.97438 * 7 6 5 9 9 Cl 1.73597 * 120.09608 * 179.97438 * 8 7 6 10 10 C 1.39693 * 119.81215 * 359.97438 * 8 7 6 11 11 C 1.47766 * 120.15638 * 180.02562 * 10 8 7 12 12 O 1.21565 * 119.99693 * 359.97438 * 11 10 8 13 13 N 1.34777 * 120.00147 * 180.02562 * 11 10 8 14 14 C 1.46506 * 119.99873 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47035 * 179.97438 * 14 13 11 16 16 C 1.50696 * 109.47300 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99822 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00339 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99769 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00300 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46691 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47025 * 120.00050 * 20 18 16 23 23 H 1.48500 * 109.46740 * 240.00408 * 20 18 16 24 24 C 1.37905 * 119.90751 * 270.23475 * 5 2 1 25 25 H 1.09003 * 109.47015 * 308.36896 * 1 2 3 26 26 H 1.08997 * 109.47522 * 68.37132 * 1 2 3 27 27 H 1.09001 * 109.46960 * 188.37826 * 1 2 3 28 28 H 1.08003 * 119.84194 * 359.97438 * 6 5 2 29 29 H 1.07999 * 119.93712 * 179.97438 * 7 6 5 30 30 H 0.96999 * 120.00047 * 359.97438 * 13 11 10 31 31 H 1.09004 * 109.47073 * 299.99562 * 14 13 11 32 32 H 1.09000 * 109.47212 * 59.99645 * 14 13 11 33 33 H 1.09004 * 109.46930 * 299.99770 * 15 14 13 34 34 H 1.09004 * 109.47059 * 59.99372 * 15 14 13 35 35 H 0.97000 * 120.00540 * 179.97438 * 19 18 16 36 36 H 1.07992 * 120.06404 * 0.03875 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9118 5 6 2.2537 -0.6289 1.5861 6 6 2.4259 -1.9906 1.7652 7 6 2.7705 -2.4932 3.0063 8 6 2.9458 -1.6376 4.0768 9 17 3.3778 -2.2698 5.6348 10 6 2.7745 -0.2623 3.9020 11 6 2.9606 0.6597 5.0415 12 8 3.2631 0.2218 6.1345 13 7 2.7940 1.9860 4.8695 14 6 2.9780 2.9001 5.9995 15 6 2.7322 4.3379 5.5377 16 6 2.9209 5.2781 6.7001 17 1 3.1889 4.8891 7.6713 18 6 2.7514 6.6350 6.5239 19 7 2.4246 7.1088 5.3414 20 14 2.9859 7.8006 7.9647 21 1 3.3477 7.0226 9.1768 22 1 4.0724 8.7630 7.6510 23 1 1.7234 8.5424 8.2118 24 6 2.4206 0.2365 2.6468 25 1 -0.3633 0.6379 0.8057 26 1 -0.3634 0.3788 -0.9553 27 1 -0.3633 -1.0167 0.1497 28 1 2.2896 -2.6637 0.9317 29 1 2.9029 -3.5568 3.1392 30 1 2.5523 2.3354 3.9975 31 1 2.2723 2.6466 6.7906 32 1 3.9962 2.8095 6.3781 33 1 3.4383 4.5912 4.7468 34 1 1.7142 4.4288 5.1587 35 1 2.3049 8.0633 5.2174 36 1 2.2814 1.2981 2.5060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273050472.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:16 Heat of formation + Delta-G solvation = -81.198104 kcal Electronic energy + Delta-G solvation = -23078.498177 eV Core-core repulsion = 19295.340562 eV Total energy + Delta-G solvation = -3783.157615 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 3.31 seconds Orbital eigenvalues (eV) -40.33910 -38.46785 -37.44867 -36.70302 -36.26967 -34.98086 -33.01068 -31.88264 -31.53395 -29.88617 -29.47615 -25.34584 -23.96264 -23.52149 -21.30087 -20.63504 -19.25745 -18.51172 -16.95925 -16.85179 -16.52202 -16.36420 -16.21755 -15.61199 -15.17359 -14.81824 -14.71293 -14.45668 -13.94208 -13.74764 -13.60557 -13.41211 -13.05003 -12.88688 -12.47966 -12.41708 -12.32341 -12.19586 -11.97662 -11.53478 -11.37897 -11.21966 -11.07017 -11.06223 -10.63588 -10.38549 -9.75818 -9.59222 -9.47241 -9.46184 -9.20370 -8.60981 -8.39829 -6.10508 -4.13615 -0.36791 0.14693 0.50361 1.80452 2.39634 2.54116 3.27820 3.33405 3.36729 3.39521 3.42745 3.58219 3.72037 4.16270 4.32295 4.37383 4.41505 4.46854 4.79118 4.83419 4.95337 5.24132 5.24379 5.26688 5.27133 5.44405 5.60669 6.07050 6.27782 6.29392 6.67178 6.77719 7.48319 7.58376 7.83213 7.87843 8.24052 8.45636 8.92331 9.51455 11.01058 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.011643 B = 0.003326 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.394864 B = 8417.745302 C =10597.584127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.649 4.649 2 S 2.502 3.498 3 O -0.926 6.926 4 O -0.936 6.936 5 C -0.670 4.670 6 C 0.005 3.995 7 C -0.142 4.142 8 C 0.060 3.940 9 Cl -0.015 7.015 10 C -0.140 4.140 11 C 0.542 3.458 12 O -0.521 6.521 13 N -0.714 5.714 14 C 0.122 3.878 15 C 0.010 3.990 16 C -0.522 4.522 17 H 0.060 0.940 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.896 3.104 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.019 3.981 25 H 0.136 0.864 26 H 0.134 0.866 27 H 0.132 0.868 28 H 0.154 0.846 29 H 0.149 0.851 30 H 0.397 0.603 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.024 0.976 34 H 0.023 0.977 35 H 0.262 0.738 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.217 -20.602 -12.101 24.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.680 3.320 3 O -0.924 6.924 4 O -0.933 6.933 5 C -0.755 4.755 6 C -0.014 4.014 7 C -0.161 4.161 8 C 0.031 3.969 9 Cl 0.015 6.985 10 C -0.145 4.145 11 C 0.327 3.673 12 O -0.398 6.398 13 N -0.365 5.365 14 C 0.001 3.999 15 C -0.027 4.027 16 C -0.560 4.560 17 H 0.078 0.922 18 C -0.142 4.142 19 N -0.531 5.531 20 Si 0.724 3.276 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.001 4.001 25 H 0.154 0.846 26 H 0.153 0.847 27 H 0.151 0.849 28 H 0.172 0.828 29 H 0.167 0.833 30 H 0.231 0.769 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.421 -20.520 -11.842 24.100 hybrid contribution -0.438 0.569 1.127 1.336 sum -4.858 -19.951 -10.715 23.161 Atomic orbital electron populations 1.30226 1.25180 1.12216 1.12344 1.05281 0.78061 0.74786 0.73880 1.93647 1.77209 1.35942 1.85559 1.93591 1.77497 1.61825 1.60380 1.30695 1.19457 1.02893 1.22463 1.21052 0.90033 0.93176 0.97133 1.21208 1.02859 1.00563 0.91473 1.21425 0.93864 0.92564 0.89014 1.98452 1.89760 1.85776 1.24485 1.20151 1.05777 0.93130 0.95417 1.17960 0.79036 0.82779 0.87544 1.90856 1.46989 1.76591 1.25379 1.46317 1.69247 1.05860 1.15041 1.21808 1.00840 0.90359 0.86919 1.19357 0.97774 0.87847 0.97717 1.21060 1.47852 0.91358 0.95778 0.92173 1.24992 0.94955 0.98386 0.95911 1.69961 1.47567 1.13562 1.22047 0.86460 0.77784 0.80791 0.82551 1.19598 1.20909 1.20944 1.21170 0.88946 1.00158 0.89785 0.84552 0.84722 0.84923 0.82797 0.83327 0.76850 0.92177 0.92172 0.95723 0.95845 0.92852 0.82694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.28 10.80 101.05 1.09 -1.18 16 2 S 2.50 18.77 5.79 -107.50 -0.62 18.15 16 3 O -0.93 -10.73 17.12 -57.54 -0.99 -11.72 16 4 O -0.94 -9.29 17.12 -57.54 -0.98 -10.28 16 5 C -0.67 -5.87 5.65 -39.64 -0.22 -6.10 16 6 C 0.01 0.04 9.46 -39.51 -0.37 -0.33 16 7 C -0.14 -1.24 9.82 -39.60 -0.39 -1.63 16 8 C 0.06 0.73 6.35 -39.07 -0.25 0.48 16 9 Cl -0.01 -0.20 26.02 -51.86 -1.35 -1.54 16 10 C -0.14 -1.88 5.88 -104.94 -0.62 -2.49 16 11 C 0.54 9.16 7.77 -12.37 -0.10 9.07 16 12 O -0.52 -10.23 13.97 5.31 0.07 -10.15 16 13 N -0.71 -12.28 5.51 -61.27 -0.34 -12.62 16 14 C 0.12 2.54 5.61 -4.04 -0.02 2.52 16 15 C 0.01 0.26 5.09 -27.88 -0.14 0.11 16 16 C -0.52 -14.30 9.11 -34.44 -0.31 -14.62 16 17 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 20 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.02 0.21 8.96 -39.19 -0.35 -0.14 16 25 H 0.14 0.38 8.14 -51.92 -0.42 -0.04 16 26 H 0.13 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.13 0.21 8.14 -51.92 -0.42 -0.21 16 28 H 0.15 0.75 7.56 -52.48 -0.40 0.35 16 29 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 30 H 0.40 5.89 6.51 -40.82 -0.27 5.63 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.16 1.53 5.92 -52.49 -0.31 1.22 16 LS Contribution 340.71 15.07 5.13 5.13 Total: -1.00 -36.66 340.71 -9.04 -45.70 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -3.90 Total: -0.98 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -1.78 Total: -12.76 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.40 Total: -37.77 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -1.90 Total: -32.15 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 18.77 SS G_CDS: -0.62 Total: 18.15 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.35 Total: -1.54 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -36.66 -9.04 -45.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273050472.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.501 kcal (2) G-P(sol) polarization free energy of solvation -36.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.31 seconds