Wall clock time and date at job start Tue Mar 31 2020 15:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42100 * 110.54554 * 2 1 4 4 O 1.42108 * 110.54027 * 223.25180 * 2 1 3 5 5 C 1.76199 * 104.45330 * 111.62815 * 2 1 3 6 6 C 1.38417 * 119.91080 * 89.99539 * 5 2 1 7 7 C 1.38265 * 120.31861 * 180.02562 * 6 5 2 8 8 C 1.38159 * 120.13163 * 359.97438 * 7 6 5 9 9 Cl 1.73597 * 120.09608 * 179.97438 * 8 7 6 10 10 C 1.39693 * 119.81215 * 359.97438 * 8 7 6 11 11 C 1.47766 * 120.15638 * 180.02562 * 10 8 7 12 12 O 1.21565 * 119.99693 * 359.97438 * 11 10 8 13 13 N 1.34777 * 120.00147 * 180.02562 * 11 10 8 14 14 C 1.46506 * 119.99873 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47035 * 179.97438 * 14 13 11 16 16 C 1.50696 * 109.47300 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99822 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00339 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99769 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00300 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46691 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47025 * 120.00050 * 20 18 16 23 23 H 1.48500 * 109.46740 * 240.00408 * 20 18 16 24 24 C 1.37905 * 119.90751 * 270.23475 * 5 2 1 25 25 H 1.09003 * 109.47015 * 308.36896 * 1 2 3 26 26 H 1.08997 * 109.47522 * 68.37132 * 1 2 3 27 27 H 1.09001 * 109.46960 * 188.37826 * 1 2 3 28 28 H 1.08003 * 119.84194 * 359.97438 * 6 5 2 29 29 H 1.07999 * 119.93712 * 179.97438 * 7 6 5 30 30 H 0.96999 * 120.00047 * 359.97438 * 13 11 10 31 31 H 1.09004 * 109.47073 * 299.99562 * 14 13 11 32 32 H 1.09000 * 109.47212 * 59.99645 * 14 13 11 33 33 H 1.09004 * 109.46930 * 299.99770 * 15 14 13 34 34 H 1.09004 * 109.47059 * 59.99372 * 15 14 13 35 35 H 0.97000 * 120.00540 * 179.97438 * 19 18 16 36 36 H 1.07992 * 120.06404 * 0.03875 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9118 5 6 2.2537 -0.6289 1.5861 6 6 2.4259 -1.9906 1.7652 7 6 2.7705 -2.4932 3.0063 8 6 2.9458 -1.6376 4.0768 9 17 3.3778 -2.2698 5.6348 10 6 2.7745 -0.2623 3.9020 11 6 2.9606 0.6597 5.0415 12 8 3.2631 0.2218 6.1345 13 7 2.7940 1.9860 4.8695 14 6 2.9780 2.9001 5.9995 15 6 2.7322 4.3379 5.5377 16 6 2.9209 5.2781 6.7001 17 1 3.1889 4.8891 7.6713 18 6 2.7514 6.6350 6.5239 19 7 2.4246 7.1088 5.3414 20 14 2.9859 7.8006 7.9647 21 1 3.3477 7.0226 9.1768 22 1 4.0724 8.7630 7.6510 23 1 1.7234 8.5424 8.2118 24 6 2.4206 0.2365 2.6468 25 1 -0.3633 0.6379 0.8057 26 1 -0.3634 0.3788 -0.9553 27 1 -0.3633 -1.0167 0.1497 28 1 2.2896 -2.6637 0.9317 29 1 2.9029 -3.5568 3.1392 30 1 2.5523 2.3354 3.9975 31 1 2.2723 2.6466 6.7906 32 1 3.9962 2.8095 6.3781 33 1 3.4383 4.5912 4.7468 34 1 1.7142 4.4288 5.1587 35 1 2.3049 8.0633 5.2174 36 1 2.2814 1.2981 2.5060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273050472.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:11 Heat of formation + Delta-G solvation = -108.757505 kcal Electronic energy + Delta-G solvation = -23079.693242 eV Core-core repulsion = 19295.340562 eV Total energy + Delta-G solvation = -3784.352681 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 3.12 seconds Orbital eigenvalues (eV) -41.41791 -39.59794 -38.15453 -37.63786 -36.97870 -36.63966 -34.89778 -33.00481 -32.32736 -31.19308 -30.21896 -27.05418 -25.14335 -24.38838 -22.98999 -21.92036 -20.13459 -19.36539 -18.56534 -17.75605 -17.60769 -17.19548 -17.11810 -16.60443 -16.59365 -16.44202 -15.91335 -15.61304 -15.19805 -14.64099 -14.30898 -14.30206 -14.12470 -13.89162 -13.79569 -13.25808 -13.19479 -13.14138 -12.95962 -12.95762 -12.85113 -12.57309 -12.41140 -12.26797 -12.09752 -11.74675 -11.64352 -11.41577 -10.70007 -10.61467 -10.45927 -10.32231 -10.02836 -8.23925 -6.34455 -0.93636 -0.67343 -0.32092 0.90277 1.41081 1.42220 1.51715 1.55098 1.86540 2.06901 2.32879 2.42788 2.99630 3.07849 3.10999 3.42055 3.46825 3.88254 3.97286 4.07800 4.16535 4.33234 4.39273 4.47496 4.50042 4.55224 4.70865 4.83019 4.85446 5.03633 5.19867 5.35385 5.46087 5.56804 5.77797 6.14987 6.46385 6.78702 7.09541 7.34959 8.88167 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.011643 B = 0.003326 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.394864 B = 8417.745302 C =10597.584127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.625 4.625 2 S 2.509 3.491 3 O -0.976 6.976 4 O -0.961 6.961 5 C -0.665 4.665 6 C 0.020 3.980 7 C -0.132 4.132 8 C 0.044 3.956 9 Cl -0.035 7.035 10 C -0.164 4.164 11 C 0.542 3.458 12 O -0.553 6.553 13 N -0.713 5.713 14 C 0.143 3.857 15 C 0.020 3.980 16 C -0.546 4.546 17 H 0.059 0.941 18 C 0.008 3.992 19 N -0.926 5.926 20 Si 0.965 3.035 21 H -0.266 1.266 22 H -0.278 1.278 23 H -0.276 1.276 24 C 0.014 3.986 25 H 0.148 0.852 26 H 0.155 0.845 27 H 0.163 0.837 28 H 0.192 0.808 29 H 0.180 0.820 30 H 0.407 0.593 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.007 0.993 34 H 0.012 0.988 35 H 0.266 0.734 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.553 -22.008 -13.347 26.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.779 4.779 2 S 2.690 3.310 3 O -0.973 6.973 4 O -0.959 6.959 5 C -0.749 4.749 6 C 0.001 3.999 7 C -0.151 4.151 8 C 0.016 3.984 9 Cl -0.005 7.005 10 C -0.169 4.169 11 C 0.329 3.671 12 O -0.433 6.433 13 N -0.365 5.365 14 C 0.019 3.981 15 C -0.017 4.017 16 C -0.584 4.584 17 H 0.077 0.923 18 C -0.191 4.191 19 N -0.565 5.565 20 Si 0.789 3.211 21 H -0.190 1.190 22 H -0.203 1.203 23 H -0.201 1.201 24 C -0.006 4.006 25 H 0.167 0.833 26 H 0.173 0.827 27 H 0.181 0.819 28 H 0.209 0.791 29 H 0.198 0.802 30 H 0.244 0.756 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.026 0.974 34 H 0.030 0.970 35 H 0.075 0.925 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.715 -21.943 -13.098 26.186 hybrid contribution -0.107 0.927 1.367 1.655 sum -5.822 -21.016 -11.731 24.763 Atomic orbital electron populations 1.30064 1.18928 1.14805 1.14151 1.05025 0.80164 0.73122 0.72656 1.93592 1.79816 1.38044 1.85860 1.93555 1.79643 1.62018 1.60636 1.30944 1.18531 1.03266 1.22151 1.21570 0.87492 0.93155 0.97664 1.21585 1.01237 1.01682 0.90578 1.21638 0.95076 0.92483 0.89193 1.98441 1.90114 1.85815 1.26124 1.19861 1.09036 0.93047 0.94922 1.18475 0.77726 0.82625 0.88291 1.90828 1.48390 1.77045 1.27023 1.46115 1.69789 1.05980 1.14592 1.21287 0.99882 0.89140 0.87749 1.19168 0.96441 0.89656 0.96473 1.21469 1.47970 0.92410 0.96558 0.92258 1.25855 0.94494 1.00087 0.98638 1.70064 1.48308 1.14160 1.23985 0.85401 0.77969 0.78473 0.79225 1.18999 1.20334 1.20126 1.21218 0.89051 1.00809 0.89508 0.83313 0.82651 0.81872 0.79085 0.80227 0.75583 0.92842 0.93301 0.97422 0.96962 0.92522 0.82493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -1.72 10.80 113.37 1.22 -0.49 16 2 S 2.51 32.36 5.79 -56.49 -0.33 32.03 16 3 O -0.98 -22.21 17.12 -127.65 -2.19 -24.40 16 4 O -0.96 -16.82 17.12 -127.65 -2.18 -19.00 16 5 C -0.66 -10.22 5.65 22.23 0.13 -10.10 16 6 C 0.02 0.24 9.46 22.32 0.21 0.45 16 7 C -0.13 -1.95 9.82 22.26 0.22 -1.73 16 8 C 0.04 1.04 6.35 22.60 0.14 1.18 16 9 Cl -0.03 -0.93 26.02 -2.72 -0.07 -1.00 16 10 C -0.16 -4.39 5.88 -20.07 -0.12 -4.51 16 11 C 0.54 18.88 7.77 86.76 0.67 19.55 16 12 O -0.55 -22.51 13.97 -3.92 -0.05 -22.57 16 13 N -0.71 -25.43 5.51 -466.02 -2.57 -28.00 16 14 C 0.14 6.15 5.61 86.38 0.48 6.64 16 15 C 0.02 1.02 5.09 29.85 0.15 1.17 16 16 C -0.55 -30.50 9.11 25.60 0.23 -30.26 16 17 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 18 C 0.01 0.46 5.46 84.65 0.46 0.92 16 19 N -0.93 -54.31 13.29 21.45 0.28 -54.02 16 20 Si 0.96 43.69 29.54 68.60 2.03 45.72 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 23 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 24 C 0.01 0.29 8.96 22.53 0.20 0.49 16 25 H 0.15 0.23 8.14 -2.39 -0.02 0.21 16 26 H 0.16 -0.02 8.14 -2.39 -0.02 -0.04 16 27 H 0.16 -0.42 8.14 -2.39 -0.02 -0.44 16 28 H 0.19 0.90 7.56 -2.91 -0.02 0.88 16 29 H 0.18 1.50 8.06 -2.91 -0.02 1.47 16 30 H 0.41 12.59 6.51 -92.71 -0.60 11.99 16 31 H 0.05 2.36 8.14 -2.38 -0.02 2.34 16 32 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 34 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 36 H 0.16 3.14 5.92 -2.91 -0.02 3.12 16 Total: -1.00 -81.55 340.71 -0.54 -82.09 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 0.53 Total: 5.85 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: 4.01 Total: -16.70 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -2.28 Total: -82.02 kcal Atomic # 8 Polarization: -61.54 SS G_CDS: -4.43 Total: -65.97 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: 32.36 SS G_CDS: -0.33 Total: 32.03 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -0.07 Total: -1.00 kcal Total: -81.55 -0.54 -82.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273050472.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.667 kcal (2) G-P(sol) polarization free energy of solvation -81.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.12 seconds