Wall clock time and date at job start Tue Mar 31 2020 16:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35981 * 116.99586 * 2 1 4 4 C 1.38721 * 120.00372 * 0.02562 * 3 2 1 5 5 C 1.38110 * 119.99973 * 179.97438 * 4 3 2 6 6 C 1.38717 * 120.00022 * 0.02562 * 5 4 3 7 7 O 1.35985 * 120.00071 * 180.02562 * 6 5 4 8 8 S 1.52200 * 114.00190 * 89.99630 * 7 6 5 9 9 O 1.42104 * 104.27305 * 191.07511 * 8 7 6 10 10 O 1.42104 * 104.27340 * 318.92806 * 8 7 6 11 11 C 1.81400 * 104.45120 * 74.99987 * 8 7 6 12 12 C 1.52997 * 109.47022 * 179.97438 * 11 8 7 13 13 C 1.50700 * 109.47023 * 180.02562 * 12 11 8 14 14 H 1.08001 * 119.99955 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99831 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00297 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99769 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46914 * 90.00295 * 17 15 13 19 19 H 1.48506 * 109.47024 * 210.00019 * 17 15 13 20 20 H 1.48499 * 109.47158 * 330.00198 * 17 15 13 21 21 C 1.38676 * 120.00186 * 0.02562 * 6 5 4 22 22 C 1.38159 * 120.00012 * 359.72593 * 21 6 5 23 23 N 1.48001 * 119.99986 * 180.30004 * 22 21 6 24 24 O 1.21797 * 120.00241 * 0.21042 * 23 22 21 25 25 O 1.21801 * 119.99638 * 180.20682 * 23 22 21 26 26 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47054 * 299.99751 * 1 2 3 28 28 H 1.09000 * 109.47187 * 59.99807 * 1 2 3 29 29 H 1.07993 * 119.99902 * 359.97438 * 4 3 2 30 30 H 1.07997 * 119.99963 * 180.02562 * 5 4 3 31 31 H 1.08993 * 109.46757 * 300.00431 * 11 8 7 32 32 H 1.09000 * 109.46536 * 60.00150 * 11 8 7 33 33 H 1.09000 * 109.47408 * 300.00628 * 12 11 8 34 34 H 1.09007 * 109.46935 * 60.00151 * 12 11 8 35 35 H 0.96996 * 119.99793 * 180.02562 * 16 15 13 36 36 H 1.08003 * 120.00143 * 180.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2908 2.3751 0.0005 5 6 1.9178 3.6056 0.0011 6 6 3.3030 3.6782 0.0005 7 8 3.9204 4.8899 0.0016 8 16 4.2020 5.4400 1.3925 9 8 4.5914 6.7874 1.1640 10 8 3.0302 5.1319 2.1350 11 6 5.6091 4.4630 1.9894 12 6 5.9923 4.9275 3.3959 13 6 7.1617 4.1163 3.8915 14 1 7.5890 3.3468 3.2657 15 6 7.6859 4.3565 5.1439 16 7 7.1652 5.2933 5.9062 17 14 9.1349 3.3505 5.7585 18 1 10.4024 4.0208 5.3719 19 1 9.0665 3.2365 7.2376 20 1 9.0878 1.9946 5.1547 21 6 4.0584 2.5152 -0.0011 22 6 3.4312 1.2842 0.0036 23 7 4.2373 0.0430 0.0086 24 8 5.4536 0.1068 0.0124 25 8 3.6844 -1.0422 0.0089 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.2123 2.3185 0.0005 30 1 1.3296 4.5114 0.0019 31 1 5.3338 3.4088 2.0167 32 1 6.4570 4.5999 1.3183 33 1 6.2676 5.9818 3.3680 34 1 5.1444 4.7910 4.0672 35 1 7.5343 5.4625 6.7870 36 1 5.1369 2.5718 -0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277021606.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:39 Heat of formation + Delta-G solvation = -114.227626 kcal Electronic energy + Delta-G solvation = -26625.829431 eV Core-core repulsion = 22400.530383 eV Total energy + Delta-G solvation = -4225.299047 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.070 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.40355 -41.34721 -40.15714 -37.50089 -36.95634 -36.48432 -35.87401 -34.03501 -32.62861 -31.34414 -30.51874 -28.05320 -26.80596 -25.76084 -23.74062 -23.15271 -21.89520 -20.89068 -19.48282 -18.83970 -18.65224 -17.91069 -17.65125 -17.56749 -17.32011 -16.65330 -16.35801 -15.88131 -15.34550 -15.24344 -14.81112 -14.58146 -13.92432 -13.66859 -13.45665 -13.38987 -12.70506 -12.54966 -12.47121 -12.12028 -11.96149 -11.92792 -11.88478 -11.62103 -11.54517 -11.14011 -11.12392 -11.08992 -11.08279 -10.51576 -10.48154 -10.20313 -9.82033 -9.33385 -9.06486 -8.54271 -6.16905 -4.22862 -0.42792 -0.04583 0.62971 1.09808 1.18606 2.12477 2.37255 2.63091 3.26352 3.32736 3.36768 3.72870 3.84488 3.86993 4.03214 4.10860 4.32440 4.35196 4.50237 4.59262 4.61154 4.77102 4.98171 5.09444 5.18570 5.22303 5.32811 5.40936 5.48571 5.87068 6.16259 6.29406 6.43952 7.18346 7.23632 7.61855 7.76584 8.10056 8.80572 9.42932 10.94012 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.011655 B = 0.004311 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.807173 B = 6493.700950 C = 8057.019965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.276 6.276 3 C 0.207 3.793 4 C -0.195 4.195 5 C -0.001 4.001 6 C 0.047 3.953 7 O -0.664 6.664 8 S 2.566 3.434 9 O -0.927 6.927 10 O -0.959 6.959 11 C -0.611 4.611 12 C 0.032 3.968 13 C -0.523 4.523 14 H 0.064 0.936 15 C 0.060 3.940 16 N -0.891 5.891 17 Si 0.900 3.100 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.271 1.271 21 C -0.032 4.032 22 C -0.065 4.065 23 N 0.036 4.964 24 O -0.163 6.163 25 O -0.131 6.131 26 H 0.114 0.886 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.167 0.833 30 H 0.163 0.837 31 H 0.119 0.881 32 H 0.131 0.869 33 H 0.037 0.963 34 H 0.035 0.965 35 H 0.266 0.734 36 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.717 -7.696 -14.626 22.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.186 6.186 3 C 0.156 3.844 4 C -0.215 4.215 5 C -0.021 4.021 6 C 0.004 3.996 7 O -0.622 6.622 8 S 2.667 3.333 9 O -0.925 6.925 10 O -0.957 6.957 11 C -0.743 4.743 12 C -0.007 4.007 13 C -0.562 4.562 14 H 0.082 0.918 15 C -0.143 4.143 16 N -0.529 5.529 17 Si 0.727 3.273 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.195 1.195 21 C -0.053 4.053 22 C -0.150 4.150 23 N 0.557 4.443 24 O -0.375 6.375 25 O -0.352 6.352 26 H 0.132 0.868 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.184 0.816 30 H 0.181 0.819 31 H 0.138 0.862 32 H 0.150 0.850 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -16.498 -6.565 -14.690 23.045 hybrid contribution 1.384 -0.783 0.592 1.697 sum -15.114 -7.348 -14.098 21.936 Atomic orbital electron populations 1.23410 0.76663 1.05641 1.02216 1.86464 1.22740 1.23831 1.85557 1.18738 0.89364 0.86782 0.89501 1.21206 1.01597 0.89765 1.08889 1.21547 0.92515 0.99714 0.88345 1.17370 0.90765 0.80597 1.10848 1.85850 1.78480 1.38276 1.59620 1.06405 0.77786 0.76472 0.72676 1.93611 1.84610 1.32183 1.82074 1.93586 1.46019 1.85087 1.71046 1.30737 1.17122 1.13544 1.12851 1.18964 0.98902 0.98110 0.84682 1.20997 1.14724 1.19368 1.01102 0.91778 1.25054 0.97370 0.95317 0.96591 1.69949 1.41224 1.31368 1.10328 0.86453 0.82269 0.80542 0.78006 1.20354 1.20992 1.19540 1.21071 1.03482 0.88402 0.92307 1.20048 0.88171 0.85808 1.21003 1.43122 1.01199 1.01920 0.98099 1.94602 0.94985 1.93771 1.54137 1.94581 1.74268 1.14233 1.52143 0.86756 0.91401 0.91647 0.81591 0.81940 0.86237 0.85038 0.94506 0.94666 0.92466 0.80312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 101.05 0.99 1.06 16 2 O -0.28 -2.61 8.50 -41.84 -0.36 -2.97 16 3 C 0.21 2.14 6.67 -39.24 -0.26 1.88 16 4 C -0.20 -1.55 9.03 -39.45 -0.36 -1.91 16 5 C 0.00 -0.01 9.04 -39.45 -0.36 -0.37 16 6 C 0.05 0.60 4.80 -39.24 -0.19 0.41 16 7 O -0.66 -9.38 10.05 -52.02 -0.52 -9.90 16 8 S 2.57 44.53 5.17 -107.50 -0.56 43.98 16 9 O -0.93 -18.91 18.09 -67.04 -1.21 -20.13 16 10 O -0.96 -17.65 16.26 -67.04 -1.09 -18.74 16 11 C -0.61 -11.38 5.40 37.16 0.20 -11.18 16 12 C 0.03 0.80 4.98 -27.88 -0.14 0.66 16 13 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 14 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 17 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 C -0.03 -0.40 7.96 -39.45 -0.31 -0.71 16 22 C -0.07 -0.84 6.86 -79.82 -0.55 -1.39 16 23 N 0.04 0.54 4.45 34.02 0.15 0.69 16 24 O -0.16 -2.62 18.45 -29.46 -0.54 -3.16 16 25 O -0.13 -2.00 17.23 -36.50 -0.63 -2.63 16 26 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.22 7.66 -51.93 -0.40 -0.18 16 28 H 0.06 0.15 7.66 -51.93 -0.40 -0.24 16 29 H 0.17 0.64 6.29 -52.49 -0.33 0.31 16 30 H 0.16 1.25 8.06 -52.49 -0.42 0.82 16 31 H 0.12 2.01 6.60 -51.93 -0.34 1.66 16 32 H 0.13 2.16 8.14 -51.92 -0.42 1.74 16 33 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.18 2.05 7.04 -52.48 -0.37 1.68 16 LS Contribution 333.41 15.07 5.02 5.02 Total: -1.00 -35.89 333.41 -8.89 -44.79 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: -3.49 Total: -3.21 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: -1.38 Total: -24.58 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.89 Total: -24.72 kcal Atomic # 8 Polarization: -53.18 SS G_CDS: -4.35 Total: -57.53 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 44.53 SS G_CDS: -0.56 Total: 43.98 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.89 -8.89 -44.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277021606.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.441 kcal (2) G-P(sol) polarization free energy of solvation -35.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds