Wall clock time and date at job start Tue Mar 31 2020 16:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35981 * 116.99586 * 2 1 4 4 C 1.38721 * 120.00372 * 0.02562 * 3 2 1 5 5 C 1.38110 * 119.99973 * 179.97438 * 4 3 2 6 6 C 1.38717 * 120.00022 * 0.02562 * 5 4 3 7 7 O 1.35985 * 120.00071 * 180.02562 * 6 5 4 8 8 S 1.52200 * 114.00190 * 89.99630 * 7 6 5 9 9 O 1.42104 * 104.27305 * 191.07511 * 8 7 6 10 10 O 1.42104 * 104.27340 * 318.92806 * 8 7 6 11 11 C 1.81400 * 104.45120 * 74.99987 * 8 7 6 12 12 C 1.52997 * 109.47022 * 179.97438 * 11 8 7 13 13 C 1.50700 * 109.47023 * 180.02562 * 12 11 8 14 14 H 1.08001 * 119.99955 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99831 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00297 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99769 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46914 * 90.00295 * 17 15 13 19 19 H 1.48506 * 109.47024 * 210.00019 * 17 15 13 20 20 H 1.48499 * 109.47158 * 330.00198 * 17 15 13 21 21 C 1.38676 * 120.00186 * 0.02562 * 6 5 4 22 22 C 1.38159 * 120.00012 * 359.72593 * 21 6 5 23 23 N 1.48001 * 119.99986 * 180.30004 * 22 21 6 24 24 O 1.21797 * 120.00241 * 0.21042 * 23 22 21 25 25 O 1.21801 * 119.99638 * 180.20682 * 23 22 21 26 26 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47054 * 299.99751 * 1 2 3 28 28 H 1.09000 * 109.47187 * 59.99807 * 1 2 3 29 29 H 1.07993 * 119.99902 * 359.97438 * 4 3 2 30 30 H 1.07997 * 119.99963 * 180.02562 * 5 4 3 31 31 H 1.08993 * 109.46757 * 300.00431 * 11 8 7 32 32 H 1.09000 * 109.46536 * 60.00150 * 11 8 7 33 33 H 1.09000 * 109.47408 * 300.00628 * 12 11 8 34 34 H 1.09007 * 109.46935 * 60.00151 * 12 11 8 35 35 H 0.96996 * 119.99793 * 180.02562 * 16 15 13 36 36 H 1.08003 * 120.00143 * 180.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2908 2.3751 0.0005 5 6 1.9178 3.6056 0.0011 6 6 3.3030 3.6782 0.0005 7 8 3.9204 4.8899 0.0016 8 16 4.2020 5.4400 1.3925 9 8 4.5914 6.7874 1.1640 10 8 3.0302 5.1319 2.1350 11 6 5.6091 4.4630 1.9894 12 6 5.9923 4.9275 3.3959 13 6 7.1617 4.1163 3.8915 14 1 7.5890 3.3468 3.2657 15 6 7.6859 4.3565 5.1439 16 7 7.1652 5.2933 5.9062 17 14 9.1349 3.3505 5.7585 18 1 10.4024 4.0208 5.3719 19 1 9.0665 3.2365 7.2376 20 1 9.0878 1.9946 5.1547 21 6 4.0584 2.5152 -0.0011 22 6 3.4312 1.2842 0.0036 23 7 4.2373 0.0430 0.0086 24 8 5.4536 0.1068 0.0124 25 8 3.6844 -1.0422 0.0089 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.2123 2.3185 0.0005 30 1 1.3296 4.5114 0.0019 31 1 5.3338 3.4088 2.0167 32 1 6.4570 4.5999 1.3183 33 1 6.2676 5.9818 3.3680 34 1 5.1444 4.7910 4.0672 35 1 7.5343 5.4625 6.7870 36 1 5.1369 2.5718 -0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277021606.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:36 Heat of formation + Delta-G solvation = -138.868050 kcal Electronic energy + Delta-G solvation = -26626.897920 eV Core-core repulsion = 22400.530383 eV Total energy + Delta-G solvation = -4226.367536 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.070 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.43372 -42.39857 -40.99181 -38.50935 -38.29066 -37.60117 -37.35293 -35.98053 -33.53847 -33.19051 -31.37976 -28.54502 -27.94210 -27.54166 -24.75724 -24.12818 -23.54563 -22.06491 -20.52532 -19.92607 -19.69217 -19.15126 -18.78164 -18.71447 -18.41470 -18.31891 -17.19515 -16.95843 -16.63932 -16.53450 -16.10486 -15.62980 -15.29418 -14.73333 -14.57389 -14.40039 -14.19312 -13.84415 -13.69455 -13.46734 -13.38549 -13.28890 -12.98412 -12.87786 -12.76130 -12.71335 -12.36188 -12.30366 -12.26263 -12.18038 -12.13279 -11.80603 -11.19436 -11.02587 -10.66643 -9.93737 -8.29258 -6.42420 -1.39427 -1.24480 -0.39441 0.07341 0.17405 0.93113 1.40009 1.40654 1.52311 1.71217 1.79658 2.33866 2.43710 2.73069 3.02045 3.04813 3.10400 3.27110 3.45239 3.59238 3.83446 3.87015 3.99541 4.24484 4.35607 4.39585 4.49154 4.60651 4.63143 4.81153 4.91290 5.13078 5.19650 5.21871 5.65343 5.78800 6.02524 6.44898 6.70207 7.27935 8.82754 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.011655 B = 0.004311 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.807173 B = 6493.700950 C = 8057.019965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.294 6.294 3 C 0.217 3.783 4 C -0.174 4.174 5 C 0.003 3.997 6 C 0.014 3.986 7 O -0.649 6.649 8 S 2.602 3.398 9 O -0.960 6.960 10 O -0.969 6.969 11 C -0.618 4.618 12 C 0.026 3.974 13 C -0.542 4.542 14 H 0.072 0.928 15 C 0.003 3.997 16 N -0.930 5.930 17 Si 0.968 3.032 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.263 1.263 21 C -0.037 4.037 22 C -0.089 4.089 23 N 0.038 4.962 24 O -0.206 6.206 25 O -0.133 6.133 26 H 0.128 0.872 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.217 0.783 30 H 0.190 0.810 31 H 0.136 0.864 32 H 0.150 0.850 33 H 0.014 0.986 34 H 0.015 0.985 35 H 0.268 0.732 36 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.868 -8.747 -15.627 25.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.203 6.203 3 C 0.165 3.835 4 C -0.192 4.192 5 C -0.017 4.017 6 C -0.029 4.029 7 O -0.607 6.607 8 S 2.701 3.299 9 O -0.959 6.959 10 O -0.967 6.967 11 C -0.747 4.747 12 C -0.013 4.013 13 C -0.581 4.581 14 H 0.090 0.910 15 C -0.196 4.196 16 N -0.569 5.569 17 Si 0.792 3.208 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.187 1.187 21 C -0.058 4.058 22 C -0.175 4.175 23 N 0.553 4.447 24 O -0.409 6.409 25 O -0.356 6.356 26 H 0.146 0.854 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.233 0.767 30 H 0.207 0.793 31 H 0.154 0.846 32 H 0.168 0.832 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.077 0.923 36 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -18.579 -7.618 -15.688 25.482 hybrid contribution 1.777 -0.578 0.799 2.032 sum -16.802 -8.196 -14.890 23.899 Atomic orbital electron populations 1.23881 0.73728 1.07472 1.04323 1.86470 1.25761 1.23530 1.84589 1.18969 0.88560 0.88154 0.87799 1.21715 1.03594 0.87712 1.06219 1.22005 0.91396 1.01703 0.86579 1.17738 0.92044 0.79551 1.13611 1.85812 1.78728 1.39204 1.56999 1.05269 0.76638 0.75278 0.72691 1.93566 1.84965 1.34287 1.83054 1.93549 1.46043 1.85051 1.72090 1.30671 1.19413 1.14956 1.09683 1.18786 0.97668 0.96794 0.88018 1.21489 1.15462 1.19633 1.01518 0.91020 1.26004 1.00272 0.96412 0.96952 1.70071 1.42947 1.33092 1.10830 0.85397 0.78823 0.79154 0.77451 1.19464 1.20556 1.18691 1.21096 1.03787 0.88599 0.92336 1.20189 0.89129 0.84574 1.23600 1.43416 1.01177 1.02629 0.97453 1.94591 0.95991 1.94122 1.56212 1.94540 1.74087 1.15282 1.51725 0.85372 0.89694 0.88956 0.76670 0.79320 0.84614 0.83190 0.96743 0.96683 0.92277 0.80393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 9.81 113.37 1.11 1.11 16 2 O -0.29 -4.68 8.50 -72.15 -0.61 -5.29 16 3 C 0.22 3.89 6.67 22.49 0.15 4.04 16 4 C -0.17 -1.98 9.03 22.35 0.20 -1.78 16 5 C 0.00 0.05 9.04 22.35 0.20 0.25 16 6 C 0.01 0.32 4.80 22.49 0.11 0.42 16 7 O -0.65 -17.53 10.05 -62.47 -0.63 -18.16 16 8 S 2.60 89.41 5.17 -56.49 -0.29 89.12 16 9 O -0.96 -39.40 18.09 -118.57 -2.15 -41.55 16 10 O -0.97 -34.71 16.26 -118.57 -1.93 -36.64 16 11 C -0.62 -23.25 5.40 71.98 0.39 -22.86 16 12 C 0.03 1.33 4.98 29.85 0.15 1.48 16 13 C -0.54 -30.14 9.11 25.60 0.23 -29.90 16 14 H 0.07 3.76 7.74 -2.91 -0.02 3.74 16 15 C 0.00 0.15 5.46 84.65 0.46 0.61 16 16 N -0.93 -55.89 13.29 21.45 0.28 -55.60 16 17 Si 0.97 43.88 29.54 68.60 2.03 45.91 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 20 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 21 C -0.04 -0.90 7.96 22.36 0.18 -0.72 16 22 C -0.09 -2.21 6.86 36.47 0.25 -1.96 16 23 N 0.04 1.15 4.45 -46.27 -0.21 0.94 16 24 O -0.21 -6.87 18.45 18.89 0.35 -6.52 16 25 O -0.13 -4.01 17.23 25.62 0.44 -3.57 16 26 H 0.13 0.22 8.14 -2.39 -0.02 0.20 16 27 H 0.08 0.11 7.66 -2.38 -0.02 0.10 16 28 H 0.09 -0.07 7.66 -2.39 -0.02 -0.08 16 29 H 0.22 0.24 6.29 -2.91 -0.02 0.22 16 30 H 0.19 2.06 8.06 -2.91 -0.02 2.03 16 31 H 0.14 4.59 6.60 -2.39 -0.02 4.58 16 32 H 0.15 4.97 8.14 -2.39 -0.02 4.95 16 33 H 0.01 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.01 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 36 H 0.18 4.17 7.04 -2.91 -0.02 4.15 16 Total: -1.00 -80.34 333.41 1.86 -78.48 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: 1.14 Total: 2.21 kcal Atomic # 6 Polarization: -52.76 SS G_CDS: 3.44 Total: -49.33 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: 0.08 Total: -54.66 kcal Atomic # 8 Polarization: -107.20 SS G_CDS: -4.52 Total: -111.73 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: 89.41 SS G_CDS: -0.29 Total: 89.12 kcal Total: -80.34 1.86 -78.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277021606.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.391 kcal (2) G-P(sol) polarization free energy of solvation -80.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds