Wall clock time and date at job start Tue Mar 31 2020 16:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.38292 * 127.14805 * 2 1 4 4 C 1.39785 * 126.57149 * 0.02562 * 3 2 1 5 5 H 1.07999 * 119.99568 * 5.78310 * 4 3 2 6 6 C 1.40085 * 120.00278 * 185.77601 * 4 3 2 7 7 N 1.30808 * 119.99942 * 184.12703 * 6 4 3 8 8 Si 1.86799 * 119.99976 * 4.13484 * 6 4 3 9 9 H 1.48499 * 109.47360 * 179.97438 * 8 6 4 10 10 H 1.48508 * 109.47012 * 299.99543 * 8 6 4 11 11 H 1.48501 * 109.47425 * 59.99261 * 8 6 4 12 12 N 1.33119 * 106.86404 * 179.74399 * 3 2 1 13 13 N 1.28523 * 109.72545 * 0.26181 * 12 3 2 14 14 C 1.32303 * 110.20987 * 0.02562 * 13 12 3 15 15 S 1.76195 * 126.24834 * 179.97438 * 14 13 12 16 16 C 1.76191 * 100.00322 * 0.02589 * 15 14 13 17 17 N 1.32523 * 119.21556 * 359.72771 * 16 15 14 18 18 C 1.32228 * 120.74283 * 179.75315 * 17 16 15 19 19 C 1.38670 * 119.19571 * 0.51570 * 18 17 16 20 20 C 1.38626 * 118.54873 * 359.73913 * 19 18 17 21 21 C 1.50699 * 120.40020 * 179.97438 * 20 19 18 22 22 F 1.39902 * 109.47157 * 185.02659 * 21 20 19 23 23 F 1.39899 * 109.47404 * 305.02391 * 21 20 19 24 24 F 1.39899 * 109.47203 * 65.02628 * 21 20 19 25 25 N 1.32260 * 119.19318 * 0.02562 * 20 19 18 26 26 H 1.08994 * 109.47817 * 89.99763 * 1 2 3 27 27 H 1.09004 * 109.46989 * 209.99754 * 1 2 3 28 28 H 1.09005 * 109.47022 * 329.99414 * 1 2 3 29 29 H 0.97000 * 119.99802 * 354.84965 * 7 6 4 30 30 H 1.08004 * 120.40241 * 180.23536 * 18 17 16 31 31 H 1.08000 * 120.72655 * 179.77008 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3001 1.1023 0.0000 4 6 1.9082 2.4441 0.0005 5 1 0.8636 2.7015 0.0952 6 6 2.8704 3.4549 -0.1217 7 7 2.5136 4.7107 -0.0402 8 14 4.6628 3.0093 -0.4011 9 1 5.4725 4.2505 -0.4958 10 1 5.1506 2.1850 0.7338 11 1 4.7902 2.2381 -1.6637 12 7 3.5487 0.6408 0.0057 13 7 3.5362 -0.6444 0.0036 14 6 2.2902 -1.0893 -0.0041 15 16 1.7870 -2.7778 -0.0102 16 6 3.3624 -3.5667 -0.0024 17 7 4.4587 -2.8222 -0.0001 18 6 5.6563 -3.3825 0.0106 19 6 5.7561 -4.7656 0.0086 20 6 4.5892 -5.5140 0.0008 21 6 4.6490 -7.0198 -0.0023 22 9 3.3552 -7.5376 -0.1258 23 9 5.4295 -7.4533 -1.0794 24 9 5.2177 -7.4664 1.1953 25 7 3.4229 -4.8903 -0.0049 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5140 29 1 1.5748 4.9447 0.0297 30 1 6.5461 -2.7703 0.0163 31 1 6.7217 -5.2492 0.0134 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280172059.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:35 Heat of formation + Delta-G solvation = -18.296722 kcal Electronic energy + Delta-G solvation = -24977.892692 eV Core-core repulsion = 20586.791202 eV Total energy + Delta-G solvation = -4391.101490 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.041 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -50.43556 -47.98202 -47.86478 -41.07077 -41.00425 -34.34231 -33.99470 -33.68338 -32.63280 -30.09918 -27.59933 -26.83332 -25.58607 -24.69878 -23.40398 -21.55897 -20.41547 -19.42617 -18.92497 -18.83139 -18.29890 -17.62508 -16.95644 -15.86205 -15.67758 -15.38441 -15.04286 -14.90700 -14.70557 -14.68855 -14.34178 -14.09550 -14.03162 -14.02153 -13.78847 -13.34654 -12.90026 -12.69824 -12.65368 -12.08604 -11.72572 -11.21091 -11.08797 -10.92475 -10.81630 -10.60300 -9.97051 -9.72146 -9.46947 -9.14815 -9.06015 -8.75157 -8.47094 -7.52930 -7.35209 -4.95459 0.37494 0.69361 1.08062 2.04040 2.15479 2.80148 3.20418 3.32416 3.51429 3.56455 3.60651 3.77808 3.97782 4.07403 4.12038 4.21719 4.35666 4.47090 4.63568 4.81175 5.03255 5.19062 5.24937 5.62601 5.81087 5.91224 6.30538 6.53061 6.61114 7.01480 7.30849 7.45787 7.67017 7.96041 8.25320 8.45846 9.87671 10.06483 Molecular weight = 331.04amu Principal moments of inertia in cm(-1) A = 0.024659 B = 0.003288 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.209177 B = 8514.824067 C = 9462.342669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.513 5.513 3 C 0.349 3.651 4 C -0.487 4.487 5 H 0.084 0.916 6 C 0.064 3.936 7 N -0.803 5.803 8 Si 1.112 2.888 9 H -0.311 1.311 10 H -0.259 1.259 11 H -0.280 1.280 12 N -0.418 5.418 13 N -0.189 5.189 14 C 0.001 3.999 15 S 0.229 5.771 16 C 0.284 3.716 17 N -0.427 5.427 18 C 0.174 3.826 19 C -0.195 4.195 20 C 0.092 3.908 21 C 0.527 3.473 22 F -0.159 7.159 23 F -0.168 7.168 24 F -0.168 7.168 25 N -0.474 5.474 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.284 0.716 30 H 0.185 0.815 31 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.815 -17.909 -0.030 18.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.216 5.216 3 C 0.108 3.892 4 C -0.528 4.528 5 H 0.102 0.898 6 C -0.159 4.159 7 N -0.426 5.426 8 Si 0.941 3.059 9 H -0.241 1.241 10 H -0.184 1.184 11 H -0.206 1.206 12 N -0.270 5.270 13 N -0.033 5.033 14 C -0.370 4.370 15 S 0.465 5.535 16 C -0.092 4.092 17 N -0.142 5.142 18 C 0.002 3.998 19 C -0.223 4.223 20 C -0.060 4.060 21 C 0.471 3.529 22 F -0.140 7.140 23 F -0.149 7.149 24 F -0.149 7.149 25 N -0.191 5.191 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.202 0.798 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.538 -17.233 -0.160 17.420 hybrid contribution -1.251 -0.669 0.189 1.431 sum 1.287 -17.902 0.029 17.948 Atomic orbital electron populations 1.21582 0.77807 1.03058 1.02154 1.45772 1.06241 1.04528 1.65034 1.21737 0.85322 0.88925 0.93251 1.19459 0.97520 0.87266 1.48541 0.89790 1.27403 1.08582 0.91222 0.88694 1.70676 1.21669 1.18502 1.31796 0.82706 0.70489 0.72199 0.80555 1.24139 1.18423 1.20614 1.74168 1.15768 1.01758 1.35307 1.74788 1.14063 1.03921 1.10549 1.25395 0.91796 0.93157 1.26689 1.83477 0.94909 0.88519 1.86615 1.25172 0.99867 0.87957 0.96172 1.69718 0.97788 1.37381 1.09273 1.23643 0.96765 0.91347 0.88072 1.22582 0.99575 0.96962 1.03164 1.21189 0.91320 0.93328 1.00172 1.17741 0.74485 0.86516 0.74124 1.93253 1.37151 1.88142 1.95484 1.93242 1.75089 1.90836 1.55761 1.93246 1.85009 1.90456 1.46217 1.67903 1.27088 1.10149 1.13996 0.91973 0.91366 0.89993 0.90444 0.79848 0.82507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.62 10.88 59.84 0.65 2.27 16 2 N -0.51 -11.35 3.26 -123.22 -0.40 -11.75 16 3 C 0.35 8.96 7.27 -154.85 -1.13 7.83 16 4 C -0.49 -12.62 9.50 -38.31 -0.36 -12.98 16 5 H 0.08 2.10 7.46 -52.49 -0.39 1.71 16 6 C 0.06 1.68 5.52 -17.29 -0.10 1.59 16 7 N -0.80 -20.97 13.65 55.56 0.76 -20.21 16 8 Si 1.11 27.15 25.90 -169.99 -4.40 22.74 16 9 H -0.31 -7.33 7.11 56.52 0.40 -6.93 16 10 H -0.26 -6.49 6.76 56.52 0.38 -6.10 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 N -0.42 -11.18 7.52 31.25 0.23 -10.94 16 13 N -0.19 -4.67 9.30 30.88 0.29 -4.39 16 14 C 0.00 0.03 8.04 -87.36 -0.70 -0.68 16 15 S 0.23 3.88 22.18 -107.50 -2.38 1.49 16 16 C 0.28 4.89 7.84 -90.92 -0.71 4.18 16 17 N -0.43 -7.62 7.15 -13.46 -0.10 -7.72 16 18 C 0.17 2.28 11.30 -17.22 -0.19 2.09 16 19 C -0.20 -2.13 9.74 -39.28 -0.38 -2.52 16 20 C 0.09 1.20 6.29 -82.26 -0.52 0.68 16 21 C 0.53 5.96 3.34 36.01 0.12 6.08 16 22 F -0.16 -1.98 16.89 2.25 0.04 -1.95 16 23 F -0.17 -1.76 17.18 2.25 0.04 -1.72 16 24 F -0.17 -1.80 17.29 2.25 0.04 -1.76 16 25 N -0.47 -7.38 9.83 -9.69 -0.10 -7.47 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.07 0.93 7.85 -51.93 -0.41 0.53 16 28 H 0.08 1.31 7.48 -51.93 -0.39 0.92 16 29 H 0.28 7.03 8.72 -40.82 -0.36 6.67 16 30 H 0.18 1.84 8.06 -52.48 -0.42 1.42 16 31 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 306.62 15.07 4.62 4.62 Total: -1.00 -31.36 306.62 -6.31 -37.67 By element: Atomic # 1 Polarization: -5.56 SS G_CDS: -1.63 Total: -7.19 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: -3.32 Total: 8.55 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: 0.69 Total: -62.47 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.12 Total: -5.42 kcal Atomic # 14 Polarization: 27.15 SS G_CDS: -4.40 Total: 22.74 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -2.38 Total: 1.49 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.36 -6.31 -37.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280172059.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.377 kcal (2) G-P(sol) polarization free energy of solvation -31.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds