Wall clock time and date at job start Tue Mar 31 2020 16:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.38292 * 127.14805 * 2 1 4 4 C 1.39785 * 126.57149 * 0.02562 * 3 2 1 5 5 H 1.07999 * 119.99568 * 5.78310 * 4 3 2 6 6 C 1.40085 * 120.00278 * 185.77601 * 4 3 2 7 7 N 1.30808 * 119.99942 * 184.12703 * 6 4 3 8 8 Si 1.86799 * 119.99976 * 4.13484 * 6 4 3 9 9 H 1.48499 * 109.47360 * 179.97438 * 8 6 4 10 10 H 1.48508 * 109.47012 * 299.99543 * 8 6 4 11 11 H 1.48501 * 109.47425 * 59.99261 * 8 6 4 12 12 N 1.33119 * 106.86404 * 179.74399 * 3 2 1 13 13 N 1.28523 * 109.72545 * 0.26181 * 12 3 2 14 14 C 1.32303 * 110.20987 * 0.02562 * 13 12 3 15 15 S 1.76195 * 126.24834 * 179.97438 * 14 13 12 16 16 C 1.76191 * 100.00322 * 0.02589 * 15 14 13 17 17 N 1.32523 * 119.21556 * 359.72771 * 16 15 14 18 18 C 1.32228 * 120.74283 * 179.75315 * 17 16 15 19 19 C 1.38670 * 119.19571 * 0.51570 * 18 17 16 20 20 C 1.38626 * 118.54873 * 359.73913 * 19 18 17 21 21 C 1.50699 * 120.40020 * 179.97438 * 20 19 18 22 22 F 1.39902 * 109.47157 * 185.02659 * 21 20 19 23 23 F 1.39899 * 109.47404 * 305.02391 * 21 20 19 24 24 F 1.39899 * 109.47203 * 65.02628 * 21 20 19 25 25 N 1.32260 * 119.19318 * 0.02562 * 20 19 18 26 26 H 1.08994 * 109.47817 * 89.99763 * 1 2 3 27 27 H 1.09004 * 109.46989 * 209.99754 * 1 2 3 28 28 H 1.09005 * 109.47022 * 329.99414 * 1 2 3 29 29 H 0.97000 * 119.99802 * 354.84965 * 7 6 4 30 30 H 1.08004 * 120.40241 * 180.23536 * 18 17 16 31 31 H 1.08000 * 120.72655 * 179.77008 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3001 1.1023 0.0000 4 6 1.9082 2.4441 0.0005 5 1 0.8636 2.7015 0.0952 6 6 2.8704 3.4549 -0.1217 7 7 2.5136 4.7107 -0.0402 8 14 4.6628 3.0093 -0.4011 9 1 5.4725 4.2505 -0.4958 10 1 5.1506 2.1850 0.7338 11 1 4.7902 2.2381 -1.6637 12 7 3.5487 0.6408 0.0057 13 7 3.5362 -0.6444 0.0036 14 6 2.2902 -1.0893 -0.0041 15 16 1.7870 -2.7778 -0.0102 16 6 3.3624 -3.5667 -0.0024 17 7 4.4587 -2.8222 -0.0001 18 6 5.6563 -3.3825 0.0106 19 6 5.7561 -4.7656 0.0086 20 6 4.5892 -5.5140 0.0008 21 6 4.6490 -7.0198 -0.0023 22 9 3.3552 -7.5376 -0.1258 23 9 5.4295 -7.4533 -1.0794 24 9 5.2177 -7.4664 1.1953 25 7 3.4229 -4.8903 -0.0049 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5140 29 1 1.5748 4.9447 0.0297 30 1 6.5461 -2.7703 0.0163 31 1 6.7217 -5.2492 0.0134 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280172059.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:35 Heat of formation + Delta-G solvation = -36.809800 kcal Electronic energy + Delta-G solvation = -24978.695479 eV Core-core repulsion = 20586.791202 eV Total energy + Delta-G solvation = -4391.904277 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.041 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.32954 -48.84462 -48.78845 -42.82127 -42.17691 -35.94374 -35.45656 -35.35865 -33.71167 -31.95602 -28.70948 -28.31541 -27.24534 -25.94840 -24.42727 -23.33897 -22.17481 -20.48875 -20.18589 -19.93613 -19.71428 -18.83142 -18.13533 -17.28378 -16.90730 -16.79311 -16.47216 -16.30429 -15.69443 -15.63003 -15.61094 -15.29295 -15.21929 -14.98468 -14.92490 -14.92206 -14.65737 -14.16713 -13.69121 -13.57939 -13.17018 -12.98307 -12.64022 -12.32949 -12.07481 -11.85190 -11.82993 -11.43573 -11.31003 -10.78565 -10.50157 -10.39331 -10.34365 -9.48728 -8.87200 -6.87409 -0.68301 -0.38715 -0.24584 0.56886 0.98198 1.16795 1.56800 1.64880 1.96563 2.19540 2.20829 2.23512 2.27308 2.43877 2.64842 3.07072 3.15811 3.16928 3.43961 3.65795 3.92094 3.97595 4.21420 4.35028 4.50640 4.58265 4.71178 4.97846 5.22905 5.37883 5.49594 5.71926 6.02170 6.39841 6.54748 6.58130 7.93260 8.22182 Molecular weight = 331.04amu Principal moments of inertia in cm(-1) A = 0.024659 B = 0.003288 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.209177 B = 8514.824067 C = 9462.342669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.514 5.514 3 C 0.330 3.670 4 C -0.506 4.506 5 H 0.084 0.916 6 C 0.042 3.958 7 N -0.822 5.822 8 Si 1.146 2.854 9 H -0.300 1.300 10 H -0.274 1.274 11 H -0.293 1.293 12 N -0.449 5.449 13 N -0.223 5.223 14 C 0.019 3.981 15 S 0.270 5.730 16 C 0.258 3.742 17 N -0.470 5.470 18 C 0.166 3.834 19 C -0.162 4.162 20 C 0.076 3.924 21 C 0.538 3.462 22 F -0.167 7.167 23 F -0.160 7.160 24 F -0.162 7.162 25 N -0.483 5.483 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.286 0.714 30 H 0.211 0.789 31 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.324 -20.441 -0.054 20.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.214 5.214 3 C 0.084 3.916 4 C -0.547 4.547 5 H 0.102 0.898 6 C -0.178 4.178 7 N -0.447 5.447 8 Si 0.975 3.025 9 H -0.230 1.230 10 H -0.200 1.200 11 H -0.221 1.221 12 N -0.300 5.300 13 N -0.065 5.065 14 C -0.355 4.355 15 S 0.504 5.496 16 C -0.118 4.118 17 N -0.186 5.186 18 C -0.005 4.005 19 C -0.188 4.188 20 C -0.075 4.075 21 C 0.482 3.518 22 F -0.148 7.148 23 F -0.141 7.141 24 F -0.143 7.143 25 N -0.200 5.200 26 H 0.100 0.900 27 H 0.118 0.882 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.228 0.772 31 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 3.067 -19.786 -0.183 20.023 hybrid contribution -1.363 -0.269 0.198 1.403 sum 1.705 -20.055 0.015 20.128 Atomic orbital electron populations 1.21982 0.74649 1.04842 1.03997 1.46127 1.08262 1.03737 1.63315 1.21799 0.85943 0.89712 0.94127 1.19444 0.97509 0.87627 1.50103 0.89753 1.27804 1.09815 0.91448 0.88747 1.70671 1.21924 1.18552 1.33576 0.82200 0.69519 0.71731 0.79061 1.22974 1.20015 1.22100 1.74050 1.16865 1.03089 1.35959 1.74757 1.15583 1.03036 1.13170 1.26339 0.91312 0.95613 1.22199 1.83211 0.94994 0.84201 1.87169 1.25093 0.99911 0.88610 0.98159 1.69607 0.99344 1.39035 1.10589 1.24187 0.96196 0.92792 0.87350 1.23038 1.00846 0.95905 0.98972 1.21621 0.91390 0.94303 1.00191 1.17470 0.74342 0.85535 0.74477 1.93242 1.37861 1.88140 1.95555 1.93265 1.74769 1.90635 1.55409 1.93266 1.84834 1.90272 1.45906 1.67854 1.28604 1.09419 1.14137 0.90046 0.88206 0.89639 0.90227 0.77218 0.77923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.72 10.88 127.77 1.39 4.11 16 2 N -0.51 -22.33 3.26 -543.74 -1.77 -24.10 16 3 C 0.33 17.08 7.27 133.25 0.97 18.05 16 4 C -0.51 -26.63 9.50 23.09 0.22 -26.41 16 5 H 0.08 4.29 7.46 -2.91 -0.02 4.26 16 6 C 0.04 2.24 5.52 85.29 0.47 2.71 16 7 N -0.82 -43.51 13.65 21.86 0.30 -43.21 16 8 Si 1.15 56.61 25.90 68.60 1.78 58.38 16 9 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 10 H -0.27 -14.02 6.76 99.48 0.67 -13.35 16 11 H -0.29 -14.96 7.11 99.48 0.71 -14.25 16 12 N -0.45 -24.33 7.52 -55.04 -0.41 -24.75 16 13 N -0.22 -11.04 9.30 -56.23 -0.52 -11.57 16 14 C 0.02 0.82 8.04 179.21 1.44 2.26 16 15 S 0.27 8.74 22.18 -56.49 -1.25 7.48 16 16 C 0.26 8.55 7.84 180.45 1.41 9.96 16 17 N -0.47 -16.22 7.15 -196.49 -1.41 -17.62 16 18 C 0.17 3.94 11.30 84.74 0.96 4.90 16 19 C -0.16 -2.93 9.74 22.47 0.22 -2.71 16 20 C 0.08 1.76 6.29 42.59 0.27 2.03 16 21 C 0.54 10.57 3.34 71.24 0.24 10.80 16 22 F -0.17 -3.79 16.89 44.97 0.76 -3.03 16 23 F -0.16 -2.80 17.18 44.97 0.77 -2.03 16 24 F -0.16 -2.94 17.29 44.97 0.78 -2.17 16 25 N -0.48 -14.08 9.83 -184.58 -1.82 -15.90 16 26 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.10 2.46 7.85 -2.38 -0.02 2.44 16 28 H 0.08 2.62 7.48 -2.38 -0.02 2.60 16 29 H 0.29 14.41 8.72 -92.71 -0.81 13.60 16 30 H 0.21 3.65 8.06 -2.91 -0.02 3.62 16 31 H 0.20 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -69.14 306.62 5.94 -63.19 By element: Atomic # 1 Polarization: -11.55 SS G_CDS: 1.15 Total: -10.39 kcal Atomic # 6 Polarization: 18.12 SS G_CDS: 7.59 Total: 25.71 kcal Atomic # 7 Polarization: -131.52 SS G_CDS: -5.63 Total: -137.14 kcal Atomic # 9 Polarization: -9.54 SS G_CDS: 2.31 Total: -7.23 kcal Atomic # 14 Polarization: 56.61 SS G_CDS: 1.78 Total: 58.38 kcal Atomic # 16 Polarization: 8.74 SS G_CDS: -1.25 Total: 7.48 kcal Total: -69.14 5.94 -63.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280172059.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.383 kcal (2) G-P(sol) polarization free energy of solvation -69.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds