Wall clock time and date at job start Tue Mar 31 2020 16:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 116.99980 * 2 1 4 4 C 1.38652 * 120.02551 * 359.97438 * 3 2 1 5 5 C 1.38612 * 119.88907 * 179.97438 * 4 3 2 6 6 O 1.35906 * 120.02775 * 179.97438 * 5 4 3 7 7 S 1.52193 * 113.99680 * 270.02045 * 6 5 4 8 8 O 1.42108 * 104.27395 * 191.06937 * 7 6 5 9 9 O 1.42097 * 104.27930 * 318.92764 * 7 6 5 10 10 C 1.81400 * 104.44995 * 75.00418 * 7 6 5 11 11 C 1.52998 * 109.47253 * 179.97438 * 10 7 6 12 12 C 1.50701 * 109.47207 * 179.97438 * 11 10 7 13 13 H 1.08000 * 119.99896 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99705 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99461 * 180.02562 * 14 12 11 16 16 Si 1.86791 * 120.00501 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.46933 * 89.99779 * 16 14 12 18 18 H 1.48497 * 109.47165 * 209.99954 * 16 14 12 19 19 H 1.48500 * 109.46965 * 330.00133 * 16 14 12 20 20 C 1.38792 * 119.94652 * 0.02562 * 5 4 3 21 21 C 1.38157 * 120.05513 * 359.97438 * 20 5 4 22 22 C 1.38196 * 120.10692 * 0.28192 * 21 20 5 23 23 N 1.48005 * 119.97147 * 179.70391 * 22 21 20 24 24 O 1.21796 * 119.99896 * 359.97438 * 23 22 21 25 25 O 1.21799 * 119.99787 * 179.97438 * 23 22 21 26 26 H 1.08998 * 109.47355 * 60.00386 * 1 2 3 27 27 H 1.08997 * 109.47055 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46983 * 300.00284 * 1 2 3 29 29 H 1.08002 * 120.05843 * 0.02562 * 4 3 2 30 30 H 1.09003 * 109.46610 * 299.99495 * 10 7 6 31 31 H 1.08995 * 109.47372 * 59.99060 * 10 7 6 32 32 H 1.09000 * 109.47169 * 300.00059 * 11 10 7 33 33 H 1.09004 * 109.46868 * 59.99862 * 11 10 7 34 34 H 0.96998 * 119.99910 * 179.97438 * 15 14 12 35 35 H 1.08007 * 119.97428 * 179.97438 * 20 5 4 36 36 H 1.08002 * 119.94400 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3740 -0.0005 5 6 1.9236 3.6076 0.0000 6 8 1.1866 4.7495 -0.0010 7 16 0.8522 5.2690 -1.3919 8 8 0.3274 6.5697 -1.1633 9 8 2.0500 5.0822 -2.1332 10 6 -0.4476 4.1546 -1.9910 11 6 -0.8745 4.5785 -3.3978 12 6 -1.9539 3.6522 -3.8957 13 1 -2.3010 2.8424 -3.2711 14 6 -2.4990 3.8393 -5.1483 15 7 -3.4413 3.0312 -5.5826 16 14 -1.8991 5.2403 -6.2284 17 1 -0.7653 4.7702 -7.0643 18 1 -3.0059 5.6969 -7.1068 19 1 -1.4491 6.3673 -5.3725 20 6 3.3098 3.6756 0.0005 21 6 4.0595 2.5152 0.0011 22 6 3.4316 1.2841 -0.0048 23 7 4.2377 0.0429 -0.0108 24 8 5.4540 0.1067 -0.0111 25 8 3.6847 -1.0423 -0.0156 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.2127 2.3191 -0.0005 30 1 -0.0665 3.1337 -2.0188 31 1 -1.3058 4.2038 -1.3209 32 1 -1.2556 5.5993 -3.3697 33 1 -0.0163 4.5294 -4.0681 34 1 -3.8251 3.1630 -6.4637 35 1 3.8029 4.6366 0.0005 36 1 5.1381 2.5702 0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280491308.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:41 Heat of formation + Delta-G solvation = -134.134015 kcal Electronic energy + Delta-G solvation = -26703.734841 eV Core-core repulsion = 22477.572588 eV Total energy + Delta-G solvation = -4226.162253 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.070 amu Computer time = 3.50 seconds Orbital eigenvalues (eV) -43.40880 -42.54788 -40.93301 -38.62996 -38.42704 -37.56585 -37.43591 -35.98765 -33.62143 -32.83014 -32.00598 -28.71963 -28.04236 -27.59711 -24.46332 -24.20402 -23.28549 -22.01737 -20.72344 -20.05854 -19.89162 -19.39801 -18.95644 -18.68348 -18.53945 -17.79717 -17.32791 -17.02160 -16.68997 -16.38587 -16.11968 -15.66910 -15.42703 -14.89584 -14.85789 -14.45144 -14.34281 -13.88456 -13.79233 -13.53349 -13.43137 -13.16245 -13.11924 -13.00294 -12.84263 -12.68058 -12.40262 -12.30172 -12.23240 -12.22569 -12.00552 -11.74368 -11.37650 -10.89591 -10.84925 -10.01836 -8.37310 -6.43091 -1.70544 -0.97868 -0.38837 0.03673 0.23483 0.75776 1.31861 1.35242 1.42843 1.69097 1.77467 2.28620 2.33094 2.64271 2.96842 2.97680 3.11331 3.22236 3.49207 3.56994 3.72649 3.87639 4.05657 4.17353 4.26467 4.30653 4.46253 4.50097 4.56896 4.71547 4.90031 4.98252 5.01770 5.18144 5.44427 5.70501 6.14073 6.50234 6.63205 7.21724 8.77586 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.013404 B = 0.004099 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.459616 B = 6828.958904 C = 7881.665508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.003 4.003 2 O -0.289 6.289 3 C 0.214 3.786 4 C -0.229 4.229 5 C 0.154 3.846 6 O -0.657 6.657 7 S 2.598 3.402 8 O -0.951 6.951 9 O -0.964 6.964 10 C -0.610 4.610 11 C -0.016 4.016 12 C -0.525 4.525 13 H 0.056 0.944 14 C 0.017 3.983 15 N -0.938 5.938 16 Si 0.918 3.082 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.245 1.245 20 C -0.135 4.135 21 C 0.013 3.987 22 C -0.091 4.091 23 N 0.038 4.962 24 O -0.167 6.167 25 O -0.169 6.169 26 H 0.072 0.928 27 H 0.133 0.867 28 H 0.089 0.911 29 H 0.193 0.807 30 H 0.146 0.854 31 H 0.157 0.843 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.269 0.731 35 H 0.188 0.812 36 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.014 -1.126 14.700 19.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 O -0.199 6.199 3 C 0.163 3.837 4 C -0.250 4.250 5 C 0.112 3.888 6 O -0.615 6.615 7 S 2.697 3.303 8 O -0.949 6.949 9 O -0.962 6.962 10 C -0.740 4.740 11 C -0.055 4.055 12 C -0.564 4.564 13 H 0.075 0.925 14 C -0.182 4.182 15 N -0.577 5.577 16 Si 0.741 3.259 17 H -0.188 1.188 18 H -0.203 1.203 19 H -0.169 1.169 20 C -0.155 4.155 21 C -0.006 4.006 22 C -0.176 4.176 23 N 0.553 4.447 24 O -0.381 6.381 25 O -0.382 6.382 26 H 0.090 0.910 27 H 0.151 0.849 28 H 0.107 0.893 29 H 0.210 0.790 30 H 0.164 0.836 31 H 0.175 0.825 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.205 0.795 36 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 11.977 -0.122 14.788 19.030 hybrid contribution -0.899 -0.175 -0.930 1.305 sum 11.078 -0.297 13.858 17.744 Atomic orbital electron populations 1.23822 0.74489 1.07575 1.03704 1.86452 1.24899 1.23333 1.85206 1.18351 0.89273 0.86447 0.89606 1.21671 1.03857 0.89067 1.10417 1.18309 0.90452 0.81554 0.98489 1.85769 1.72757 1.45405 1.57598 1.05370 0.76470 0.75923 0.72514 1.93596 1.81746 1.36886 1.82715 1.93609 1.44371 1.86553 1.71679 1.30572 1.18080 1.16406 1.08916 1.19379 0.97699 0.97983 0.90402 1.21123 1.19660 1.14198 1.01420 0.92549 1.25800 0.94704 0.98413 0.99298 1.69989 1.28069 1.39627 1.20061 0.86122 0.78999 0.80925 0.79813 1.18769 1.20343 1.16888 1.21545 0.90764 1.01429 1.01811 1.21116 1.03876 0.86602 0.88962 1.20912 0.88534 0.86075 1.22120 1.43421 1.01155 1.02652 0.97453 1.94504 0.95809 1.93979 1.53796 1.94613 1.74274 1.15413 1.53924 0.90982 0.84904 0.89297 0.79037 0.83628 0.82495 0.94422 0.94564 0.92184 0.79503 0.78106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.04 9.81 113.37 1.11 1.08 16 2 O -0.29 -6.15 8.50 -71.21 -0.61 -6.75 16 3 C 0.21 4.52 6.67 22.49 0.15 4.67 16 4 C -0.23 -4.26 7.44 22.46 0.17 -4.09 16 5 C 0.15 3.16 4.80 22.49 0.11 3.26 16 6 O -0.66 -14.84 10.05 -61.59 -0.62 -15.46 16 7 S 2.60 74.07 5.17 -56.49 -0.29 73.78 16 8 O -0.95 -33.06 18.09 -118.57 -2.15 -35.21 16 9 O -0.96 -29.85 16.26 -118.57 -1.93 -31.78 16 10 C -0.61 -18.24 5.40 71.98 0.39 -17.86 16 11 C -0.02 -0.65 4.05 29.85 0.12 -0.53 16 12 C -0.53 -27.00 9.66 25.60 0.25 -26.75 16 13 H 0.06 3.05 7.99 -2.91 -0.02 3.03 16 14 C 0.02 0.92 5.47 84.66 0.46 1.38 16 15 N -0.94 -54.76 13.96 21.45 0.30 -54.46 16 16 Si 0.92 41.13 27.47 68.60 1.88 43.01 16 17 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 18 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 19 H -0.25 -10.25 6.54 99.48 0.65 -9.60 16 20 C -0.13 -2.32 9.04 22.38 0.20 -2.12 16 21 C 0.01 0.21 9.54 22.24 0.21 0.43 16 22 C -0.09 -1.99 6.87 36.49 0.25 -1.74 16 23 N 0.04 0.98 4.45 -46.20 -0.21 0.78 16 24 O -0.17 -4.28 18.44 18.89 0.35 -3.94 16 25 O -0.17 -4.97 17.23 25.62 0.44 -4.53 16 26 H 0.07 1.05 7.66 -2.39 -0.02 1.03 16 27 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.09 0.83 7.66 -2.39 -0.02 0.81 16 29 H 0.19 2.59 5.73 -2.91 -0.02 2.58 16 30 H 0.15 3.73 6.60 -2.39 -0.02 3.71 16 31 H 0.16 3.99 8.14 -2.39 -0.02 3.97 16 32 H 0.04 1.55 7.20 -2.39 -0.02 1.54 16 33 H 0.04 1.46 7.57 -2.38 -0.02 1.45 16 34 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 35 H 0.19 2.35 8.06 -2.91 -0.02 2.32 16 36 H 0.20 2.10 7.60 -2.91 -0.02 2.08 16 Total: -1.00 -72.43 329.80 1.68 -70.75 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 1.08 Total: 6.09 kcal Atomic # 6 Polarization: -45.70 SS G_CDS: 3.42 Total: -42.28 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.09 Total: -53.68 kcal Atomic # 8 Polarization: -93.15 SS G_CDS: -4.51 Total: -97.66 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 1.88 Total: 43.01 kcal Atomic # 16 Polarization: 74.07 SS G_CDS: -0.29 Total: 73.78 kcal Total: -72.43 1.68 -70.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280491308.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.389 kcal (2) G-P(sol) polarization free energy of solvation -72.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.51 seconds