Wall clock time and date at job start Tue Mar 31 2020 15:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42096 * 110.54616 * 2 1 4 4 O 1.42108 * 110.53967 * 223.24838 * 2 1 3 5 5 C 1.76204 * 104.44921 * 111.62875 * 2 1 3 6 6 C 1.38286 * 119.95797 * 90.00084 * 5 2 1 7 7 C 1.38260 * 120.15084 * 179.97438 * 6 5 2 8 8 C 1.38219 * 120.05728 * 359.97438 * 7 6 5 9 9 Cl 1.73602 * 120.04592 * 179.97438 * 8 7 6 10 10 C 1.38956 * 119.90762 * 0.02562 * 8 7 6 11 11 N 1.39978 * 120.07491 * 180.02562 * 10 8 7 12 12 C 1.34775 * 120.00162 * 214.96291 * 11 10 8 13 13 O 1.21290 * 119.99716 * 355.51515 * 12 11 10 14 14 C 1.50706 * 120.00255 * 175.52378 * 12 11 10 15 15 C 1.52994 * 109.47075 * 179.97438 * 14 12 11 16 16 C 1.50696 * 109.47073 * 179.97438 * 15 14 12 17 17 H 1.08006 * 120.00005 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00304 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99831 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00059 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47142 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46917 * 120.00359 * 20 18 16 23 23 H 1.48503 * 109.47080 * 240.00074 * 20 18 16 24 24 C 1.38121 * 119.95019 * 270.25128 * 5 2 1 25 25 H 1.08998 * 109.47010 * 308.37447 * 1 2 3 26 26 H 1.08997 * 109.47486 * 68.37441 * 1 2 3 27 27 H 1.09001 * 109.47159 * 188.37859 * 1 2 3 28 28 H 1.08002 * 119.92438 * 359.94860 * 6 5 2 29 29 H 1.08003 * 119.96892 * 179.97438 * 7 6 5 30 30 H 0.97001 * 120.00229 * 34.95345 * 11 10 8 31 31 H 1.09004 * 109.46357 * 299.99566 * 14 12 11 32 32 H 1.08993 * 109.47447 * 59.99139 * 14 12 11 33 33 H 1.09004 * 109.47382 * 299.99193 * 15 14 12 34 34 H 1.09001 * 109.47327 * 59.99684 * 15 14 12 35 35 H 0.97000 * 120.00089 * 180.02562 * 19 18 16 36 36 H 1.08004 * 120.02757 * 0.04493 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9118 5 6 2.2536 -0.6289 1.5862 6 6 2.4260 -1.9892 1.7662 7 6 2.7715 -2.4869 3.0089 8 6 2.9462 -1.6254 4.0756 9 17 3.3794 -2.2508 5.6360 10 6 2.7737 -0.2582 3.8974 11 7 2.9503 0.6175 4.9751 12 6 2.1807 1.7187 5.0817 13 8 1.3916 1.9944 4.2029 14 6 2.3008 2.6076 6.2928 15 6 1.3244 3.7785 6.1648 16 6 1.4440 4.6670 7.3761 17 1 2.1466 4.4213 8.1588 18 6 0.6574 5.7942 7.4848 19 7 -0.1978 6.0936 6.5315 20 14 0.8052 6.8951 8.9866 21 1 1.8312 6.3420 9.9068 22 1 1.2063 8.2604 8.5619 23 1 -0.5040 6.9585 9.6847 24 6 2.4206 0.2370 2.6492 25 1 -0.3633 0.6380 0.8056 26 1 -0.3634 0.3787 -0.9553 27 1 -0.3633 -1.0167 0.1497 28 1 2.2899 -2.6642 0.9342 29 1 2.9049 -3.5498 3.1463 30 1 3.6265 0.4316 5.6453 31 1 2.0653 2.0339 7.1892 32 1 3.3190 2.9900 6.3633 33 1 1.5603 4.3521 5.2684 34 1 0.3060 3.3964 6.0941 35 1 -0.7509 6.8867 6.6078 36 1 2.2811 1.2987 2.5086 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291076416.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:32 Heat of formation + Delta-G solvation = -88.992551 kcal Electronic energy + Delta-G solvation = -23244.262661 eV Core-core repulsion = 19460.767054 eV Total energy + Delta-G solvation = -3783.495608 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.63633 -38.69693 -37.26895 -36.88828 -36.11059 -34.85854 -33.60103 -31.46862 -31.30396 -29.80555 -29.62654 -25.92320 -23.84392 -23.36501 -21.62964 -19.95219 -19.36720 -18.35307 -17.24786 -16.83468 -16.41373 -16.34665 -16.19999 -15.81126 -15.48483 -14.78862 -14.49539 -14.17343 -13.93248 -13.61432 -13.50915 -13.40312 -13.03935 -12.62926 -12.49276 -12.26787 -12.24593 -12.11137 -12.03403 -11.37535 -11.34134 -11.26826 -11.02824 -10.99688 -10.64469 -10.55807 -10.08738 -9.82082 -9.49476 -9.33435 -9.15676 -8.44439 -8.37423 -6.02855 -4.07562 -0.18023 0.36294 0.90701 1.65139 2.60520 2.73210 2.98577 3.17560 3.28995 3.36649 3.39529 3.71055 3.92815 4.35287 4.42026 4.55912 4.65551 4.70119 4.97622 5.01371 5.14812 5.32777 5.45345 5.47588 5.53883 5.68543 5.78819 6.02950 6.04196 6.11210 6.58661 6.70632 7.39197 7.65866 7.73927 7.97406 8.23324 8.38696 8.99980 9.56654 11.08056 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.012927 B = 0.003280 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.541355 B = 8534.490226 C =10394.023853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 2.502 3.498 3 O -0.928 6.928 4 O -0.940 6.940 5 C -0.640 4.640 6 C -0.038 4.038 7 C -0.113 4.113 8 C -0.022 4.022 9 Cl -0.053 7.053 10 C 0.151 3.849 11 N -0.683 5.683 12 C 0.513 3.487 13 O -0.511 6.511 14 C -0.128 4.128 15 C 0.036 3.964 16 C -0.529 4.529 17 H 0.057 0.943 18 C 0.059 3.941 19 N -0.888 5.888 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.284 1.284 24 C -0.018 4.018 25 H 0.139 0.861 26 H 0.133 0.867 27 H 0.131 0.869 28 H 0.150 0.850 29 H 0.145 0.855 30 H 0.414 0.586 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.027 0.973 34 H 0.025 0.975 35 H 0.261 0.739 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.771 -19.998 -9.568 22.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.799 4.799 2 S 2.681 3.319 3 O -0.926 6.926 4 O -0.937 6.937 5 C -0.727 4.727 6 C -0.058 4.058 7 C -0.133 4.133 8 C -0.052 4.052 9 Cl -0.024 7.024 10 C 0.053 3.947 11 N -0.330 5.330 12 C 0.303 3.697 13 O -0.384 6.384 14 C -0.168 4.168 15 C -0.002 4.002 16 C -0.567 4.567 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.527 5.527 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.039 4.039 25 H 0.157 0.843 26 H 0.151 0.849 27 H 0.150 0.850 28 H 0.168 0.832 29 H 0.163 0.837 30 H 0.251 0.749 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.045 0.955 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 4.644 -19.378 -10.657 22.597 hybrid contribution -0.046 0.081 2.162 2.164 sum 4.598 -19.296 -8.495 21.579 Atomic orbital electron populations 1.30199 1.25079 1.12210 1.12364 1.05190 0.78122 0.74695 0.73922 1.93632 1.77270 1.36042 1.85619 1.93577 1.77653 1.61904 1.60567 1.30674 1.17216 1.02691 1.22083 1.20816 0.94553 0.93215 0.97212 1.20975 1.01078 0.99942 0.91260 1.21141 1.03798 0.91969 0.88295 1.98391 1.91098 1.86750 1.26173 1.17632 1.00552 0.87650 0.88841 1.44045 1.39197 1.24304 1.25433 1.21999 0.78358 0.79617 0.89678 1.90651 1.36064 1.70550 1.41160 1.21947 1.04231 0.97782 0.92815 1.18946 0.93477 0.90089 0.97667 1.21209 1.21976 1.08505 1.05007 0.92468 1.25015 0.95221 0.97716 0.96336 1.69996 1.23654 1.26331 1.32697 0.86525 0.77887 0.80588 0.82896 1.19733 1.20955 1.20996 1.21214 0.92512 1.01702 0.88451 0.84289 0.84862 0.85010 0.83204 0.83726 0.74939 0.89534 0.89495 0.95503 0.95656 0.92920 0.81211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -4.27 10.80 101.05 1.09 -3.18 16 2 S 2.50 25.26 5.80 -107.50 -0.62 24.63 16 3 O -0.93 -13.37 17.13 -57.54 -0.99 -14.35 16 4 O -0.94 -11.01 17.12 -57.54 -0.99 -11.99 16 5 C -0.64 -7.20 5.65 -39.61 -0.22 -7.42 16 6 C -0.04 -0.35 9.47 -39.56 -0.37 -0.73 16 7 C -0.11 -1.04 9.82 -39.58 -0.39 -1.43 16 8 C -0.02 -0.25 6.34 -39.32 -0.25 -0.50 16 9 Cl -0.05 -0.53 27.96 -51.86 -1.45 -1.98 16 10 C 0.15 2.05 6.30 -83.65 -0.53 1.52 16 11 N -0.68 -9.46 5.05 -9.83 -0.05 -9.51 16 12 C 0.51 9.12 7.68 -10.98 -0.08 9.04 16 13 O -0.51 -10.75 13.40 5.55 0.07 -10.67 16 14 C -0.13 -2.41 5.64 -27.88 -0.16 -2.57 16 15 C 0.04 0.91 4.26 -27.89 -0.12 0.79 16 16 C -0.53 -14.48 9.11 -34.44 -0.31 -14.80 16 17 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 20 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C -0.02 -0.25 8.12 -39.40 -0.32 -0.57 16 25 H 0.14 0.99 8.14 -51.92 -0.42 0.57 16 26 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.13 0.57 8.14 -51.92 -0.42 0.15 16 28 H 0.15 0.99 7.56 -52.49 -0.40 0.59 16 29 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 30 H 0.41 4.57 8.08 -40.82 -0.33 4.24 16 31 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 32 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 33 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.03 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.17 2.75 5.72 -52.48 -0.30 2.45 16 LS Contribution 341.63 15.07 5.15 5.15 Total: -1.00 -36.78 341.63 -8.87 -45.64 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -3.95 Total: 1.10 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -1.76 Total: -18.27 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.69 Total: -35.44 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -1.90 Total: -37.02 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 25.26 SS G_CDS: -0.62 Total: 24.63 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.45 Total: -1.98 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.78 -8.87 -45.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291076416.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.350 kcal (2) G-P(sol) polarization free energy of solvation -36.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds