Wall clock time and date at job start Tue Mar 31 2020 15:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42096 * 110.54616 * 2 1 4 4 O 1.42108 * 110.53967 * 223.24838 * 2 1 3 5 5 C 1.76204 * 104.44921 * 111.62875 * 2 1 3 6 6 C 1.38286 * 119.95797 * 90.00084 * 5 2 1 7 7 C 1.38260 * 120.15084 * 179.97438 * 6 5 2 8 8 C 1.38219 * 120.05728 * 359.97438 * 7 6 5 9 9 Cl 1.73602 * 120.04592 * 179.97438 * 8 7 6 10 10 C 1.38956 * 119.90762 * 0.02562 * 8 7 6 11 11 N 1.39978 * 120.07491 * 180.02562 * 10 8 7 12 12 C 1.34775 * 120.00162 * 214.96291 * 11 10 8 13 13 O 1.21290 * 119.99716 * 355.51515 * 12 11 10 14 14 C 1.50706 * 120.00255 * 175.52378 * 12 11 10 15 15 C 1.52994 * 109.47075 * 179.97438 * 14 12 11 16 16 C 1.50696 * 109.47073 * 179.97438 * 15 14 12 17 17 H 1.08006 * 120.00005 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00304 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99831 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00059 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47142 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46917 * 120.00359 * 20 18 16 23 23 H 1.48503 * 109.47080 * 240.00074 * 20 18 16 24 24 C 1.38121 * 119.95019 * 270.25128 * 5 2 1 25 25 H 1.08998 * 109.47010 * 308.37447 * 1 2 3 26 26 H 1.08997 * 109.47486 * 68.37441 * 1 2 3 27 27 H 1.09001 * 109.47159 * 188.37859 * 1 2 3 28 28 H 1.08002 * 119.92438 * 359.94860 * 6 5 2 29 29 H 1.08003 * 119.96892 * 179.97438 * 7 6 5 30 30 H 0.97001 * 120.00229 * 34.95345 * 11 10 8 31 31 H 1.09004 * 109.46357 * 299.99566 * 14 12 11 32 32 H 1.08993 * 109.47447 * 59.99139 * 14 12 11 33 33 H 1.09004 * 109.47382 * 299.99193 * 15 14 12 34 34 H 1.09001 * 109.47327 * 59.99684 * 15 14 12 35 35 H 0.97000 * 120.00089 * 180.02562 * 19 18 16 36 36 H 1.08004 * 120.02757 * 0.04493 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9118 5 6 2.2536 -0.6289 1.5862 6 6 2.4260 -1.9892 1.7662 7 6 2.7715 -2.4869 3.0089 8 6 2.9462 -1.6254 4.0756 9 17 3.3794 -2.2508 5.6360 10 6 2.7737 -0.2582 3.8974 11 7 2.9503 0.6175 4.9751 12 6 2.1807 1.7187 5.0817 13 8 1.3916 1.9944 4.2029 14 6 2.3008 2.6076 6.2928 15 6 1.3244 3.7785 6.1648 16 6 1.4440 4.6670 7.3761 17 1 2.1466 4.4213 8.1588 18 6 0.6574 5.7942 7.4848 19 7 -0.1978 6.0936 6.5315 20 14 0.8052 6.8951 8.9866 21 1 1.8312 6.3420 9.9068 22 1 1.2063 8.2604 8.5619 23 1 -0.5040 6.9585 9.6847 24 6 2.4206 0.2370 2.6492 25 1 -0.3633 0.6380 0.8056 26 1 -0.3634 0.3787 -0.9553 27 1 -0.3633 -1.0167 0.1497 28 1 2.2899 -2.6642 0.9342 29 1 2.9049 -3.5498 3.1463 30 1 3.6265 0.4316 5.6453 31 1 2.0653 2.0339 7.1892 32 1 3.3190 2.9900 6.3633 33 1 1.5603 4.3521 5.2684 34 1 0.3060 3.3964 6.0941 35 1 -0.7509 6.8867 6.6078 36 1 2.2811 1.2987 2.5086 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291076416.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:30 Heat of formation + Delta-G solvation = -116.496329 kcal Electronic energy + Delta-G solvation = -23245.455315 eV Core-core repulsion = 19460.767054 eV Total energy + Delta-G solvation = -3784.688261 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.78730 -39.83843 -38.18656 -37.72097 -37.03508 -36.07783 -35.58809 -33.17448 -32.27303 -30.92818 -30.28636 -27.76862 -24.94894 -24.49174 -23.15997 -21.36591 -20.30580 -19.28746 -18.88801 -17.85247 -17.66635 -17.31129 -17.17611 -17.08555 -16.62916 -16.45158 -15.93659 -15.30313 -14.92764 -14.83634 -14.24320 -14.21763 -14.17608 -13.98952 -13.83850 -13.45185 -13.22963 -13.19414 -13.04057 -12.89240 -12.85406 -12.46902 -12.29267 -12.16618 -11.96394 -11.84518 -11.67901 -11.61863 -11.29390 -10.88452 -10.57368 -10.25971 -9.46078 -8.18590 -6.31859 -0.95071 -0.52244 -0.01265 0.79346 1.42782 1.43329 1.44408 1.56599 1.81319 1.85407 2.19788 2.42931 2.93669 3.12567 3.15284 3.51432 3.75119 3.91904 4.02157 4.07329 4.09927 4.29545 4.42437 4.48969 4.53272 4.66037 4.82127 4.91141 4.94184 5.01560 5.14521 5.49393 5.57932 5.61198 5.84239 6.16221 6.21880 6.85187 7.01777 7.38316 8.94074 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.012927 B = 0.003280 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.541355 B = 8534.490226 C =10394.023853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.629 4.629 2 S 2.509 3.491 3 O -0.983 6.983 4 O -0.956 6.956 5 C -0.642 4.642 6 C -0.027 4.027 7 C -0.103 4.103 8 C -0.021 4.021 9 Cl -0.039 7.039 10 C 0.123 3.877 11 N -0.665 5.665 12 C 0.515 3.485 13 O -0.554 6.554 14 C -0.117 4.117 15 C 0.041 3.959 16 C -0.542 4.542 17 H 0.076 0.924 18 C -0.004 4.004 19 N -0.935 5.935 20 Si 0.971 3.029 21 H -0.254 1.254 22 H -0.282 1.282 23 H -0.281 1.281 24 C -0.045 4.045 25 H 0.134 0.866 26 H 0.157 0.843 27 H 0.165 0.835 28 H 0.185 0.815 29 H 0.182 0.818 30 H 0.427 0.573 31 H 0.111 0.889 32 H 0.110 0.890 33 H -0.013 1.013 34 H -0.012 1.012 35 H 0.263 0.737 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.300 -22.666 -8.592 24.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.782 4.782 2 S 2.691 3.309 3 O -0.981 6.981 4 O -0.954 6.954 5 C -0.728 4.728 6 C -0.047 4.047 7 C -0.123 4.123 8 C -0.051 4.051 9 Cl -0.010 7.010 10 C 0.026 3.974 11 N -0.313 5.313 12 C 0.306 3.694 13 O -0.430 6.430 14 C -0.157 4.157 15 C 0.003 3.997 16 C -0.580 4.580 17 H 0.094 0.906 18 C -0.202 4.202 19 N -0.575 5.575 20 Si 0.795 3.205 21 H -0.177 1.177 22 H -0.208 1.208 23 H -0.206 1.206 24 C -0.066 4.066 25 H 0.153 0.847 26 H 0.175 0.825 27 H 0.183 0.817 28 H 0.202 0.798 29 H 0.200 0.800 30 H 0.267 0.733 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.005 0.995 34 H 0.007 0.993 35 H 0.071 0.929 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.260 -22.098 -9.661 24.684 hybrid contribution -0.246 0.772 1.771 1.948 sum 5.014 -21.326 -7.890 23.285 Atomic orbital electron populations 1.30058 1.19989 1.14537 1.13643 1.04849 0.79829 0.73123 0.73101 1.93568 1.79688 1.38617 1.86183 1.93544 1.79323 1.61731 1.60770 1.30745 1.17193 1.03451 1.21446 1.21311 0.92385 0.92576 0.98387 1.21459 0.99066 1.01451 0.90311 1.21248 1.03150 0.91105 0.89547 1.98398 1.90908 1.86330 1.25382 1.17752 1.02674 0.88635 0.88343 1.43610 1.38545 1.23198 1.25929 1.21675 0.78440 0.80480 0.88811 1.90648 1.38165 1.71838 1.42366 1.21694 1.03457 0.96091 0.94445 1.18717 0.93270 0.92011 0.95678 1.21713 1.21926 1.08698 1.05657 0.90622 1.26076 0.94778 0.99639 0.99711 1.70165 1.24933 1.27159 1.35276 0.85316 0.78304 0.78087 0.78793 1.17714 1.20777 1.20649 1.21011 0.94786 1.00825 0.90024 0.84731 0.82484 0.81688 0.79804 0.80040 0.73334 0.87066 0.87179 0.99497 0.99347 0.92864 0.84451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -7.15 10.80 113.37 1.22 -5.93 16 2 S 2.51 50.58 5.80 -56.49 -0.33 50.25 16 3 O -0.98 -30.45 17.13 -127.65 -2.19 -32.64 16 4 O -0.96 -21.36 17.12 -127.65 -2.19 -23.55 16 5 C -0.64 -14.17 5.65 22.25 0.13 -14.05 16 6 C -0.03 -0.43 9.47 22.29 0.21 -0.22 16 7 C -0.10 -1.57 9.82 22.27 0.22 -1.35 16 8 C -0.02 -0.43 6.34 22.44 0.14 -0.29 16 9 Cl -0.04 -0.69 27.96 -2.72 -0.08 -0.76 16 10 C 0.12 3.32 6.30 38.16 0.24 3.56 16 11 N -0.67 -18.50 5.05 -303.41 -1.53 -20.03 16 12 C 0.52 19.04 7.68 87.66 0.67 19.71 16 13 O -0.55 -25.02 13.40 -3.06 -0.04 -25.06 16 14 C -0.12 -4.47 5.64 29.85 0.17 -4.30 16 15 C 0.04 2.19 4.26 29.84 0.13 2.32 16 16 C -0.54 -30.05 9.11 25.60 0.23 -29.82 16 17 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 18 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 19 N -0.94 -58.22 13.29 21.45 0.28 -57.93 16 20 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 21 H -0.25 -10.53 7.11 99.48 0.71 -9.83 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 C -0.05 -1.33 8.12 22.39 0.18 -1.15 16 25 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.16 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.16 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.18 1.65 7.56 -2.91 -0.02 1.63 16 29 H 0.18 1.43 8.06 -2.91 -0.02 1.40 16 30 H 0.43 9.05 8.08 -92.71 -0.75 8.30 16 31 H 0.11 3.67 8.14 -2.38 -0.02 3.65 16 32 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 33 H -0.01 -0.82 8.10 -2.38 -0.02 -0.83 16 34 H -0.01 -0.72 8.10 -2.39 -0.02 -0.74 16 35 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 36 H 0.14 4.95 5.72 -2.91 -0.02 4.93 16 Total: -1.00 -84.95 341.63 0.35 -84.60 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.38 Total: 10.72 kcal Atomic # 6 Polarization: -35.30 SS G_CDS: 4.01 Total: -31.30 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -1.25 Total: -77.97 kcal Atomic # 8 Polarization: -76.83 SS G_CDS: -4.41 Total: -81.24 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 50.58 SS G_CDS: -0.33 Total: 50.25 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.76 kcal Total: -84.95 0.35 -84.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291076416.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.898 kcal (2) G-P(sol) polarization free energy of solvation -84.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds