Wall clock time and date at job start Tue Mar 31 2020 17:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46892 * 109.47341 * 2 1 4 4 C 1.46899 * 111.00354 * 289.73863 * 3 2 1 5 5 C 1.50702 * 109.46906 * 296.81551 * 4 3 2 6 6 H 1.07999 * 119.99778 * 354.90471 * 5 4 3 7 7 C 1.37870 * 120.00105 * 174.90908 * 5 4 3 8 8 N 1.31517 * 120.00309 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 120.00110 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47049 * 89.99978 * 9 7 5 11 11 H 1.48496 * 109.47029 * 210.00259 * 9 7 5 12 12 H 1.48498 * 109.46616 * 330.00130 * 9 7 5 13 13 C 1.38545 * 110.99931 * 53.69270 * 3 2 1 14 14 N 1.33144 * 120.56327 * 236.04708 * 13 3 2 15 15 C 1.31887 * 119.74503 * 179.97438 * 14 13 3 16 16 Cl 1.73602 * 118.76751 * 179.74555 * 15 14 13 17 17 N 1.31368 * 122.46530 * 359.76811 * 15 14 13 18 18 C 1.34063 * 121.82267 * 359.97438 * 17 15 14 19 19 C 1.37941 * 116.80215 * 0.44722 * 18 17 15 20 20 S 1.77332 * 107.96694 * 179.00790 * 19 18 17 21 21 O 1.42106 * 105.49634 * 100.54251 * 20 19 18 22 22 O 1.42088 * 105.50171 * 231.00581 * 20 19 18 23 23 C 1.83591 * 97.18394 * 345.74887 * 20 19 18 24 24 C 1.50703 * 127.31485 * 180.98369 * 18 17 15 25 25 H 1.09002 * 109.46999 * 64.88738 * 1 2 3 26 26 H 1.09000 * 109.47164 * 184.88896 * 1 2 3 27 27 H 1.09000 * 109.46979 * 304.88727 * 1 2 3 28 28 H 1.09001 * 109.47251 * 239.99769 * 2 1 3 29 29 H 1.09005 * 109.46915 * 120.00300 * 2 1 3 30 30 H 1.08998 * 109.47232 * 56.80807 * 4 3 2 31 31 H 1.08994 * 109.47648 * 176.81543 * 4 3 2 32 32 H 0.96997 * 120.00619 * 180.02562 * 8 7 5 33 33 H 1.09001 * 111.20930 * 266.02726 * 23 20 19 34 34 H 1.09001 * 111.24397 * 141.67953 * 23 20 19 35 35 H 1.09008 * 109.22733 * 320.54463 * 24 18 17 36 36 H 1.08997 * 109.22894 * 79.93684 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7586 2.0357 -1.2908 5 6 2.5219 1.3220 -2.3767 6 1 3.2027 0.5231 -2.1224 7 6 2.3513 1.6891 -3.6946 8 7 3.0171 1.0660 -4.6423 9 14 1.1733 3.0706 -4.1345 10 1 1.9028 4.3641 -4.1276 11 1 0.6086 2.8279 -5.4862 12 1 0.0723 3.1179 -3.1391 13 6 1.4632 2.1083 1.0423 14 7 0.7961 3.2356 0.8037 15 6 0.2724 3.9112 1.8080 16 17 -0.5865 5.3811 1.4685 17 7 0.3767 3.5137 3.0558 18 6 1.0260 2.3886 3.3873 19 6 1.5905 1.6689 2.3548 20 16 2.4057 0.2575 3.0534 21 8 1.5165 -0.8326 2.8523 22 8 3.7189 0.2703 2.5110 23 6 2.3927 0.8257 4.7991 24 6 1.2028 1.8086 4.7670 25 1 -0.3633 0.4361 -0.9305 26 1 -0.3633 -1.0239 0.0876 27 1 -0.3633 0.5878 0.8430 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.6916 1.9941 -1.5094 31 1 2.0797 3.0762 -1.2447 32 1 2.8973 1.3244 -5.5695 33 1 3.3204 1.3379 5.0540 34 1 2.2020 -0.0019 5.4824 35 1 1.3855 2.6167 5.4754 36 1 0.2939 1.2795 5.0531 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000311912727.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:47 Heat of formation + Delta-G solvation = -19.885993 kcal Electronic energy + Delta-G solvation = -25119.675242 eV Core-core repulsion = 21371.469070 eV Total energy + Delta-G solvation = -3748.206171 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.69809 -39.70388 -38.32132 -38.19215 -37.04004 -36.58718 -34.95223 -33.88353 -32.05574 -31.65639 -29.33035 -26.72595 -25.95052 -24.66411 -23.84408 -21.92926 -20.32189 -19.56023 -19.16363 -18.47749 -18.29925 -17.59285 -17.10423 -16.86931 -16.61978 -16.31811 -16.01611 -15.37059 -15.24233 -14.71950 -14.64398 -14.34468 -14.10639 -13.90756 -13.68253 -13.45393 -13.21472 -13.11352 -13.07659 -12.92513 -12.82086 -12.70922 -12.55695 -12.17312 -12.08958 -11.90531 -11.73052 -11.55922 -11.46670 -11.11042 -10.88094 -10.77168 -9.77963 -8.38028 -6.44208 -1.05113 -0.88688 -0.35503 0.03592 1.29439 1.30441 1.42375 1.51969 1.96237 2.21365 2.26428 2.39472 2.57858 2.94660 3.07181 3.23802 3.34605 3.54766 3.58183 3.81943 3.94754 4.05218 4.18763 4.33921 4.54178 4.58642 4.60718 4.69510 4.74435 4.86682 4.89803 5.03236 5.16068 5.29137 5.56722 5.79579 6.27215 6.47950 6.60961 7.19015 8.77353 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.012155 B = 0.005994 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.060111 B = 4669.925799 C = 6428.657176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.049 3.951 3 N -0.473 5.473 4 C 0.183 3.817 5 C -0.532 4.532 6 H 0.048 0.952 7 C 0.027 3.973 8 N -0.934 5.934 9 Si 0.934 3.066 10 H -0.267 1.267 11 H -0.273 1.273 12 H -0.252 1.252 13 C 0.475 3.525 14 N -0.578 5.578 15 C 0.422 3.578 16 Cl 0.043 6.957 17 N -0.541 5.541 18 C 0.268 3.732 19 C -0.804 4.804 20 S 2.449 3.551 21 O -0.943 6.943 22 O -0.961 6.961 23 C -0.512 4.512 24 C -0.083 4.083 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.047 0.953 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.021 0.979 31 H 0.032 0.968 32 H 0.271 0.729 33 H 0.183 0.817 34 H 0.211 0.789 35 H 0.165 0.835 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.191 1.891 25.759 26.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.075 4.075 3 N -0.185 5.185 4 C 0.057 3.943 5 C -0.570 4.570 6 H 0.066 0.934 7 C -0.173 4.173 8 N -0.573 5.573 9 Si 0.757 3.243 10 H -0.192 1.192 11 H -0.198 1.198 12 H -0.176 1.176 13 C 0.234 3.766 14 N -0.304 5.304 15 C 0.126 3.874 16 Cl 0.071 6.929 17 N -0.263 5.263 18 C 0.123 3.877 19 C -0.894 4.894 20 S 2.629 3.371 21 O -0.940 6.940 22 O -0.958 6.958 23 C -0.648 4.648 24 C -0.121 4.121 25 H 0.073 0.927 26 H 0.116 0.884 27 H 0.066 0.934 28 H 0.116 0.884 29 H 0.099 0.901 30 H 0.039 0.961 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.201 0.799 34 H 0.228 0.772 35 H 0.183 0.817 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.856 1.963 24.721 25.729 hybrid contribution -0.705 1.077 -1.242 1.789 sum -7.561 3.040 23.479 24.853 Atomic orbital electron populations 1.22292 0.94725 1.04392 1.01284 1.22539 0.95523 0.84839 1.04585 1.58760 1.49792 1.04848 1.05123 1.19975 0.96066 0.94638 0.83575 1.21106 1.25519 1.19584 0.90805 0.93362 1.25604 0.97193 0.98608 0.95864 1.69999 1.43220 1.43009 1.01046 0.85910 0.80235 0.79778 0.78376 1.19233 1.19817 1.17627 1.19135 0.80020 0.87204 0.90212 1.68472 1.14991 1.10854 1.36066 1.22996 0.89340 0.89884 0.85177 1.98437 1.72451 1.27316 1.94718 1.67399 1.22834 1.17211 1.18829 1.22829 0.82956 0.85551 0.96334 1.31650 1.27062 1.29804 1.00861 1.07563 0.73847 0.73841 0.81857 1.93600 1.65340 1.49191 1.85821 1.93611 1.37830 1.85926 1.78396 1.30378 1.07783 1.11134 1.15505 1.21078 1.00801 1.01514 0.88660 0.92747 0.88431 0.93354 0.88420 0.90150 0.96085 0.94972 0.91963 0.79921 0.77157 0.81701 0.81980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.19 9.35 71.98 0.67 -5.52 16 2 C 0.05 2.08 5.55 86.31 0.48 2.56 16 3 N -0.47 -21.97 4.77 -706.15 -3.37 -25.34 16 4 C 0.18 9.43 2.90 85.56 0.25 9.67 16 5 C -0.53 -31.51 8.78 25.60 0.22 -31.28 16 6 H 0.05 3.14 7.43 -2.91 -0.02 3.12 16 7 C 0.03 1.59 5.47 84.65 0.46 2.05 16 8 N -0.93 -58.24 13.96 21.45 0.30 -57.94 16 9 Si 0.93 45.28 27.57 68.60 1.89 47.17 16 10 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 11 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.25 -11.79 6.40 99.48 0.64 -11.15 16 13 C 0.48 19.12 4.75 132.96 0.63 19.75 16 14 N -0.58 -23.15 8.86 -189.07 -1.68 -24.83 16 15 C 0.42 13.96 8.14 180.98 1.47 15.43 16 16 Cl 0.04 1.19 29.25 -2.72 -0.08 1.11 16 17 N -0.54 -14.78 10.38 -178.64 -1.85 -16.63 16 18 C 0.27 6.02 7.13 42.15 0.30 6.32 16 19 C -0.80 -24.59 5.37 22.38 0.12 -24.47 16 20 S 2.45 58.36 4.70 -56.49 -0.27 58.09 16 21 O -0.94 -25.78 16.14 -127.82 -2.06 -27.84 16 22 O -0.96 -32.45 17.91 -127.82 -2.29 -34.74 16 23 C -0.51 -2.50 7.67 72.45 0.56 -1.94 16 24 C -0.08 -0.58 6.30 30.31 0.19 -0.39 16 25 H 0.05 2.13 6.85 -2.39 -0.02 2.12 16 26 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 27 H 0.05 1.70 6.63 -2.39 -0.02 1.68 16 28 H 0.10 4.53 6.53 -2.39 -0.02 4.51 16 29 H 0.08 3.13 3.92 -3.47 -0.01 3.12 16 30 H 0.02 1.09 5.30 -2.39 -0.01 1.08 16 31 H 0.03 1.72 7.35 -2.39 -0.02 1.70 16 32 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 33 H 0.18 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.21 -0.95 8.14 -2.39 -0.02 -0.97 16 35 H 0.17 0.16 8.14 -2.38 -0.02 0.14 16 36 H 0.16 0.21 8.14 -2.39 -0.02 0.19 16 Total: -1.00 -86.15 318.60 -2.97 -89.12 By element: Atomic # 1 Polarization: -1.44 SS G_CDS: 1.07 Total: -0.37 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: 5.36 Total: -7.80 kcal Atomic # 7 Polarization: -118.15 SS G_CDS: -6.60 Total: -124.74 kcal Atomic # 8 Polarization: -58.23 SS G_CDS: -4.35 Total: -62.58 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.89 Total: 47.17 kcal Atomic # 16 Polarization: 58.36 SS G_CDS: -0.27 Total: 58.09 kcal Atomic # 17 Polarization: 1.19 SS G_CDS: -0.08 Total: 1.11 kcal Total: -86.15 -2.97 -89.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311912727.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.235 kcal (2) G-P(sol) polarization free energy of solvation -86.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds