Wall clock time and date at job start Tue Mar 31 2020 15:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35892 * 117.00105 * 2 1 4 4 C 1.38764 * 120.05113 * 180.02562 * 3 2 1 5 5 C 1.38130 * 119.97410 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.06851 * 0.02562 * 5 4 3 7 7 S 1.76199 * 119.95268 * 179.97438 * 6 5 4 8 8 O 1.42100 * 106.39920 * 1.45554 * 7 6 5 9 9 O 1.42095 * 106.40150 * 228.54054 * 7 6 5 10 10 N 1.65593 * 107.21942 * 114.99679 * 7 6 5 11 11 C 1.36935 * 120.00237 * 90.00166 * 10 7 6 12 12 H 1.07997 * 120.00340 * 232.86426 * 11 10 7 13 13 C 1.38813 * 119.99685 * 52.86276 * 11 10 7 14 14 N 1.31620 * 120.00256 * 20.19299 * 13 11 10 15 15 Si 1.86802 * 119.99828 * 200.19516 * 13 11 10 16 16 H 1.48503 * 109.47232 * 179.97438 * 15 13 11 17 17 H 1.48506 * 109.46859 * 299.99939 * 15 13 11 18 18 H 1.48505 * 109.47143 * 59.99768 * 15 13 11 19 19 C 1.46505 * 120.00038 * 269.99776 * 10 7 6 20 20 C 1.52994 * 117.49722 * 183.42201 * 19 10 7 21 21 C 1.53003 * 117.49664 * 114.76254 * 19 10 7 22 22 C 1.38372 * 120.09628 * 0.24777 * 6 5 4 23 23 Cl 1.73605 * 119.98096 * 179.72854 * 22 6 5 24 24 C 1.38276 * 120.02939 * 359.45537 * 22 6 5 25 25 H 1.08994 * 109.47372 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47036 * 300.00380 * 1 2 3 27 27 H 1.09000 * 109.46877 * 59.99692 * 1 2 3 28 28 H 1.08011 * 120.00930 * 359.97438 * 4 3 2 29 29 H 1.07998 * 119.96366 * 179.97438 * 5 4 3 30 30 H 0.97002 * 119.99830 * 174.96181 * 14 13 11 31 31 H 1.08997 * 115.54918 * 329.09962 * 19 10 7 32 32 H 1.08995 * 117.50178 * 0.02562 * 20 19 10 33 33 H 1.09007 * 117.49403 * 145.02296 * 20 19 10 34 34 H 1.08999 * 117.50007 * 214.98135 * 21 19 10 35 35 H 1.08997 * 117.49884 * 359.97438 * 21 19 10 36 36 H 1.07999 * 120.03480 * 180.29628 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4317 1.2846 -0.0005 5 6 4.0571 2.5162 0.0000 6 6 3.3040 3.6757 0.0016 7 16 4.1050 5.2451 0.0030 8 8 5.5011 4.9829 -0.0326 9 8 3.4840 6.0116 1.0256 10 7 3.7319 5.9871 -1.4296 11 6 2.6205 6.7820 -1.5199 12 1 1.8930 6.6067 -2.2985 13 6 2.4291 7.8132 -0.6105 14 7 3.4507 8.2894 0.0692 15 14 0.7215 8.5249 -0.3513 16 1 0.7848 9.6060 0.6648 17 1 0.2163 9.0786 -1.6333 18 1 -0.1941 7.4553 0.1210 19 6 4.5908 5.7932 -2.6005 20 6 4.2382 6.5685 -3.8714 21 6 3.9921 5.0593 -3.8021 22 6 1.9220 3.6054 0.0079 23 17 0.9793 5.0631 0.0170 24 6 1.2917 2.3747 0.0011 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 4.0209 0.3794 -0.0005 29 1 5.1356 2.5735 0.0000 30 1 3.3313 9.0573 0.6498 31 1 5.6472 5.6307 -2.3868 32 1 3.3674 7.2231 -3.8364 33 1 5.0627 6.9158 -4.4942 34 1 4.6547 4.4143 -4.3792 35 1 2.9593 4.7203 -3.7213 36 1 0.2131 2.3198 0.0012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341501414.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:42 Heat of formation + Delta-G solvation = -42.168875 kcal Electronic energy + Delta-G solvation = -25276.268454 eV Core-core repulsion = 21494.803273 eV Total energy + Delta-G solvation = -3781.465181 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.98558 -37.35833 -37.12719 -35.89858 -35.34409 -34.04474 -33.26026 -30.70445 -30.53389 -30.02710 -27.33965 -24.94232 -22.54697 -22.28562 -21.56302 -20.53021 -18.80694 -18.31406 -17.31773 -16.43870 -16.06175 -15.83115 -15.65866 -15.17146 -14.74279 -14.37363 -14.04711 -13.82636 -13.59467 -13.15554 -12.95453 -12.88886 -12.31138 -12.02502 -11.79782 -11.54574 -11.40262 -11.29693 -10.91900 -10.80839 -10.62826 -10.52803 -10.45433 -10.36194 -10.31279 -10.11165 -9.91450 -9.49585 -9.29579 -8.65506 -8.59461 -8.17208 -7.48033 -6.51444 -4.12737 1.28028 1.45986 2.00961 2.59872 3.15240 3.18634 3.20806 3.29850 3.72917 4.07898 4.58976 4.73261 4.89186 4.95136 4.95931 5.03277 5.15897 5.31738 5.38232 5.50698 5.68831 5.75434 5.80543 5.86439 5.92412 6.11245 6.24571 6.31447 6.32850 6.43869 6.63838 6.78504 6.82385 7.00482 7.33808 7.38984 7.55367 8.20912 8.89995 9.33441 10.54878 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.013856 B = 0.006546 C = 0.005590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.294966 B = 4276.316150 C = 5007.835892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.316 6.316 3 C 0.162 3.838 4 C -0.179 4.179 5 C 0.010 3.990 6 C -0.691 4.691 7 S 2.560 3.440 8 O -1.016 7.016 9 O -0.933 6.933 10 N -0.783 5.783 11 C -0.262 4.262 12 H 0.080 0.920 13 C 0.070 3.930 14 N -0.777 5.777 15 Si 0.906 3.094 16 H -0.278 1.278 17 H -0.271 1.271 18 H -0.263 1.263 19 C 0.099 3.901 20 C -0.161 4.161 21 C -0.214 4.214 22 C 0.085 3.915 23 Cl -0.013 7.013 24 C -0.231 4.231 25 H 0.100 0.900 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.134 0.866 29 H 0.147 0.853 30 H 0.280 0.720 31 H 0.117 0.883 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.258 -9.594 -3.494 11.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.229 6.229 3 C 0.116 3.884 4 C -0.198 4.198 5 C -0.009 4.009 6 C -0.767 4.767 7 S 2.658 3.342 8 O -1.005 7.005 9 O -0.921 6.921 10 N -0.605 5.605 11 C -0.410 4.410 12 H 0.097 0.903 13 C -0.149 4.149 14 N -0.412 5.412 15 Si 0.732 3.268 16 H -0.203 1.203 17 H -0.196 1.196 18 H -0.189 1.189 19 C -0.010 4.010 20 C -0.200 4.200 21 C -0.255 4.255 22 C 0.057 3.943 23 Cl 0.016 6.984 24 C -0.251 4.251 25 H 0.118 0.882 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.151 0.849 29 H 0.164 0.836 30 H 0.091 0.909 31 H 0.135 0.865 32 H 0.126 0.874 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.574 -9.543 -2.446 10.861 hybrid contribution -1.632 -0.194 0.067 1.645 sum -6.206 -9.737 -2.378 11.789 Atomic orbital electron populations 1.23091 0.78352 1.03829 1.01783 1.86065 1.21535 1.26858 1.88416 1.18979 0.92290 0.83553 0.93546 1.20545 0.91204 0.98915 1.09169 1.20755 1.00152 0.89829 0.90183 1.32406 1.02977 1.26773 1.14502 1.10742 0.74078 0.72275 0.77070 1.93276 1.33342 1.86041 1.87854 1.93454 1.76354 1.65463 1.56833 1.52322 1.33449 1.49909 1.24847 1.18826 0.99347 1.06926 1.15926 0.90264 1.25631 0.98066 0.95321 0.95869 1.69757 1.30918 1.19056 1.21510 0.86309 0.82844 0.79170 0.78449 1.20272 1.19577 1.18860 1.21379 0.93746 1.03348 0.82527 1.23059 1.03581 0.93902 0.99470 1.23361 1.02210 0.95133 1.04748 1.20496 0.91448 0.89285 0.93122 1.98525 1.72698 1.31550 1.95579 1.21116 1.00180 0.91135 1.12705 0.88213 0.92453 0.92375 0.84851 0.83581 0.90895 0.86517 0.87362 0.89818 0.89836 0.89164 0.84719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.38 10.50 -19.40 -0.20 -4.58 16 3 C 0.16 2.64 6.69 -39.22 -0.26 2.38 16 4 C -0.18 -2.96 9.99 -39.43 -0.39 -3.35 16 5 C 0.01 0.19 9.54 -39.61 -0.38 -0.19 16 6 C -0.69 -14.95 5.91 -39.52 -0.23 -15.18 16 7 S 2.56 64.11 4.96 -107.50 -0.53 63.58 16 8 O -1.02 -26.76 15.80 -57.17 -0.90 -27.67 16 9 O -0.93 -25.84 12.75 -57.17 -0.73 -26.56 16 10 N -0.78 -18.54 3.00 -53.43 -0.16 -18.70 16 11 C -0.26 -6.24 4.86 -15.06 -0.07 -6.31 16 12 H 0.08 1.79 7.68 -52.49 -0.40 1.39 16 13 C 0.07 1.74 3.75 -17.43 -0.07 1.67 16 14 N -0.78 -20.96 11.59 55.49 0.64 -20.32 16 15 Si 0.91 19.58 28.12 -169.99 -4.78 14.80 16 16 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 18 H -0.26 -5.53 6.25 56.52 0.35 -5.17 16 19 C 0.10 2.05 6.32 -67.93 -0.43 1.62 16 20 C -0.16 -2.86 9.83 -26.70 -0.26 -3.12 16 21 C -0.21 -3.71 10.36 -26.69 -0.28 -3.98 16 22 C 0.08 1.72 6.30 -39.52 -0.25 1.47 16 23 Cl -0.01 -0.28 20.82 -51.86 -1.08 -1.36 16 24 C -0.23 -3.95 8.82 -39.40 -0.35 -4.30 16 25 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 27 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 28 H 0.13 1.81 8.06 -52.48 -0.42 1.39 16 29 H 0.15 2.62 7.33 -52.49 -0.38 2.23 16 30 H 0.28 7.18 8.32 -40.82 -0.34 6.84 16 31 H 0.12 2.42 7.46 -51.93 -0.39 2.03 16 32 H 0.11 2.03 6.93 -51.93 -0.36 1.67 16 33 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.14 1.93 6.30 -52.49 -0.33 1.59 16 LS Contribution 320.14 15.07 4.82 4.82 Total: -1.00 -30.62 320.14 -8.86 -39.48 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -3.96 Total: 4.59 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: -1.98 Total: -28.07 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.48 Total: -39.02 kcal Atomic # 8 Polarization: -56.98 SS G_CDS: -1.84 Total: -58.81 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.78 Total: 14.80 kcal Atomic # 16 Polarization: 64.11 SS G_CDS: -0.53 Total: 63.58 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.08 Total: -1.36 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.62 -8.86 -39.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341501414.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.692 kcal (2) G-P(sol) polarization free energy of solvation -30.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds