Wall clock time and date at job start Tue Mar 31 2020 15:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35892 * 117.00105 * 2 1 4 4 C 1.38764 * 120.05113 * 180.02562 * 3 2 1 5 5 C 1.38130 * 119.97410 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.06851 * 0.02562 * 5 4 3 7 7 S 1.76199 * 119.95268 * 179.97438 * 6 5 4 8 8 O 1.42100 * 106.39920 * 1.45554 * 7 6 5 9 9 O 1.42095 * 106.40150 * 228.54054 * 7 6 5 10 10 N 1.65593 * 107.21942 * 114.99679 * 7 6 5 11 11 C 1.36935 * 120.00237 * 90.00166 * 10 7 6 12 12 H 1.07997 * 120.00340 * 232.86426 * 11 10 7 13 13 C 1.38813 * 119.99685 * 52.86276 * 11 10 7 14 14 N 1.31620 * 120.00256 * 20.19299 * 13 11 10 15 15 Si 1.86802 * 119.99828 * 200.19516 * 13 11 10 16 16 H 1.48503 * 109.47232 * 179.97438 * 15 13 11 17 17 H 1.48506 * 109.46859 * 299.99939 * 15 13 11 18 18 H 1.48505 * 109.47143 * 59.99768 * 15 13 11 19 19 C 1.46505 * 120.00038 * 269.99776 * 10 7 6 20 20 C 1.52994 * 117.49722 * 183.42201 * 19 10 7 21 21 C 1.53003 * 117.49664 * 114.76254 * 19 10 7 22 22 C 1.38372 * 120.09628 * 0.24777 * 6 5 4 23 23 Cl 1.73605 * 119.98096 * 179.72854 * 22 6 5 24 24 C 1.38276 * 120.02939 * 359.45537 * 22 6 5 25 25 H 1.08994 * 109.47372 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47036 * 300.00380 * 1 2 3 27 27 H 1.09000 * 109.46877 * 59.99692 * 1 2 3 28 28 H 1.08011 * 120.00930 * 359.97438 * 4 3 2 29 29 H 1.07998 * 119.96366 * 179.97438 * 5 4 3 30 30 H 0.97002 * 119.99830 * 174.96181 * 14 13 11 31 31 H 1.08997 * 115.54918 * 329.09962 * 19 10 7 32 32 H 1.08995 * 117.50178 * 0.02562 * 20 19 10 33 33 H 1.09007 * 117.49403 * 145.02296 * 20 19 10 34 34 H 1.08999 * 117.50007 * 214.98135 * 21 19 10 35 35 H 1.08997 * 117.49884 * 359.97438 * 21 19 10 36 36 H 1.07999 * 120.03480 * 180.29628 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4317 1.2846 -0.0005 5 6 4.0571 2.5162 0.0000 6 6 3.3040 3.6757 0.0016 7 16 4.1050 5.2451 0.0030 8 8 5.5011 4.9829 -0.0326 9 8 3.4840 6.0116 1.0256 10 7 3.7319 5.9871 -1.4296 11 6 2.6205 6.7820 -1.5199 12 1 1.8930 6.6067 -2.2985 13 6 2.4291 7.8132 -0.6105 14 7 3.4507 8.2894 0.0692 15 14 0.7215 8.5249 -0.3513 16 1 0.7848 9.6060 0.6648 17 1 0.2163 9.0786 -1.6333 18 1 -0.1941 7.4553 0.1210 19 6 4.5908 5.7932 -2.6005 20 6 4.2382 6.5685 -3.8714 21 6 3.9921 5.0593 -3.8021 22 6 1.9220 3.6054 0.0079 23 17 0.9793 5.0631 0.0170 24 6 1.2917 2.3747 0.0011 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 4.0209 0.3794 -0.0005 29 1 5.1356 2.5735 0.0000 30 1 3.3313 9.0573 0.6498 31 1 5.6472 5.6307 -2.3868 32 1 3.3674 7.2231 -3.8364 33 1 5.0627 6.9158 -4.4942 34 1 4.6547 4.4143 -4.3792 35 1 2.9593 4.7203 -3.7213 36 1 0.2131 2.3198 0.0012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341501414.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:41 Heat of formation + Delta-G solvation = -62.470408 kcal Electronic energy + Delta-G solvation = -25277.148794 eV Core-core repulsion = 21494.803273 eV Total energy + Delta-G solvation = -3782.345521 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.22023 -38.73753 -38.65201 -37.67430 -37.06727 -36.02374 -35.04139 -32.40901 -31.99584 -31.37510 -28.28215 -26.77520 -23.95691 -23.63621 -22.96580 -22.16489 -20.63633 -19.65736 -18.90074 -17.87596 -17.79885 -17.23636 -17.03399 -16.80825 -16.21337 -15.98582 -15.54515 -15.22514 -15.08709 -14.69327 -14.41613 -14.33746 -14.00781 -13.49972 -13.16761 -13.07802 -12.87667 -12.78941 -12.48504 -12.38611 -12.31064 -12.13187 -12.12349 -12.06629 -11.92405 -11.83182 -11.53263 -11.21265 -10.88265 -10.46843 -10.00502 -9.56919 -9.22119 -8.37534 -6.01300 -0.19097 0.05866 0.19445 1.03246 1.45605 1.49284 1.57237 2.13979 2.26634 2.35439 2.86429 3.08151 3.24359 3.49688 3.67167 3.80139 4.02159 4.20843 4.29669 4.33063 4.33311 4.39306 4.43936 4.52948 4.54030 4.67359 4.81835 4.93580 4.94360 4.98400 5.12597 5.31314 5.45806 5.50710 5.58359 5.87865 6.16726 6.33532 7.07489 7.51536 8.69086 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.013856 B = 0.006546 C = 0.005590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.294966 B = 4276.316150 C = 5007.835892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.315 6.315 3 C 0.176 3.824 4 C -0.172 4.172 5 C 0.000 4.000 6 C -0.718 4.718 7 S 2.561 3.439 8 O -1.043 7.043 9 O -0.971 6.971 10 N -0.794 5.794 11 C -0.254 4.254 12 H 0.090 0.910 13 C 0.034 3.966 14 N -0.824 5.824 15 Si 0.942 3.058 16 H -0.285 1.285 17 H -0.248 1.248 18 H -0.256 1.256 19 C 0.056 3.944 20 C -0.149 4.149 21 C -0.186 4.186 22 C 0.069 3.931 23 Cl -0.030 7.030 24 C -0.226 4.226 25 H 0.132 0.868 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.167 0.833 29 H 0.148 0.852 30 H 0.276 0.724 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.086 0.914 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.016 -12.201 -5.018 14.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.227 6.227 3 C 0.129 3.871 4 C -0.191 4.191 5 C -0.019 4.019 6 C -0.798 4.798 7 S 2.664 3.336 8 O -1.033 7.033 9 O -0.960 6.960 10 N -0.616 5.616 11 C -0.402 4.402 12 H 0.107 0.893 13 C -0.180 4.180 14 N -0.461 5.461 15 Si 0.766 3.234 16 H -0.211 1.211 17 H -0.171 1.171 18 H -0.181 1.181 19 C -0.053 4.053 20 C -0.187 4.187 21 C -0.226 4.226 22 C 0.041 3.959 23 Cl -0.001 7.001 24 C -0.246 4.246 25 H 0.150 0.850 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.184 0.816 29 H 0.165 0.835 30 H 0.086 0.914 31 H 0.125 0.875 32 H 0.116 0.884 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.105 0.895 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.330 -12.121 -4.008 14.249 hybrid contribution -1.127 0.335 0.518 1.285 sum -7.456 -11.786 -3.489 14.376 Atomic orbital electron populations 1.23515 0.75848 1.06390 1.02600 1.86096 1.24003 1.25127 1.87517 1.19057 0.92347 0.84219 0.91477 1.20834 0.91908 0.98949 1.07392 1.20854 1.00284 0.90170 0.90607 1.31871 1.03839 1.25889 1.18243 1.10144 0.73467 0.72957 0.77000 1.93220 1.35088 1.86756 1.88251 1.93400 1.76769 1.67375 1.58423 1.52217 1.33925 1.50240 1.25244 1.19009 0.99484 1.06119 1.15592 0.89257 1.26336 1.00419 0.95706 0.95560 1.69860 1.32880 1.20112 1.23226 0.85731 0.79875 0.78644 0.79163 1.21090 1.17143 1.18144 1.21589 0.93355 1.07506 0.82815 1.23130 1.03894 0.94298 0.97426 1.23378 1.02233 0.95237 1.01753 1.20587 0.90945 0.89763 0.94592 1.98504 1.72760 1.33027 1.95815 1.21363 1.01736 0.90051 1.11465 0.84964 0.91710 0.91433 0.81596 0.83482 0.91392 0.87498 0.88425 0.87113 0.86879 0.89499 0.81925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.27 16 2 O -0.31 -7.37 10.50 -92.34 -0.97 -8.34 16 3 C 0.18 5.14 6.69 22.50 0.15 5.29 16 4 C -0.17 -5.20 9.99 22.37 0.22 -4.98 16 5 C 0.00 0.00 9.54 22.25 0.21 0.22 16 6 C -0.72 -31.16 5.91 22.31 0.13 -31.03 16 7 S 2.56 132.52 4.96 -56.49 -0.28 132.24 16 8 O -1.04 -57.29 15.80 -128.00 -2.02 -59.32 16 9 O -0.97 -56.10 12.75 -128.00 -1.63 -57.74 16 10 N -0.79 -38.29 3.00 -322.94 -0.97 -39.26 16 11 C -0.25 -12.23 4.86 84.03 0.41 -11.82 16 12 H 0.09 4.01 7.68 -2.91 -0.02 3.99 16 13 C 0.03 1.74 3.75 84.86 0.32 2.06 16 14 N -0.82 -46.26 11.59 21.65 0.25 -46.01 16 15 Si 0.94 40.05 28.12 68.60 1.93 41.97 16 16 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 17 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 18 H -0.26 -10.49 6.25 99.48 0.62 -9.87 16 19 C 0.06 2.31 6.32 44.99 0.28 2.59 16 20 C -0.15 -5.07 9.83 30.62 0.30 -4.77 16 21 C -0.19 -6.08 10.36 30.62 0.32 -5.76 16 22 C 0.07 2.76 6.30 22.31 0.14 2.90 16 23 Cl -0.03 -1.28 20.82 -2.72 -0.06 -1.34 16 24 C -0.23 -7.16 8.82 22.39 0.20 -6.96 16 25 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.06 0.91 7.66 -2.38 -0.02 0.89 16 27 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16 28 H 0.17 3.87 8.06 -2.91 -0.02 3.85 16 29 H 0.15 5.30 7.33 -2.91 -0.02 5.28 16 30 H 0.28 14.89 8.32 -92.71 -0.77 14.12 16 31 H 0.11 4.55 7.46 -2.39 -0.02 4.54 16 32 H 0.10 3.56 6.93 -2.39 -0.02 3.54 16 33 H 0.11 3.14 8.14 -2.38 -0.02 3.12 16 34 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 35 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 36 H 0.16 4.09 6.30 -2.91 -0.02 4.08 16 Total: -1.00 -68.87 320.14 1.08 -67.79 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 1.03 Total: 20.98 kcal Atomic # 6 Polarization: -54.79 SS G_CDS: 3.80 Total: -50.99 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -0.72 Total: -85.27 kcal Atomic # 8 Polarization: -120.76 SS G_CDS: -4.62 Total: -125.39 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 1.93 Total: 41.97 kcal Atomic # 16 Polarization: 132.52 SS G_CDS: -0.28 Total: 132.24 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.06 Total: -1.34 kcal Total: -68.87 1.08 -67.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341501414.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.319 kcal (2) G-P(sol) polarization free energy of solvation -68.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds