Wall clock time and date at job start Tue Mar 31 2020 16:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86793 * 120.00306 * 2 1 4 4 H 1.48500 * 109.47352 * 240.00219 * 3 2 1 5 5 H 1.48499 * 109.47252 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47486 * 120.00125 * 3 2 1 7 7 C 1.38956 * 119.99662 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99785 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00285 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00018 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99955 * 359.97438 * 10 9 7 12 12 C 1.50695 * 119.99593 * 180.02562 * 10 9 7 13 13 N 1.46503 * 109.46681 * 179.97438 * 12 10 9 14 14 C 1.34786 * 119.99539 * 179.97438 * 13 12 10 15 15 O 1.21585 * 120.00131 * 359.97438 * 14 13 12 16 16 N 1.34773 * 119.99570 * 180.02562 * 14 13 12 17 17 C 1.46502 * 119.99861 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.47040 * 179.97438 * 17 16 14 19 19 C 1.50699 * 109.47049 * 179.97438 * 18 17 16 20 20 C 1.33347 * 125.18409 * 90.00037 * 19 18 17 21 21 C 1.38475 * 114.92849 * 180.02562 * 20 19 18 22 22 C 1.33503 * 114.88382 * 0.02562 * 21 20 19 23 23 Cl 1.73595 * 125.20870 * 179.97438 * 22 21 20 24 24 S 1.75877 * 125.19207 * 270.00312 * 19 18 17 25 25 H 0.96999 * 119.99796 * 0.02562 * 1 2 3 26 26 H 0.97000 * 119.99457 * 0.02562 * 9 7 2 27 27 H 1.08994 * 109.47472 * 59.99627 * 12 10 9 28 28 H 1.09005 * 109.46703 * 299.99252 * 12 10 9 29 29 H 0.96994 * 120.00130 * 0.02562 * 13 12 10 30 30 H 0.97003 * 120.00398 * 0.02562 * 16 14 13 31 31 H 1.09005 * 109.46684 * 60.00070 * 17 16 14 32 32 H 1.08992 * 109.47007 * 299.99787 * 17 16 14 33 33 H 1.09006 * 109.46804 * 60.00150 * 18 17 16 34 34 H 1.08997 * 109.47086 * 300.00346 * 18 17 16 35 35 H 1.07996 * 122.54060 * 0.02599 * 20 19 18 36 36 H 1.08005 * 122.55896 * 179.73668 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.1018 1.6963 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6963 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0887 -1.2035 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5580 -0.0005 11 8 3.2101 -3.5580 -0.0010 12 6 1.2435 -4.8630 -0.0011 13 7 2.1956 -5.9765 -0.0016 14 6 1.7462 -7.2472 -0.0017 15 8 0.5508 -7.4693 -0.0008 16 7 2.6220 -8.2716 -0.0016 17 6 2.1336 -9.6528 -0.0011 18 6 3.3236 -10.6146 -0.0018 19 6 2.8212 -12.0354 -0.0006 20 6 2.5640 -12.7603 -1.0899 21 6 2.1095 -14.0447 -0.8423 22 6 1.9974 -14.3616 0.4498 23 17 1.4548 -15.8930 1.0612 24 16 2.4846 -12.9903 1.4375 25 1 -0.4850 0.8401 -0.0004 26 1 0.3533 -2.3906 -0.0005 27 1 0.6172 -4.9205 -0.8913 28 1 0.6166 -4.9208 0.8887 29 1 3.1492 -5.7993 -0.0012 30 1 3.5757 -8.0945 -0.0011 31 1 1.5278 -9.8243 -0.8909 32 1 1.5283 -9.8238 0.8891 33 1 3.9297 -10.4432 0.8879 34 1 3.9286 -10.4434 -0.8921 35 1 2.6999 -12.3750 -2.0895 36 1 1.8600 -14.7357 -1.6340 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344389755.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:39 Heat of formation + Delta-G solvation = -45.974385 kcal Electronic energy + Delta-G solvation = -21611.898551 eV Core-core repulsion = 17862.561102 eV Total energy + Delta-G solvation = -3749.337449 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -39.90123 -38.65884 -38.19631 -37.13191 -35.53754 -34.40001 -33.65707 -32.25302 -31.36633 -28.46179 -27.09940 -24.82206 -24.13099 -22.62535 -20.81873 -19.90769 -19.59519 -18.56112 -18.02542 -17.63771 -16.38125 -16.20724 -15.74759 -15.58277 -14.86389 -14.68534 -14.56281 -14.18183 -14.02954 -13.89519 -13.70949 -13.52136 -13.22484 -12.91043 -12.63353 -12.18223 -12.06522 -11.75618 -11.69258 -11.63069 -11.37863 -11.12184 -11.10368 -10.51044 -10.32011 -10.08834 -9.62803 -9.22949 -9.01836 -8.96797 -8.63142 -8.62928 -8.10196 -6.51440 -3.93559 0.32561 0.65096 1.35848 1.79321 2.13548 2.77270 3.13526 3.21500 3.25316 3.37330 3.75023 4.06965 4.21250 4.50004 4.61381 4.62054 4.81746 4.89981 4.98608 5.17209 5.18470 5.41934 5.55528 5.65619 5.67080 5.89263 5.92034 6.00356 6.07949 6.41389 6.73402 7.04068 7.45633 7.92034 8.20172 8.45058 8.76299 9.04403 9.39379 9.87270 10.65337 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.051317 B = 0.001516 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.501280 B =18462.651903 C =18632.784742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.307 4.307 8 H 0.105 0.895 9 N -0.548 5.548 10 C 0.428 3.572 11 O -0.599 6.599 12 C 0.128 3.872 13 N -0.724 5.724 14 C 0.705 3.295 15 O -0.596 6.596 16 N -0.751 5.751 17 C 0.145 3.855 18 C -0.062 4.062 19 C -0.164 4.164 20 C -0.128 4.128 21 C -0.116 4.116 22 C -0.154 4.154 23 Cl -0.016 7.016 24 S 0.158 5.842 25 H 0.275 0.725 26 H 0.396 0.604 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.407 0.593 30 H 0.397 0.603 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.150 0.850 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.872 -28.070 -0.028 28.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.436 4.436 8 H 0.123 0.877 9 N -0.183 5.183 10 C 0.214 3.786 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.381 5.381 14 C 0.404 3.596 15 O -0.475 6.475 16 N -0.408 5.408 17 C 0.020 3.980 18 C -0.102 4.102 19 C -0.283 4.283 20 C -0.158 4.158 21 C -0.148 4.148 22 C -0.297 4.297 23 Cl 0.012 6.988 24 S 0.421 5.579 25 H 0.085 0.915 26 H 0.230 0.770 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.244 0.756 30 H 0.231 0.769 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.168 0.832 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.439 -27.960 1.596 28.355 hybrid contribution 0.441 0.496 -1.463 1.606 sum 4.880 -27.464 0.134 27.895 Atomic orbital electron populations 1.69605 1.06009 1.28635 1.49170 1.25324 0.95665 0.99927 0.96765 0.85865 0.78763 0.80148 0.79125 1.19801 1.20860 1.19798 1.19681 0.93433 0.82028 1.48451 0.87737 1.41782 1.09497 1.04441 1.62604 1.19759 0.88291 0.85011 0.85557 1.90486 1.13753 1.86868 1.57439 1.20787 0.91211 0.84835 1.03166 1.44769 1.11259 1.03303 1.78788 1.15824 0.85160 0.80555 0.78024 1.90917 1.14046 1.84260 1.58278 1.44986 1.09151 1.05000 1.81654 1.21111 0.95091 0.78707 1.03072 1.20369 0.97839 0.87372 1.04638 1.24355 1.08008 1.00197 0.95743 1.20017 1.02609 0.93223 0.99938 1.20206 1.01946 0.97620 0.95018 1.25274 1.13093 0.93962 0.97406 1.98375 1.88122 1.25194 1.87095 1.84559 1.63609 1.02056 1.07662 0.91531 0.77001 0.90000 0.90001 0.75580 0.76877 0.91104 0.91381 0.89624 0.88637 0.83203 0.83324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.75 13.05 55.50 0.72 -23.02 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.40 29.55 -169.99 -5.02 15.38 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.31 -8.28 9.68 -14.93 -0.14 -8.42 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 9 N -0.55 -13.51 5.29 -10.96 -0.06 -13.57 16 10 C 0.43 9.72 7.85 -10.99 -0.09 9.64 16 11 O -0.60 -15.10 15.24 5.55 0.08 -15.01 16 12 C 0.13 2.37 6.15 -5.19 -0.03 2.33 16 13 N -0.72 -11.86 5.53 -66.41 -0.37 -12.23 16 14 C 0.70 11.10 8.57 -86.91 -0.74 10.36 16 15 O -0.60 -11.56 16.34 5.29 0.09 -11.47 16 16 N -0.75 -8.21 5.56 -65.22 -0.36 -8.57 16 17 C 0.15 1.36 5.66 -4.04 -0.02 1.34 16 18 C -0.06 -0.39 5.82 -27.88 -0.16 -0.55 16 19 C -0.16 -1.16 5.76 -36.02 -0.21 -1.37 16 20 C -0.13 -0.85 10.05 -41.20 -0.41 -1.27 16 21 C -0.12 -0.81 10.13 -41.15 -0.42 -1.22 16 22 C -0.15 -1.21 7.10 29.08 0.21 -1.00 16 23 Cl -0.02 -0.12 29.29 -51.86 -1.52 -1.64 16 24 S 0.16 1.20 23.33 -107.50 -2.51 -1.31 16 25 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 26 H 0.40 9.40 7.90 -40.82 -0.32 9.08 16 27 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 28 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.41 6.39 7.45 -40.82 -0.30 6.09 16 30 H 0.40 3.25 8.49 -40.82 -0.35 2.90 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 36 H 0.15 0.80 8.06 -52.48 -0.42 0.37 16 LS Contribution 351.04 15.07 5.29 5.29 Total: -1.00 -32.13 351.04 -9.64 -41.77 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -3.87 Total: 13.97 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: -2.12 Total: 10.43 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: -0.06 Total: -57.39 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: 0.17 Total: -26.48 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.51 Total: -1.31 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.52 Total: -1.64 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.13 -9.64 -41.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344389755.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.206 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds