Wall clock time and date at job start Tue Mar 31 2020 15:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42103 * 110.54183 * 2 1 4 4 O 1.42096 * 110.54445 * 223.25129 * 2 1 3 5 5 C 1.76197 * 104.45063 * 111.62389 * 2 1 3 6 6 C 1.37941 * 120.06484 * 114.99763 * 5 2 1 7 7 C 1.38384 * 120.17956 * 179.72344 * 6 5 2 8 8 C 1.38305 * 120.31889 * 0.25609 * 7 6 5 9 9 C 1.38113 * 120.12975 * 0.04585 * 8 7 6 10 10 Cl 1.73606 * 120.09148 * 179.97438 * 9 8 7 11 11 C 1.39588 * 120.07049 * 295.29718 * 5 2 1 12 12 C 1.47773 * 120.15306 * 359.97438 * 11 5 2 13 13 O 1.21556 * 119.99786 * 270.31782 * 12 11 5 14 14 N 1.34772 * 119.99775 * 90.31949 * 12 11 5 15 15 C 1.46501 * 119.99929 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47380 * 179.97438 * 15 14 12 17 17 C 1.50701 * 109.47146 * 180.02562 * 16 15 14 18 18 H 1.07994 * 119.99861 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99760 * 180.02562 * 17 16 15 20 20 N 1.31504 * 119.99768 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99975 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47002 * 90.00158 * 21 19 17 23 23 H 1.48498 * 109.46933 * 210.00198 * 21 19 17 24 24 H 1.48503 * 109.47051 * 330.00395 * 21 19 17 25 25 H 1.08999 * 109.47637 * 308.37079 * 1 2 3 26 26 H 1.09004 * 109.47339 * 68.37700 * 1 2 3 27 27 H 1.09003 * 109.47089 * 188.37348 * 1 2 3 28 28 H 1.08002 * 119.91236 * 0.02562 * 6 5 2 29 29 H 1.08005 * 119.83604 * 180.27730 * 7 6 5 30 30 H 1.08002 * 119.93520 * 180.02562 * 8 7 6 31 31 H 0.97002 * 120.00249 * 359.97438 * 14 12 11 32 32 H 1.08996 * 109.46996 * 300.00291 * 15 14 12 33 33 H 1.09009 * 109.47053 * 59.99914 * 15 14 12 34 34 H 1.09005 * 109.47288 * 300.00241 * 16 15 14 35 35 H 1.09003 * 109.46864 * 59.99625 * 16 15 14 36 36 H 0.97002 * 120.00237 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9691 -0.9117 5 6 2.2537 -0.6288 1.5861 6 6 2.9146 -1.8348 1.6925 7 6 3.2662 -2.3281 2.9367 8 6 2.9534 -1.6195 4.0825 9 6 2.2864 -0.4136 3.9915 10 17 1.8937 0.4747 5.4305 11 6 1.9283 0.0895 2.7380 12 6 1.2150 1.3792 2.6318 13 8 1.8433 2.4145 2.5276 14 7 -0.1323 1.4076 2.6506 15 6 -0.8396 2.6863 2.5459 16 6 -2.3489 2.4396 2.5915 17 6 -3.0764 3.7550 2.4832 18 1 -2.5181 4.6747 2.3906 19 6 -4.4548 3.7840 2.5023 20 7 -5.0896 4.9317 2.4072 21 14 -5.4204 2.1928 2.6617 22 1 -5.6543 1.8976 4.0982 23 1 -6.7250 2.3338 1.9665 24 1 -4.6494 1.0823 2.0473 25 1 -0.3634 0.6379 0.8057 26 1 -0.3634 0.3787 -0.9554 27 1 -0.3633 -1.0167 0.1497 28 1 3.1628 -2.3933 0.8020 29 1 3.7876 -3.2709 3.0133 30 1 3.2311 -2.0101 5.0504 31 1 -0.6338 0.5814 2.7334 32 1 -0.5510 3.3302 3.3766 33 1 -0.5791 3.1696 1.6042 34 1 -2.6372 1.7958 1.7605 35 1 -2.6097 1.9561 3.5330 36 1 -6.0593 4.9522 2.4203 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345158306.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:26 Heat of formation + Delta-G solvation = -73.349661 kcal Electronic energy + Delta-G solvation = -24205.098916 eV Core-core repulsion = 20422.281635 eV Total energy + Delta-G solvation = -3782.817281 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.52912 -38.76240 -37.21073 -36.84453 -36.10278 -35.28859 -33.03632 -32.14144 -31.48748 -30.11391 -29.56939 -25.66613 -24.02955 -23.58639 -21.01405 -20.87229 -19.35590 -18.44246 -17.35647 -17.01898 -16.89827 -16.35480 -15.84776 -15.59807 -15.43622 -15.10062 -14.91493 -14.28538 -13.91804 -13.82913 -13.49172 -13.23637 -13.17431 -12.93090 -12.67402 -12.41593 -12.23953 -12.10779 -12.03877 -11.60613 -11.54287 -11.29868 -11.22084 -10.96822 -10.54114 -10.47507 -10.07742 -9.89442 -9.79701 -9.40848 -9.28658 -8.82685 -8.67040 -6.17207 -4.18095 -0.22888 0.19238 0.47281 1.65029 2.38327 2.52884 2.76252 3.08032 3.19009 3.25511 3.27895 3.55038 3.95085 4.25933 4.30771 4.38098 4.53892 4.62051 4.66512 4.80055 4.95474 5.00422 5.15254 5.38550 5.44265 5.59157 5.62893 5.91915 6.04357 6.07228 6.41475 6.42911 6.97898 7.09934 7.47803 7.57805 8.12493 8.37191 8.87429 9.42126 10.95721 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.013180 B = 0.004327 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.888805 B = 6469.213138 C = 7517.065349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.665 4.665 2 S 2.481 3.519 3 O -0.906 6.906 4 O -0.937 6.937 5 C -0.623 4.623 6 C -0.020 4.020 7 C -0.115 4.115 8 C -0.060 4.060 9 C -0.029 4.029 10 Cl -0.039 7.039 11 C -0.019 4.019 12 C 0.521 3.479 13 O -0.474 6.474 14 N -0.721 5.721 15 C 0.123 3.877 16 C -0.023 4.023 17 C -0.524 4.524 18 H 0.078 0.922 19 C 0.071 3.929 20 N -0.896 5.896 21 Si 0.880 3.120 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.266 1.266 25 H 0.146 0.854 26 H 0.142 0.858 27 H 0.136 0.864 28 H 0.158 0.842 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.399 0.601 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.023 0.977 35 H 0.020 0.980 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.149 -19.577 0.868 24.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.816 4.816 2 S 2.659 3.341 3 O -0.903 6.903 4 O -0.935 6.935 5 C -0.708 4.708 6 C -0.039 4.039 7 C -0.134 4.134 8 C -0.079 4.079 9 C -0.058 4.058 10 Cl -0.010 7.010 11 C -0.024 4.024 12 C 0.302 3.698 13 O -0.346 6.346 14 N -0.375 5.375 15 C 0.002 3.998 16 C -0.061 4.061 17 C -0.563 4.563 18 H 0.096 0.904 19 C -0.131 4.131 20 N -0.534 5.534 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.191 1.191 25 H 0.164 0.836 26 H 0.161 0.839 27 H 0.154 0.846 28 H 0.175 0.825 29 H 0.165 0.835 30 H 0.165 0.835 31 H 0.234 0.766 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.041 0.959 35 H 0.038 0.962 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.958 -18.340 0.306 23.668 hybrid contribution -1.350 -1.406 1.181 2.279 sum 13.608 -19.746 1.486 24.027 Atomic orbital electron populations 1.30557 1.24013 1.12858 1.14174 1.05928 0.78839 0.75327 0.74032 1.93734 1.76954 1.34742 1.84853 1.93567 1.78015 1.62050 1.59820 1.30909 1.13918 1.05999 1.19927 1.21092 0.91357 0.91930 0.99516 1.21425 0.99874 1.00614 0.91486 1.21360 0.94132 0.91905 1.00508 1.21021 1.02114 0.94875 0.87746 1.98438 1.92420 1.74634 1.35503 1.19653 0.97035 0.93813 0.91880 1.18266 0.83398 0.88242 0.79903 1.90913 1.66474 1.32104 1.45075 1.46619 1.05164 1.12500 1.73205 1.21755 0.93170 0.82274 1.02590 1.19838 0.90083 0.99158 0.97038 1.20873 0.91550 0.92344 1.51493 0.90422 1.24982 0.97668 0.96104 0.94358 1.69891 1.08617 1.24954 1.49893 0.86795 0.79655 0.84268 0.78588 1.20195 1.21209 1.19108 0.83627 0.83929 0.84578 0.82479 0.83543 0.83466 0.76616 0.91083 0.90866 0.95889 0.96177 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -6.38 10.59 101.05 1.07 -5.31 16 2 S 2.48 30.49 5.26 -107.50 -0.57 29.93 16 3 O -0.91 -15.38 16.17 -63.41 -1.03 -16.40 16 4 O -0.94 -12.16 16.74 -57.54 -0.96 -13.12 16 5 C -0.62 -7.22 5.61 -39.19 -0.22 -7.44 16 6 C -0.02 -0.18 9.49 -39.64 -0.38 -0.55 16 7 C -0.11 -0.80 10.04 -39.50 -0.40 -1.20 16 8 C -0.06 -0.49 9.82 -39.60 -0.39 -0.88 16 9 C -0.03 -0.34 6.35 -39.07 -0.25 -0.59 16 10 Cl -0.04 -0.48 28.04 -51.86 -1.45 -1.94 16 11 C -0.02 -0.25 5.62 -104.94 -0.59 -0.84 16 12 C 0.52 8.54 4.04 -12.36 -0.05 8.49 16 13 O -0.47 -9.74 16.35 -7.00 -0.11 -9.85 16 14 N -0.72 -11.05 3.34 -61.27 -0.20 -11.25 16 15 C 0.12 2.33 5.55 -4.04 -0.02 2.31 16 16 C -0.02 -0.50 4.16 -27.88 -0.12 -0.61 16 17 C -0.52 -14.02 9.66 -34.44 -0.33 -14.35 16 18 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 19 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 20 N -0.90 -26.53 13.96 55.43 0.77 -25.76 16 21 Si 0.88 20.16 27.47 -169.99 -4.67 15.49 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.27 -5.64 6.54 56.52 0.37 -5.27 16 25 H 0.15 1.66 4.29 -51.92 -0.22 1.44 16 26 H 0.14 1.16 8.14 -51.92 -0.42 0.74 16 27 H 0.14 0.84 8.14 -51.92 -0.42 0.42 16 28 H 0.16 1.10 7.21 -52.49 -0.38 0.72 16 29 H 0.15 0.50 8.06 -52.48 -0.42 0.08 16 30 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 31 H 0.40 4.84 7.93 -40.82 -0.32 4.52 16 32 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 33 H 0.07 1.44 8.14 -51.92 -0.42 1.02 16 34 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 35 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 36 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 333.65 15.07 5.03 5.03 Total: -1.00 -36.26 333.65 -8.78 -45.04 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -3.81 Total: 1.95 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -1.77 Total: -19.12 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.57 Total: -37.01 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -2.10 Total: -39.37 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.67 Total: 15.49 kcal Atomic # 16 Polarization: 30.49 SS G_CDS: -0.57 Total: 29.93 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.45 Total: -1.94 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.26 -8.78 -45.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345158306.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.310 kcal (2) G-P(sol) polarization free energy of solvation -36.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds