Wall clock time and date at job start Tue Mar 31 2020 15:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42103 * 110.54183 * 2 1 4 4 O 1.42096 * 110.54445 * 223.25129 * 2 1 3 5 5 C 1.76197 * 104.45063 * 111.62389 * 2 1 3 6 6 C 1.37941 * 120.06484 * 114.99763 * 5 2 1 7 7 C 1.38384 * 120.17956 * 179.72344 * 6 5 2 8 8 C 1.38305 * 120.31889 * 0.25609 * 7 6 5 9 9 C 1.38113 * 120.12975 * 0.04585 * 8 7 6 10 10 Cl 1.73606 * 120.09148 * 179.97438 * 9 8 7 11 11 C 1.39588 * 120.07049 * 295.29718 * 5 2 1 12 12 C 1.47773 * 120.15306 * 359.97438 * 11 5 2 13 13 O 1.21556 * 119.99786 * 270.31782 * 12 11 5 14 14 N 1.34772 * 119.99775 * 90.31949 * 12 11 5 15 15 C 1.46501 * 119.99929 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47380 * 179.97438 * 15 14 12 17 17 C 1.50701 * 109.47146 * 180.02562 * 16 15 14 18 18 H 1.07994 * 119.99861 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99760 * 180.02562 * 17 16 15 20 20 N 1.31504 * 119.99768 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99975 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47002 * 90.00158 * 21 19 17 23 23 H 1.48498 * 109.46933 * 210.00198 * 21 19 17 24 24 H 1.48503 * 109.47051 * 330.00395 * 21 19 17 25 25 H 1.08999 * 109.47637 * 308.37079 * 1 2 3 26 26 H 1.09004 * 109.47339 * 68.37700 * 1 2 3 27 27 H 1.09003 * 109.47089 * 188.37348 * 1 2 3 28 28 H 1.08002 * 119.91236 * 0.02562 * 6 5 2 29 29 H 1.08005 * 119.83604 * 180.27730 * 7 6 5 30 30 H 1.08002 * 119.93520 * 180.02562 * 8 7 6 31 31 H 0.97002 * 120.00249 * 359.97438 * 14 12 11 32 32 H 1.08996 * 109.46996 * 300.00291 * 15 14 12 33 33 H 1.09009 * 109.47053 * 59.99914 * 15 14 12 34 34 H 1.09005 * 109.47288 * 300.00241 * 16 15 14 35 35 H 1.09003 * 109.46864 * 59.99625 * 16 15 14 36 36 H 0.97002 * 120.00237 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9691 -0.9117 5 6 2.2537 -0.6288 1.5861 6 6 2.9146 -1.8348 1.6925 7 6 3.2662 -2.3281 2.9367 8 6 2.9534 -1.6195 4.0825 9 6 2.2864 -0.4136 3.9915 10 17 1.8937 0.4747 5.4305 11 6 1.9283 0.0895 2.7380 12 6 1.2150 1.3792 2.6318 13 8 1.8433 2.4145 2.5276 14 7 -0.1323 1.4076 2.6506 15 6 -0.8396 2.6863 2.5459 16 6 -2.3489 2.4396 2.5915 17 6 -3.0764 3.7550 2.4832 18 1 -2.5181 4.6747 2.3906 19 6 -4.4548 3.7840 2.5023 20 7 -5.0896 4.9317 2.4072 21 14 -5.4204 2.1928 2.6617 22 1 -5.6543 1.8976 4.0982 23 1 -6.7250 2.3338 1.9665 24 1 -4.6494 1.0823 2.0473 25 1 -0.3634 0.6379 0.8057 26 1 -0.3634 0.3787 -0.9554 27 1 -0.3633 -1.0167 0.1497 28 1 3.1628 -2.3933 0.8020 29 1 3.7876 -3.2709 3.0133 30 1 3.2311 -2.0101 5.0504 31 1 -0.6338 0.5814 2.7334 32 1 -0.5510 3.3302 3.3766 33 1 -0.5791 3.1696 1.6042 34 1 -2.6372 1.7958 1.7605 35 1 -2.6097 1.9561 3.5330 36 1 -6.0593 4.9522 2.4203 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345158306.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:25 Heat of formation + Delta-G solvation = -100.853104 kcal Electronic energy + Delta-G solvation = -24206.291555 eV Core-core repulsion = 20422.281635 eV Total energy + Delta-G solvation = -3784.009920 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -41.59995 -39.76740 -38.23406 -37.71577 -37.13926 -36.83115 -34.89611 -33.19138 -32.32441 -31.64893 -30.38356 -27.23528 -25.13293 -24.41870 -22.72540 -22.04722 -20.29949 -19.47877 -18.99691 -18.30391 -17.81904 -17.35976 -17.08429 -16.51595 -16.41226 -16.23721 -16.17765 -15.98518 -15.03530 -14.77420 -14.74297 -14.59092 -14.19418 -14.01746 -13.73963 -13.36147 -13.30059 -13.20180 -13.08463 -13.01870 -12.88747 -12.44360 -12.29846 -12.18027 -12.14063 -11.85235 -11.75345 -11.51537 -11.19279 -10.77619 -10.60448 -10.22673 -10.09900 -8.27964 -6.35521 -1.09880 -0.60059 -0.28305 0.80799 1.14735 1.40423 1.42872 1.53660 1.65687 1.86338 2.07583 2.38123 2.67146 3.06387 3.07555 3.32830 3.63960 3.77534 3.92804 3.99587 4.09535 4.21301 4.24472 4.33023 4.40209 4.68184 4.73402 4.84633 4.85760 4.99037 4.99620 5.32790 5.39362 5.44096 5.61060 6.19399 6.28728 6.72227 6.92122 7.28860 8.88881 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.013180 B = 0.004327 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.888805 B = 6469.213138 C = 7517.065349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.654 4.654 2 S 2.478 3.522 3 O -0.967 6.967 4 O -0.950 6.950 5 C -0.627 4.627 6 C -0.020 4.020 7 C -0.091 4.091 8 C -0.051 4.051 9 C -0.041 4.041 10 Cl -0.056 7.056 11 C -0.045 4.045 12 C 0.526 3.474 13 O -0.528 6.528 14 N -0.707 5.707 15 C 0.138 3.862 16 C -0.015 4.015 17 C -0.538 4.538 18 H 0.028 0.972 19 C 0.005 3.995 20 N -0.951 5.951 21 Si 0.954 3.046 22 H -0.268 1.268 23 H -0.289 1.289 24 H -0.228 1.228 25 H 0.130 0.870 26 H 0.158 0.842 27 H 0.179 0.821 28 H 0.178 0.822 29 H 0.195 0.805 30 H 0.181 0.819 31 H 0.418 0.582 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.038 0.962 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.357 -24.984 1.347 28.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.661 3.339 3 O -0.965 6.965 4 O -0.947 6.947 5 C -0.714 4.714 6 C -0.038 4.038 7 C -0.110 4.110 8 C -0.070 4.070 9 C -0.069 4.069 10 Cl -0.027 7.027 11 C -0.050 4.050 12 C 0.309 3.691 13 O -0.403 6.403 14 N -0.362 5.362 15 C 0.015 3.985 16 C -0.053 4.053 17 C -0.576 4.576 18 H 0.047 0.953 19 C -0.192 4.192 20 N -0.591 5.591 21 Si 0.776 3.224 22 H -0.193 1.193 23 H -0.215 1.215 24 H -0.150 1.150 25 H 0.148 0.852 26 H 0.176 0.824 27 H 0.197 0.803 28 H 0.196 0.804 29 H 0.212 0.788 30 H 0.198 0.802 31 H 0.256 0.744 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.204 -23.786 0.767 28.240 hybrid contribution -1.338 0.261 1.034 1.711 sum 13.866 -23.525 1.801 27.367 Atomic orbital electron populations 1.30476 1.20415 1.15377 1.14462 1.05630 0.80122 0.73932 0.74194 1.93674 1.79087 1.37763 1.85934 1.93540 1.79114 1.61568 1.60465 1.30652 1.15341 1.07157 1.18262 1.21506 0.90103 0.90773 1.01433 1.21987 0.97647 1.01505 0.89841 1.21813 0.92294 0.90167 1.02685 1.21240 1.03212 0.96048 0.86405 1.98432 1.92672 1.75384 1.36242 1.19314 0.99267 0.92954 0.93480 1.18736 0.83193 0.89047 0.78075 1.90878 1.67514 1.34563 1.47362 1.46302 1.05205 1.11833 1.72846 1.21272 0.92524 0.83737 1.00991 1.19713 0.90406 0.96551 0.98634 1.21215 0.92072 0.93275 1.51037 0.95318 1.26059 0.98907 1.00436 0.93772 1.70076 1.09056 1.28184 1.51831 0.85614 0.77753 0.79849 0.79141 1.19307 1.21510 1.15048 0.85152 0.82409 0.80328 0.80436 0.78777 0.80181 0.74395 0.93192 0.92491 0.93447 0.94376 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -10.99 10.59 113.37 1.20 -9.79 16 2 S 2.48 59.14 5.26 -56.49 -0.30 58.85 16 3 O -0.97 -34.44 16.17 -122.04 -1.97 -36.41 16 4 O -0.95 -23.26 16.74 -127.65 -2.14 -25.39 16 5 C -0.63 -13.34 5.61 22.53 0.13 -13.21 16 6 C -0.02 -0.27 9.49 22.23 0.21 -0.06 16 7 C -0.09 -0.77 10.04 22.32 0.22 -0.54 16 8 C -0.05 -0.61 9.82 22.26 0.22 -0.39 16 9 C -0.04 -0.86 6.35 22.60 0.14 -0.72 16 10 Cl -0.06 -1.34 28.04 -2.72 -0.08 -1.42 16 11 C -0.05 -1.16 5.62 -20.07 -0.11 -1.27 16 12 C 0.53 17.51 4.04 86.77 0.35 17.86 16 13 O -0.53 -22.94 16.35 7.88 0.13 -22.81 16 14 N -0.71 -21.41 3.34 -466.05 -1.56 -22.96 16 15 C 0.14 5.35 5.55 86.38 0.48 5.83 16 16 C -0.02 -0.64 4.16 29.85 0.12 -0.51 16 17 C -0.54 -29.61 9.66 25.60 0.25 -29.36 16 18 H 0.03 1.79 7.99 -2.91 -0.02 1.77 16 19 C 0.01 0.30 5.47 84.66 0.46 0.76 16 20 N -0.95 -58.34 13.96 21.45 0.30 -58.04 16 21 Si 0.95 40.35 27.47 68.60 1.88 42.24 16 22 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 23 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.23 -8.18 6.54 99.48 0.65 -7.53 16 25 H 0.13 2.74 4.29 -2.39 -0.01 2.73 16 26 H 0.16 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.18 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.18 1.70 7.21 -2.91 -0.02 1.68 16 29 H 0.20 -0.14 8.06 -2.91 -0.02 -0.16 16 30 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 31 H 0.42 9.29 7.93 -92.71 -0.73 8.55 16 32 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 34 H 0.05 1.76 7.20 -2.38 -0.02 1.74 16 35 H 0.04 1.47 7.57 -2.39 -0.02 1.45 16 36 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -85.82 333.65 0.29 -85.52 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.35 Total: 11.82 kcal Atomic # 6 Polarization: -35.07 SS G_CDS: 3.68 Total: -31.39 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -1.26 Total: -81.00 kcal Atomic # 8 Polarization: -80.63 SS G_CDS: -3.98 Total: -84.62 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 1.88 Total: 42.24 kcal Atomic # 16 Polarization: 59.14 SS G_CDS: -0.30 Total: 58.85 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.42 kcal Total: -85.82 0.29 -85.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345158306.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.330 kcal (2) G-P(sol) polarization free energy of solvation -85.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds