Wall clock time and date at job start Tue Mar 31 2020 15:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47209 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46798 * 104.60780 * 3 2 1 5 5 C 1.36780 * 120.00050 * 263.31078 * 4 3 2 6 6 H 1.08004 * 120.00194 * 214.46552 * 5 4 3 7 7 C 1.39112 * 120.00531 * 34.46475 * 5 4 3 8 8 N 1.31324 * 119.99113 * 5.58074 * 7 5 4 9 9 Si 1.86796 * 120.00581 * 185.57897 * 7 5 4 10 10 H 1.48504 * 109.46961 * 89.99857 * 9 7 5 11 11 H 1.48496 * 109.47374 * 209.99909 * 9 7 5 12 12 H 1.48494 * 109.47111 * 330.00034 * 9 7 5 13 13 C 1.34781 * 119.99831 * 83.31146 * 4 3 2 14 14 O 1.21541 * 120.00298 * 5.26938 * 13 4 3 15 15 C 1.48190 * 119.99747 * 185.26215 * 13 4 3 16 16 C 1.41970 * 126.84855 * 175.48576 * 15 13 4 17 17 C 1.36699 * 103.81217 * 180.12081 * 16 15 13 18 18 C 1.47824 * 126.80334 * 179.97438 * 17 16 15 19 19 C 1.39577 * 120.15193 * 309.42490 * 18 17 16 20 20 C 1.37937 * 119.87261 * 180.27657 * 19 18 17 21 21 C 1.38392 * 120.16808 * 0.02562 * 20 19 18 22 22 C 1.38294 * 120.30954 * 359.97438 * 21 20 19 23 23 C 1.38125 * 120.12890 * 0.02562 * 22 21 20 24 24 Cl 1.73598 * 120.08419 * 179.97438 * 23 22 21 25 25 O 1.34475 * 106.38847 * 359.66599 * 17 16 15 26 26 N 1.20871 * 111.75255 * 0.22718 * 25 17 16 27 27 H 1.08991 * 109.46994 * 344.60657 * 3 2 1 28 28 H 1.09002 * 109.46840 * 224.60486 * 3 2 1 29 29 H 0.97000 * 119.99235 * 180.02562 * 8 7 5 30 30 H 1.07996 * 128.09625 * 0.05624 * 16 15 13 31 31 H 1.08002 * 120.06377 * 0.26188 * 19 18 17 32 32 H 1.07997 * 119.91204 * 179.97438 * 20 19 18 33 33 H 1.08001 * 119.84307 * 180.02562 * 21 20 19 34 34 H 1.08000 * 119.93566 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0962 0.3492 -1.3366 5 6 3.4547 -0.6380 -2.2128 6 1 4.2718 -0.4789 -2.9008 7 6 2.7668 -1.8472 -2.2178 8 7 1.7056 -2.0018 -1.4598 9 14 3.3524 -3.2506 -3.3025 10 1 4.3194 -4.0886 -2.5487 11 1 2.1900 -4.0804 -3.7090 12 1 4.0137 -2.6986 -4.5121 13 6 3.1920 1.6428 -1.7029 14 8 2.9656 2.5217 -0.8945 15 6 3.5737 1.9934 -3.0912 16 6 3.6313 3.2948 -3.6555 17 6 4.0287 3.0743 -4.9447 18 6 4.2506 4.0956 -5.9900 19 6 3.2720 5.0562 -6.2506 20 6 3.4827 6.0031 -7.2312 21 6 4.6610 6.0024 -7.9570 22 6 5.6355 5.0541 -7.7049 23 6 5.4376 4.1001 -6.7258 24 17 6.6614 2.9098 -6.4107 25 8 4.1845 1.7446 -5.0715 26 7 3.9301 1.1636 -4.0425 27 1 2.9718 -0.9899 0.2728 28 1 2.9710 0.7325 0.7217 29 1 1.2261 -2.8451 -1.4630 30 1 3.4115 4.2383 -3.1782 31 1 2.3515 5.0579 -5.6857 32 1 2.7258 6.7463 -7.4337 33 1 4.8206 6.7465 -8.7234 34 1 6.5529 5.0594 -8.2746 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355712406.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:59 Heat of formation + Delta-G solvation = 78.132289 kcal Electronic energy + Delta-G solvation = -24727.035572 eV Core-core repulsion = 20847.635841 eV Total energy + Delta-G solvation = -3879.399731 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.051 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -45.89860 -40.66641 -40.19595 -37.56079 -37.44495 -36.38646 -34.96402 -34.17569 -33.60639 -31.77450 -30.61731 -29.61165 -27.09706 -25.09380 -24.72810 -23.48292 -23.04089 -21.13844 -20.09786 -18.89583 -18.72301 -18.10729 -18.01616 -17.42548 -16.56703 -16.42286 -16.28822 -15.95505 -15.46083 -15.15674 -14.85556 -14.77823 -14.62284 -14.55081 -14.19323 -13.84272 -13.48752 -13.19623 -13.04596 -12.91290 -12.77271 -12.52209 -12.46651 -12.23031 -12.11590 -12.05882 -11.82374 -11.33063 -11.20782 -10.94804 -10.89293 -9.96567 -9.86931 -9.58398 -8.47568 -6.19303 -0.28770 0.21796 0.37794 0.82560 1.11126 1.42683 1.44980 1.55094 1.76468 2.04059 2.20786 2.31300 2.33856 2.64592 2.75156 2.98723 3.29172 3.57179 3.61077 3.79750 4.04132 4.11710 4.23685 4.31785 4.35632 4.43655 4.57181 4.65345 4.74066 4.88098 4.95656 5.18962 5.32035 5.42930 5.43892 5.58839 5.79850 6.29599 6.90159 6.99708 7.12316 7.34034 7.62413 8.55669 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.015686 B = 0.003767 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.546540 B = 7431.965868 C = 8489.730776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C 0.266 3.734 3 C 0.232 3.768 4 N -0.427 5.427 5 C -0.340 4.340 6 H 0.116 0.884 7 C 0.012 3.988 8 N -0.889 5.889 9 Si 0.986 3.014 10 H -0.259 1.259 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.526 3.474 14 O -0.604 6.604 15 C -0.023 4.023 16 C -0.168 4.168 17 C -0.005 4.005 18 C -0.035 4.035 19 C -0.083 4.083 20 C -0.107 4.107 21 C -0.082 4.082 22 C -0.112 4.112 23 C -0.029 4.029 24 Cl -0.072 7.072 25 O 0.124 5.876 26 N -0.320 5.320 27 H 0.129 0.871 28 H 0.117 0.883 29 H 0.276 0.724 30 H 0.192 0.808 31 H 0.144 0.856 32 H 0.168 0.832 33 H 0.174 0.826 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.517 14.183 -14.457 22.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.192 5.192 2 C -0.051 4.051 3 C 0.106 3.894 4 N -0.146 5.146 5 C -0.468 4.468 6 H 0.133 0.867 7 C -0.192 4.192 8 N -0.526 5.526 9 Si 0.809 3.191 10 H -0.184 1.184 11 H -0.213 1.213 12 H -0.190 1.190 13 C 0.315 3.685 14 O -0.489 6.489 15 C -0.180 4.180 16 C -0.190 4.190 17 C -0.068 4.068 18 C -0.037 4.037 19 C -0.102 4.102 20 C -0.125 4.125 21 C -0.100 4.100 22 C -0.130 4.130 23 C -0.056 4.056 24 Cl -0.043 7.043 25 O 0.046 5.954 26 N -0.019 5.019 27 H 0.146 0.854 28 H 0.134 0.866 29 H 0.086 0.914 30 H 0.210 0.790 31 H 0.162 0.838 32 H 0.186 0.814 33 H 0.191 0.809 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 7.830 12.968 -13.924 20.575 hybrid contribution 0.285 -0.725 0.167 0.797 sum 8.115 12.242 -13.757 20.124 Atomic orbital electron populations 1.80807 1.14616 1.13499 1.10279 1.29421 0.95647 0.89075 0.90948 1.18762 0.80491 1.04210 0.85896 1.43545 1.54301 1.04453 1.12281 1.20216 1.16464 0.93311 1.16815 0.86664 1.26213 0.93899 1.01477 0.97614 1.69693 1.17032 1.26882 1.39016 0.85007 0.77799 0.77390 0.78874 1.18399 1.21335 1.19031 1.17426 0.82661 0.83163 0.85249 1.90624 1.57748 1.48478 1.52092 1.23238 1.06795 0.91615 0.96353 1.22694 1.05184 0.98450 0.92638 1.22604 1.04008 0.84637 0.95540 1.17607 0.95530 0.94921 0.95597 1.21465 0.97605 0.93114 0.98010 1.21596 0.98735 0.98077 0.94056 1.21754 0.91881 0.97393 0.98993 1.21351 1.01996 0.93575 0.96097 1.21307 0.90418 0.94593 0.99299 1.98406 1.54033 1.56815 1.95095 1.85001 1.62437 1.17656 1.30287 1.74629 1.14162 1.19810 0.93259 0.85358 0.86586 0.91417 0.79042 0.83817 0.81412 0.80884 0.82366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -26.95 18.54 20.01 0.37 -26.58 16 2 C 0.27 13.21 13.08 89.44 1.17 14.38 16 3 C 0.23 10.28 5.10 84.58 0.43 10.72 16 4 N -0.43 -20.96 2.56 -648.35 -1.66 -22.62 16 5 C -0.34 -16.87 8.16 84.13 0.69 -16.19 16 6 H 0.12 5.76 5.73 -2.91 -0.02 5.75 16 7 C 0.01 0.59 5.16 84.98 0.44 1.03 16 8 N -0.89 -45.57 9.38 21.69 0.20 -45.36 16 9 Si 0.99 40.09 29.56 68.60 2.03 42.12 16 10 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 11 H -0.29 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 13 C 0.53 25.82 7.57 86.89 0.66 26.48 16 14 O -0.60 -30.70 16.61 -3.84 -0.06 -30.76 16 15 C -0.02 -1.04 6.90 42.81 0.30 -0.74 16 16 C -0.17 -5.95 10.89 22.83 0.25 -5.71 16 17 C 0.00 -0.16 6.14 24.45 0.15 0.00 16 18 C -0.03 -0.83 5.82 -20.07 -0.12 -0.95 16 19 C -0.08 -1.47 9.73 22.52 0.22 -1.25 16 20 C -0.11 -1.15 10.03 22.23 0.22 -0.93 16 21 C -0.08 -0.76 10.04 22.32 0.22 -0.54 16 22 C -0.11 -1.56 9.82 22.26 0.22 -1.34 16 23 C -0.03 -0.63 6.35 22.59 0.14 -0.48 16 24 Cl -0.07 -1.82 27.50 -2.72 -0.07 -1.89 16 25 O 0.12 4.68 10.51 67.51 0.71 5.39 16 26 N -0.32 -14.04 8.88 -48.97 -0.44 -14.47 16 27 H 0.13 5.41 7.16 -2.39 -0.02 5.39 16 28 H 0.12 4.53 7.56 -2.39 -0.02 4.52 16 29 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 30 H 0.19 5.89 8.06 -2.91 -0.02 5.87 16 31 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 33 H 0.17 0.32 8.06 -2.91 -0.02 0.30 16 34 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -68.11 328.68 7.25 -60.86 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 1.18 Total: 8.84 kcal Atomic # 6 Polarization: 19.48 SS G_CDS: 4.99 Total: 24.47 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -1.52 Total: -109.03 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: 0.65 Total: -25.37 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.07 Total: -1.89 kcal Total: -68.11 7.25 -60.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355712406.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.993 kcal (2) G-P(sol) polarization free energy of solvation -68.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds