Wall clock time and date at job start Tue Mar 31 2020 16:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.38583 * 126.98936 * 2 1 4 4 C 1.38180 * 126.54859 * 0.02562 * 3 2 1 5 5 H 1.07998 * 119.99881 * 0.02562 * 4 3 2 6 6 C 1.46350 * 120.00251 * 179.97438 * 4 3 2 7 7 N 1.29664 * 119.99935 * 180.02562 * 6 4 3 8 8 Si 1.86802 * 120.00112 * 359.97438 * 6 4 3 9 9 H 1.48496 * 109.46934 * 89.99925 * 8 6 4 10 10 H 1.48499 * 109.47079 * 209.99967 * 8 6 4 11 11 H 1.48502 * 109.47023 * 329.99905 * 8 6 4 12 12 N 1.34193 * 106.91465 * 180.02562 * 3 2 1 13 13 N 1.28585 * 109.40010 * 359.72026 * 12 3 2 14 14 C 1.33927 * 109.96469 * 0.45818 * 13 12 3 15 15 S 1.71199 * 126.14852 * 179.80941 * 14 13 12 16 16 C 1.76203 * 99.99695 * 354.54794 * 15 14 13 17 17 C 1.39270 * 119.93235 * 102.65548 * 16 15 14 18 18 C 1.37627 * 120.06941 * 180.02562 * 17 16 15 19 19 C 1.39828 * 119.92818 * 0.23080 * 18 17 16 20 20 C 1.43202 * 120.06533 * 179.74681 * 19 18 17 21 21 N 8.90473 * 138.16671 * 186.05866 * 2 1 3 22 22 C 1.39790 * 119.86838 * 359.47101 * 19 18 17 23 23 C 1.37668 * 119.93006 * 0.55437 * 22 19 18 24 24 N 1.48019 * 119.96502 * 179.70556 * 23 22 19 25 25 O 1.31701 * 119.99990 * 0.02562 * 24 23 22 26 26 O 1.31701 * 119.99721 * 180.02562 * 24 23 22 27 27 H 1.09004 * 109.47137 * 269.99937 * 1 2 3 28 28 H 1.08999 * 109.47326 * 29.99862 * 1 2 3 29 29 H 1.09000 * 109.47192 * 150.00114 * 1 2 3 30 30 H 0.97001 * 120.00199 * 180.02562 * 7 6 4 31 31 H 1.07998 * 119.96700 * 359.97438 * 17 16 15 32 32 H 1.07993 * 120.03606 * 179.97438 * 18 17 16 33 33 H 1.08003 * 120.03851 * 180.29361 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2989 1.1069 0.0000 4 6 1.9073 2.4321 0.0005 5 1 0.8573 2.6849 0.0014 6 6 2.9154 3.4931 0.0010 7 7 2.5478 4.7365 0.0020 8 14 4.7315 3.0559 0.0017 9 1 5.2133 2.9402 -1.3982 10 1 5.4962 4.1188 0.7021 11 1 4.9287 1.7611 0.7017 12 7 3.5593 0.6463 -0.0006 13 7 3.5441 -0.6394 0.0050 14 6 2.2801 -1.0819 -0.0006 15 16 1.7836 -2.7203 -0.0009 16 6 3.3489 -3.5142 -0.1572 17 6 3.9484 -4.0942 0.9581 18 6 5.1711 -4.7145 0.8394 19 6 5.8139 -4.7578 -0.4017 20 6 7.0888 -5.3978 -0.5274 21 7 8.0999 -5.9060 -0.6269 22 6 5.2068 -4.1802 -1.5206 23 6 3.9838 -3.5607 -1.3953 24 7 3.3433 -2.9431 -2.5783 25 8 3.9432 -2.9870 -3.7499 26 8 2.1735 -2.3498 -2.4591 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 3.2160 5.4398 0.0019 31 1 3.4535 -4.0564 1.9173 32 1 5.6357 -5.1638 1.7047 33 1 5.6986 -4.2162 -2.4814 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360089728.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:58 Heat of formation + Delta-G solvation = 172.151773 kcal Electronic energy + Delta-G solvation = -24993.337820 eV Core-core repulsion = 21152.351537 eV Total energy + Delta-G solvation = -3840.986283 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.053 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.78239 -40.41062 -38.30827 -36.79333 -34.21551 -33.78655 -33.58713 -32.27615 -32.02830 -30.31474 -26.87788 -26.70219 -25.57856 -24.67209 -22.84939 -21.61732 -20.48106 -19.88902 -18.15677 -17.97144 -17.73070 -17.04911 -16.17654 -16.01501 -15.77221 -15.29388 -14.96723 -14.68189 -14.49058 -14.45053 -13.86074 -13.36195 -13.16443 -12.99661 -12.81774 -12.57818 -12.48950 -12.27585 -11.69608 -11.66187 -11.51719 -11.13047 -11.08933 -10.99721 -10.71103 -10.36590 -9.93057 -9.76116 -9.62413 -9.53256 -9.09374 -8.72980 -7.93112 -7.18606 -7.00817 -4.77503 -0.76165 -0.01884 0.94949 1.12140 1.44639 2.15244 2.20563 2.60150 2.83213 3.17654 3.26036 3.28660 3.32978 3.61608 3.93544 3.97732 4.00161 4.21864 4.37330 4.43787 4.48335 4.97615 4.98554 5.08980 5.35893 5.41127 5.44732 5.69914 5.78199 5.98567 6.00466 6.20363 6.68798 6.77010 6.93511 6.97824 7.35124 7.63861 7.85612 8.30561 8.54522 9.74130 10.05405 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.013842 B = 0.004449 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.374683 B = 6291.755095 C = 7020.767649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.502 5.502 3 C 0.337 3.663 4 C -0.426 4.426 5 H 0.096 0.904 6 C 0.104 3.896 7 N -0.774 5.774 8 Si 0.906 3.094 9 H -0.272 1.272 10 H -0.306 1.306 11 H -0.170 1.170 12 N -0.411 5.411 13 N -0.268 5.268 14 C 0.009 3.991 15 S 0.160 5.840 16 C -0.040 4.040 17 C -0.060 4.060 18 C -0.028 4.028 19 C -0.009 4.009 20 C 0.255 3.745 21 N -0.395 5.395 22 C -0.012 4.012 23 C 0.046 3.954 24 N -0.024 5.024 25 O -0.204 6.204 26 O -0.110 6.110 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.297 0.703 31 H 0.167 0.833 32 H 0.157 0.843 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.349 -16.116 3.779 16.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.203 5.203 3 C 0.100 3.900 4 C -0.465 4.465 5 H 0.114 0.886 6 C -0.126 4.126 7 N -0.396 5.396 8 Si 0.732 3.268 9 H -0.197 1.197 10 H -0.235 1.235 11 H -0.092 1.092 12 N -0.265 5.265 13 N -0.116 5.116 14 C -0.362 4.362 15 S 0.397 5.603 16 C -0.155 4.155 17 C -0.082 4.082 18 C -0.051 4.051 19 C -0.014 4.014 20 C -0.061 4.061 21 N -0.069 5.069 22 C -0.035 4.035 23 C -0.045 4.045 24 N 0.453 4.547 25 O -0.384 6.384 26 O -0.314 6.314 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.184 0.816 32 H 0.175 0.825 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.877 -17.399 4.142 17.907 hybrid contribution -0.179 1.514 -0.836 1.739 sum 0.698 -15.885 3.306 16.240 Atomic orbital electron populations 1.21590 0.77669 1.03426 1.01875 1.45156 1.06137 1.04241 1.64735 1.21330 0.85060 0.88964 0.94606 1.18981 0.95960 0.85138 1.46443 0.88569 1.27337 1.03781 0.93192 0.88337 1.68959 1.39680 1.01550 1.29441 0.86367 0.77501 0.81219 0.81725 1.19719 1.23474 1.09245 1.75474 1.14657 1.00290 1.36060 1.74857 1.14411 1.06885 1.15425 1.24691 0.92356 0.94276 1.24904 1.82224 0.99057 0.89584 1.89436 1.22230 1.01897 0.98716 0.92665 1.21500 0.93806 0.95163 0.97730 1.21595 0.93649 0.93674 0.96172 1.15733 0.89562 1.01991 0.94134 1.25189 0.92515 0.93833 0.94537 1.81303 1.10554 1.08765 1.06326 1.20915 0.91239 0.91130 1.00250 1.20078 0.96137 1.03425 0.84894 1.50197 1.02126 0.99341 1.03012 1.96252 1.64964 1.67199 1.10008 1.96426 1.01750 1.39536 1.93655 0.92224 0.89929 0.91048 0.89108 0.81553 0.82526 0.81846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.64 10.80 59.85 0.65 2.29 16 2 N -0.50 -10.97 3.23 -124.73 -0.40 -11.37 16 3 C 0.34 8.56 7.32 -154.23 -1.13 7.43 16 4 C -0.43 -11.03 9.86 -36.34 -0.36 -11.38 16 5 H 0.10 2.46 7.46 -52.49 -0.39 2.07 16 6 C 0.10 2.66 5.69 -15.21 -0.09 2.57 16 7 N -0.77 -19.49 13.89 55.97 0.78 -18.71 16 8 Si 0.91 21.56 26.74 -169.99 -4.55 17.01 16 9 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.31 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.17 -4.26 5.23 56.52 0.30 -3.97 16 12 N -0.41 -10.86 6.96 31.18 0.22 -10.64 16 13 N -0.27 -6.46 11.57 29.93 0.35 -6.11 16 14 C 0.01 0.18 6.65 -87.06 -0.58 -0.40 16 15 S 0.16 2.42 18.57 -107.50 -2.00 0.43 16 16 C -0.04 -0.53 4.89 -38.83 -0.19 -0.72 16 17 C -0.06 -0.55 9.77 -39.42 -0.39 -0.93 16 18 C -0.03 -0.20 9.75 -39.21 -0.38 -0.58 16 19 C -0.01 -0.08 5.74 -106.80 -0.61 -0.69 16 20 C 0.26 2.54 15.33 -22.47 -0.34 2.20 16 21 N -0.39 -4.76 18.54 41.84 0.78 -3.99 16 22 C -0.01 -0.14 9.27 -39.21 -0.36 -0.50 16 23 C 0.05 0.66 6.89 -79.79 -0.55 0.11 16 24 N -0.02 -0.43 4.98 34.04 0.17 -0.26 16 25 O -0.20 -3.82 19.14 -31.57 -0.60 -4.43 16 26 O -0.11 -2.17 15.39 -31.57 -0.49 -2.66 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.08 1.36 7.49 -51.93 -0.39 0.97 16 29 H 0.07 1.02 7.75 -51.93 -0.40 0.62 16 30 H 0.30 6.78 8.27 -40.82 -0.34 6.44 16 31 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.16 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.16 1.71 7.57 -52.48 -0.40 1.31 16 LS Contribution 323.23 15.07 4.87 4.87 Total: -1.00 -33.36 323.23 -7.30 -40.66 By element: Atomic # 1 Polarization: -2.11 SS G_CDS: -2.09 Total: -4.20 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -4.33 Total: -0.61 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 1.88 Total: -51.08 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -1.09 Total: -7.09 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.55 Total: 17.01 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -2.00 Total: 0.43 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.36 -7.30 -40.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360089728.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.815 kcal (2) G-P(sol) polarization free energy of solvation -33.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds