Wall clock time and date at job start Tue Mar 31 2020 16:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.38583 * 126.98936 * 2 1 4 4 C 1.38180 * 126.54859 * 0.02562 * 3 2 1 5 5 H 1.07998 * 119.99881 * 0.02562 * 4 3 2 6 6 C 1.46350 * 120.00251 * 179.97438 * 4 3 2 7 7 N 1.29664 * 119.99935 * 180.02562 * 6 4 3 8 8 Si 1.86802 * 120.00112 * 359.97438 * 6 4 3 9 9 H 1.48496 * 109.46934 * 89.99925 * 8 6 4 10 10 H 1.48499 * 109.47079 * 209.99967 * 8 6 4 11 11 H 1.48502 * 109.47023 * 329.99905 * 8 6 4 12 12 N 1.34193 * 106.91465 * 180.02562 * 3 2 1 13 13 N 1.28585 * 109.40010 * 359.72026 * 12 3 2 14 14 C 1.33927 * 109.96469 * 0.45818 * 13 12 3 15 15 S 1.71199 * 126.14852 * 179.80941 * 14 13 12 16 16 C 1.76203 * 99.99695 * 354.54794 * 15 14 13 17 17 C 1.39270 * 119.93235 * 102.65548 * 16 15 14 18 18 C 1.37627 * 120.06941 * 180.02562 * 17 16 15 19 19 C 1.39828 * 119.92818 * 0.23080 * 18 17 16 20 20 C 1.43202 * 120.06533 * 179.74681 * 19 18 17 21 21 N 8.90473 * 138.16671 * 186.05866 * 2 1 3 22 22 C 1.39790 * 119.86838 * 359.47101 * 19 18 17 23 23 C 1.37668 * 119.93006 * 0.55437 * 22 19 18 24 24 N 1.48019 * 119.96502 * 179.70556 * 23 22 19 25 25 O 1.31701 * 119.99990 * 0.02562 * 24 23 22 26 26 O 1.31701 * 119.99721 * 180.02562 * 24 23 22 27 27 H 1.09004 * 109.47137 * 269.99937 * 1 2 3 28 28 H 1.08999 * 109.47326 * 29.99862 * 1 2 3 29 29 H 1.09000 * 109.47192 * 150.00114 * 1 2 3 30 30 H 0.97001 * 120.00199 * 180.02562 * 7 6 4 31 31 H 1.07998 * 119.96700 * 359.97438 * 17 16 15 32 32 H 1.07993 * 120.03606 * 179.97438 * 18 17 16 33 33 H 1.08003 * 120.03851 * 180.29361 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2989 1.1069 0.0000 4 6 1.9073 2.4321 0.0005 5 1 0.8573 2.6849 0.0014 6 6 2.9154 3.4931 0.0010 7 7 2.5478 4.7365 0.0020 8 14 4.7315 3.0559 0.0017 9 1 5.2133 2.9402 -1.3982 10 1 5.4962 4.1188 0.7021 11 1 4.9287 1.7611 0.7017 12 7 3.5593 0.6463 -0.0006 13 7 3.5441 -0.6394 0.0050 14 6 2.2801 -1.0819 -0.0006 15 16 1.7836 -2.7203 -0.0009 16 6 3.3489 -3.5142 -0.1572 17 6 3.9484 -4.0942 0.9581 18 6 5.1711 -4.7145 0.8394 19 6 5.8139 -4.7578 -0.4017 20 6 7.0888 -5.3978 -0.5274 21 7 8.0999 -5.9060 -0.6269 22 6 5.2068 -4.1802 -1.5206 23 6 3.9838 -3.5607 -1.3953 24 7 3.3433 -2.9431 -2.5783 25 8 3.9432 -2.9870 -3.7499 26 8 2.1735 -2.3498 -2.4591 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 3.2160 5.4398 0.0019 31 1 3.4535 -4.0564 1.9173 32 1 5.6357 -5.1638 1.7047 33 1 5.6986 -4.2162 -2.4814 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360089728.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:54 Heat of formation + Delta-G solvation = 151.860515 kcal Electronic energy + Delta-G solvation = -24994.217715 eV Core-core repulsion = 21152.351537 eV Total energy + Delta-G solvation = -3841.866178 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.053 amu Computer time = 5.82 seconds Orbital eigenvalues (eV) -42.53761 -41.40592 -39.51870 -37.70854 -35.65181 -35.57197 -35.27895 -33.27128 -32.94576 -32.11751 -28.40869 -27.94229 -27.23805 -25.68765 -23.82785 -23.33688 -22.22790 -20.92603 -19.64993 -19.29017 -19.16289 -18.06258 -17.70512 -17.19830 -17.03608 -16.79276 -16.56691 -16.17999 -15.49230 -15.35899 -14.98365 -14.81483 -14.27079 -14.23611 -14.02422 -13.99882 -13.70830 -13.50897 -13.28749 -13.15574 -13.06674 -12.77555 -12.63308 -12.41993 -12.15043 -11.82056 -11.56112 -11.41402 -10.79687 -10.77107 -10.60345 -10.42866 -9.76915 -9.08376 -8.41043 -6.62898 -1.99691 -0.97004 -0.12311 -0.01488 0.33271 0.96573 1.02648 1.36682 1.40134 1.48056 1.53114 1.71270 2.10191 2.31749 2.37408 2.40188 2.49661 3.05245 3.06401 3.44224 3.50863 3.65036 4.08507 4.09866 4.27031 4.47280 4.48939 4.55608 4.58674 4.67719 4.75528 4.86472 5.02818 5.12603 5.52055 5.57922 5.92299 5.96304 6.16228 6.41305 6.76769 7.90101 8.27357 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.013842 B = 0.004449 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.374683 B = 6291.755095 C = 7020.767649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.506 5.506 3 C 0.321 3.679 4 C -0.457 4.457 5 H 0.087 0.913 6 C 0.082 3.918 7 N -0.797 5.797 8 Si 0.954 3.046 9 H -0.293 1.293 10 H -0.289 1.289 11 H -0.189 1.189 12 N -0.446 5.446 13 N -0.310 5.310 14 C 0.034 3.966 15 S 0.201 5.799 16 C -0.067 4.067 17 C -0.045 4.045 18 C 0.011 3.989 19 C 0.005 3.995 20 C 0.280 3.720 21 N -0.425 5.425 22 C -0.010 4.010 23 C 0.020 3.980 24 N -0.018 5.018 25 O -0.222 6.222 26 O -0.157 6.157 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.307 0.693 31 H 0.204 0.796 32 H 0.210 0.790 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.731 -19.381 5.943 20.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.205 5.205 3 C 0.080 3.920 4 C -0.498 4.498 5 H 0.105 0.895 6 C -0.146 4.146 7 N -0.421 5.421 8 Si 0.780 3.220 9 H -0.220 1.220 10 H -0.218 1.218 11 H -0.112 1.112 12 N -0.297 5.297 13 N -0.155 5.155 14 C -0.339 4.339 15 S 0.436 5.564 16 C -0.182 4.182 17 C -0.066 4.066 18 C -0.011 4.011 19 C 0.000 4.000 20 C -0.036 4.036 21 N -0.100 5.100 22 C -0.033 4.033 23 C -0.071 4.071 24 N 0.453 4.547 25 O -0.403 6.403 26 O -0.354 6.354 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.119 0.881 31 H 0.221 0.779 32 H 0.227 0.773 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 1.454 -20.637 6.313 21.630 hybrid contribution -0.286 2.020 -1.439 2.496 sum 1.168 -18.618 4.874 19.280 Atomic orbital electron populations 1.21934 0.74908 1.04586 1.03842 1.45579 1.08034 1.03829 1.63092 1.21406 0.85718 0.89647 0.95264 1.18948 0.95631 0.85846 1.49331 0.89516 1.27677 1.05154 0.93326 0.88462 1.68942 1.40515 1.01807 1.30833 0.85676 0.75930 0.80407 0.80014 1.21995 1.21762 1.11207 1.75345 1.15486 1.01701 1.37174 1.74762 1.15896 1.05985 1.18887 1.25821 0.91672 0.96975 1.19440 1.82037 1.00452 0.85032 1.88869 1.22530 1.01762 1.00329 0.93609 1.22036 0.93911 0.93080 0.97549 1.22212 0.91975 0.90270 0.96642 1.15748 0.89002 1.01054 0.94236 1.25029 0.92054 0.92957 0.93561 1.81361 1.11541 1.09835 1.07277 1.21058 0.90180 0.90556 1.01531 1.20368 0.97488 1.05289 0.83980 1.50677 1.01788 0.98396 1.03857 1.96226 1.64888 1.67632 1.11588 1.96412 1.03190 1.42046 1.93727 0.89743 0.90239 0.88481 0.88133 0.77870 0.77294 0.81450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.90 10.80 127.77 1.38 4.28 16 2 N -0.51 -22.07 3.23 -548.54 -1.77 -23.84 16 3 C 0.32 16.70 7.32 132.43 0.97 17.67 16 4 C -0.46 -24.58 9.86 24.37 0.24 -24.34 16 5 H 0.09 4.64 7.46 -2.91 -0.02 4.62 16 6 C 0.08 4.30 5.69 87.12 0.50 4.80 16 7 N -0.80 -41.13 13.89 23.18 0.32 -40.80 16 8 Si 0.95 46.12 26.74 68.60 1.83 47.95 16 9 H -0.29 -14.96 7.11 99.48 0.71 -14.25 16 10 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.19 -9.68 5.23 99.48 0.52 -9.16 16 12 N -0.45 -23.99 6.96 -55.28 -0.38 -24.38 16 13 N -0.31 -14.89 11.57 -59.21 -0.69 -15.58 16 14 C 0.03 1.39 6.65 179.10 1.19 2.58 16 15 S 0.20 5.62 18.57 -56.49 -1.05 4.58 16 16 C -0.07 -1.59 4.89 22.76 0.11 -1.47 16 17 C -0.04 -0.56 9.77 22.37 0.22 -0.34 16 18 C 0.01 0.09 9.75 22.51 0.22 0.31 16 19 C 0.00 0.06 5.74 -21.27 -0.12 -0.06 16 20 C 0.28 4.48 15.33 88.33 1.35 5.83 16 21 N -0.43 -8.98 18.54 19.00 0.35 -8.63 16 22 C -0.01 -0.20 9.27 22.51 0.21 0.01 16 23 C 0.02 0.54 6.89 36.48 0.25 0.79 16 24 N -0.02 -0.66 4.98 -46.22 -0.23 -0.89 16 25 O -0.22 -8.48 19.14 3.51 0.07 -8.42 16 26 O -0.16 -6.32 15.39 3.51 0.05 -6.26 16 27 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 28 H 0.08 2.63 7.49 -2.39 -0.02 2.61 16 29 H 0.10 2.62 7.75 -2.39 -0.02 2.60 16 30 H 0.31 14.23 8.27 -92.71 -0.77 13.46 16 31 H 0.20 1.16 8.06 -2.91 -0.02 1.14 16 32 H 0.21 -0.28 8.06 -2.91 -0.02 -0.31 16 33 H 0.17 3.25 7.57 -2.91 -0.02 3.23 16 Total: -1.00 -78.18 323.23 6.05 -72.13 By element: Atomic # 1 Polarization: -6.95 SS G_CDS: 1.02 Total: -5.93 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 6.52 Total: 10.06 kcal Atomic # 7 Polarization: -111.72 SS G_CDS: -2.40 Total: -114.11 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: 0.12 Total: -14.68 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.83 Total: 47.95 kcal Atomic # 16 Polarization: 5.62 SS G_CDS: -1.05 Total: 4.58 kcal Total: -78.18 6.05 -72.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360089728.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.995 kcal (2) G-P(sol) polarization free energy of solvation -78.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.82 seconds