Wall clock time and date at job start Tue Mar 31 2020 16:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.38586 * 126.99520 * 2 1 4 4 C 1.38190 * 126.53892 * 359.97438 * 3 2 1 5 5 H 1.07998 * 120.00498 * 0.02562 * 4 3 2 6 6 C 1.46348 * 120.00156 * 179.97438 * 4 3 2 7 7 N 1.29663 * 119.99841 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00458 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47350 * 89.99844 * 8 6 4 10 10 H 1.48500 * 109.47193 * 210.00222 * 8 6 4 11 11 H 1.48501 * 109.46795 * 330.00123 * 8 6 4 12 12 N 1.34182 * 106.92138 * 180.02562 * 3 2 1 13 13 N 1.28584 * 109.39637 * 359.75179 * 12 3 2 14 14 C 1.33915 * 109.97177 * 0.40955 * 13 12 3 15 15 S 1.71195 * 126.15262 * 179.85354 * 14 13 12 16 16 C 1.76197 * 99.99826 * 354.53504 * 15 14 13 17 17 C 1.38952 * 120.17776 * 103.86251 * 16 15 14 18 18 C 1.38019 * 120.06408 * 180.29450 * 17 16 15 19 19 C 1.38576 * 120.41931 * 359.45718 * 18 17 16 20 20 N 1.48021 * 119.82283 * 180.29573 * 19 18 17 21 21 O 1.31695 * 119.99940 * 359.97438 * 20 19 18 22 22 O 1.31699 * 119.99886 * 179.97438 * 20 19 18 23 23 C 1.37867 * 120.35449 * 0.26678 * 19 18 17 24 24 C 1.39658 * 119.92576 * 0.02562 * 23 19 18 25 25 C 1.43209 * 120.20531 * 180.02562 * 24 23 19 26 26 N 4.48088 * 108.99709 * 234.66008 * 2 1 3 27 27 H 1.08997 * 109.47363 * 269.99940 * 1 2 3 28 28 H 1.09002 * 109.46906 * 29.99979 * 1 2 3 29 29 H 1.09002 * 109.46905 * 149.99778 * 1 2 3 30 30 H 0.97000 * 120.00095 * 179.97438 * 7 6 4 31 31 H 1.07997 * 119.96821 * 0.02954 * 17 16 15 32 32 H 1.07996 * 119.78986 * 179.72369 * 18 17 16 33 33 H 1.08006 * 120.03685 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2990 1.1069 0.0000 4 6 1.9073 2.4321 -0.0005 5 1 0.8573 2.6849 -0.0005 6 6 2.9153 3.4931 0.0001 7 7 4.1759 3.1896 0.0007 8 14 2.3859 5.2845 0.0002 9 1 2.2449 5.7590 1.4002 10 1 3.4087 6.1029 -0.6993 11 1 1.0831 5.4156 -0.7004 12 7 3.5593 0.6463 -0.0006 13 7 3.5441 -0.6394 0.0043 14 6 2.2801 -1.0819 -0.0006 15 16 1.7837 -2.7203 -0.0004 16 6 3.3488 -3.5142 -0.1576 17 6 3.9406 -4.1163 0.9461 18 6 5.1694 -4.7322 0.8218 19 6 5.8168 -4.7656 -0.4030 20 7 7.1313 -5.4354 -0.5228 21 8 7.6828 -5.9972 0.5330 22 8 7.7494 -5.4696 -1.6852 23 6 5.2429 -4.1787 -1.5106 24 6 4.0027 -3.5461 -1.4000 25 6 3.4008 -2.9351 -2.5468 26 7 2.9236 -2.4507 -3.4561 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 4.8440 3.8928 0.0007 31 1 3.4404 -4.0985 1.9031 32 1 5.6273 -5.1949 1.6835 33 1 5.7522 -4.2073 -2.4626 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360093389.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:41 Heat of formation + Delta-G solvation = 159.345107 kcal Electronic energy + Delta-G solvation = -24273.428375 eV Core-core repulsion = 20431.886754 eV Total energy + Delta-G solvation = -3841.541622 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.053 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -40.57878 -40.45762 -38.53101 -36.45250 -34.59609 -33.79361 -33.53951 -32.28215 -31.99705 -29.67567 -27.11897 -26.67165 -25.47672 -24.61065 -22.94243 -21.21946 -20.68630 -19.99650 -18.30990 -17.93980 -17.62287 -17.23079 -16.18098 -16.05871 -15.88442 -15.41728 -14.86034 -14.68736 -14.42720 -14.25287 -13.54496 -13.40547 -13.24526 -12.80071 -12.66218 -12.48129 -12.41854 -12.12781 -11.64437 -11.50516 -11.47144 -11.35434 -11.21086 -11.05050 -10.82361 -10.58616 -9.95449 -9.92764 -9.75621 -9.60324 -9.03064 -8.76140 -8.60367 -7.19849 -6.97941 -4.71709 -0.98914 0.22383 0.65004 0.84805 1.48945 2.34797 2.59924 2.65727 2.73203 2.90563 2.94190 3.15948 3.37274 3.58319 3.66810 4.04194 4.04750 4.15932 4.27109 4.43367 4.61103 4.99852 5.07221 5.13397 5.26013 5.36925 5.48055 5.56636 5.72112 5.88438 5.91392 6.48068 6.56764 6.64204 6.94039 7.31306 7.40947 7.71193 7.96827 8.30466 8.71360 9.91917 10.39314 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.015821 B = 0.003438 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.320330 B = 8143.165529 C = 8833.453639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.509 5.509 3 C 0.347 3.653 4 C -0.450 4.450 5 H 0.089 0.911 6 C 0.079 3.921 7 N -0.706 5.706 8 Si 0.927 3.073 9 H -0.265 1.265 10 H -0.272 1.272 11 H -0.258 1.258 12 N -0.338 5.338 13 N -0.264 5.264 14 C -0.032 4.032 15 S 0.106 5.894 16 C -0.017 4.017 17 C -0.061 4.061 18 C -0.034 4.034 19 C 0.011 3.989 20 N -0.018 5.018 21 O -0.162 6.162 22 O -0.166 6.166 23 C -0.014 4.014 24 C 0.038 3.962 25 C 0.250 3.750 26 N -0.372 5.372 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.288 0.712 31 H 0.168 0.832 32 H 0.167 0.833 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.153 -11.489 2.562 12.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.211 5.211 3 C 0.109 3.891 4 C -0.489 4.489 5 H 0.107 0.893 6 C -0.153 4.153 7 N -0.326 5.326 8 Si 0.749 3.251 9 H -0.189 1.189 10 H -0.197 1.197 11 H -0.182 1.182 12 N -0.190 5.190 13 N -0.114 5.114 14 C -0.400 4.400 15 S 0.341 5.659 16 C -0.132 4.132 17 C -0.082 4.082 18 C -0.055 4.055 19 C -0.076 4.076 20 N 0.463 4.537 21 O -0.358 6.358 22 O -0.360 6.360 23 C -0.037 4.037 24 C 0.031 3.969 25 C -0.067 4.067 26 N -0.046 5.046 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.186 0.814 32 H 0.184 0.816 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.883 -10.835 1.282 11.954 hybrid contribution 0.280 1.307 0.198 1.352 sum -4.603 -9.528 1.480 10.685 Atomic orbital electron populations 1.21513 0.78429 1.02804 1.01711 1.45394 1.05823 1.04851 1.65074 1.21405 0.84741 0.88303 0.94684 1.19067 0.94153 0.86374 1.49351 0.89301 1.27210 0.93907 1.01688 0.92513 1.69365 1.01725 1.36501 1.25045 0.86023 0.79899 0.79560 0.79586 1.18943 1.19695 1.18182 1.75823 1.14674 0.98006 1.30452 1.75081 1.13920 1.08046 1.14396 1.24458 0.92988 0.93572 1.28946 1.82340 0.99990 0.90806 1.92768 1.22505 1.00295 0.96815 0.93629 1.21529 0.93011 0.94969 0.98700 1.21296 0.93780 0.94562 0.95898 1.20106 0.84682 1.05644 0.97168 1.50380 1.02556 0.98193 1.02551 1.96277 1.68948 1.46117 1.24449 1.96299 1.64208 1.65631 1.09896 1.20959 0.92497 0.91157 0.99111 1.15950 0.93650 0.98566 0.88748 1.24794 0.94612 0.94484 0.92812 1.81178 1.06609 1.06086 1.10743 0.92343 0.90238 0.91712 0.89974 0.81424 0.81588 0.81581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 52. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.70 10.80 59.85 0.65 2.34 16 2 N -0.51 -11.51 3.23 -124.74 -0.40 -11.91 16 3 C 0.35 9.19 7.52 -154.23 -1.16 8.03 16 4 C -0.45 -11.33 9.26 -36.34 -0.34 -11.66 16 5 H 0.09 2.02 7.34 -52.49 -0.39 1.64 16 6 C 0.08 1.90 5.66 -15.21 -0.09 1.82 16 7 N -0.71 -18.24 12.04 55.97 0.67 -17.57 16 8 Si 0.93 17.32 29.64 -169.99 -5.04 12.28 16 9 H -0.26 -4.84 7.11 56.52 0.40 -4.43 16 10 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 11 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 12 N -0.34 -9.65 10.65 31.18 0.33 -9.32 16 13 N -0.26 -6.70 11.57 29.93 0.35 -6.36 16 14 C -0.03 -0.69 7.65 -87.06 -0.67 -1.35 16 15 S 0.11 1.64 20.42 -107.50 -2.20 -0.56 16 16 C -0.02 -0.23 4.92 -38.49 -0.19 -0.42 16 17 C -0.06 -0.63 9.79 -39.40 -0.39 -1.01 16 18 C -0.03 -0.33 9.56 -39.54 -0.38 -0.71 16 19 C 0.01 0.13 6.88 -79.96 -0.55 -0.42 16 20 N -0.02 -0.25 4.98 33.96 0.17 -0.08 16 21 O -0.16 -2.27 19.13 -31.56 -0.60 -2.87 16 22 O -0.17 -2.45 19.13 -31.57 -0.60 -3.05 16 23 C -0.01 -0.17 9.28 -39.19 -0.36 -0.53 16 24 C 0.04 0.54 5.76 -106.61 -0.61 -0.07 16 25 C 0.25 4.19 14.12 -22.49 -0.32 3.87 16 26 N -0.37 -6.98 18.53 41.81 0.77 -6.21 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.08 1.29 7.49 -51.93 -0.39 0.90 16 29 H 0.06 0.95 7.75 -51.93 -0.40 0.55 16 30 H 0.29 6.62 8.27 -40.82 -0.34 6.29 16 31 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.17 1.21 7.56 -52.49 -0.40 0.82 16 33 H 0.17 1.80 7.56 -52.48 -0.40 1.40 16 LS Contribution 334.02 15.07 5.03 5.03 Total: -1.00 -33.29 334.02 -7.86 -41.15 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -1.95 Total: -0.42 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -4.40 Total: -0.12 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 1.89 Total: -51.44 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -1.21 Total: -5.92 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.04 Total: 12.28 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.20 Total: -0.56 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.29 -7.86 -41.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360093389.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.495 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds