Wall clock time and date at job start Tue Mar 31 2020 16:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.38586 * 126.99520 * 2 1 4 4 C 1.38190 * 126.53892 * 359.97438 * 3 2 1 5 5 H 1.07998 * 120.00498 * 0.02562 * 4 3 2 6 6 C 1.46348 * 120.00156 * 179.97438 * 4 3 2 7 7 N 1.29663 * 119.99841 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00458 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47350 * 89.99844 * 8 6 4 10 10 H 1.48500 * 109.47193 * 210.00222 * 8 6 4 11 11 H 1.48501 * 109.46795 * 330.00123 * 8 6 4 12 12 N 1.34182 * 106.92138 * 180.02562 * 3 2 1 13 13 N 1.28584 * 109.39637 * 359.75179 * 12 3 2 14 14 C 1.33915 * 109.97177 * 0.40955 * 13 12 3 15 15 S 1.71195 * 126.15262 * 179.85354 * 14 13 12 16 16 C 1.76197 * 99.99826 * 354.53504 * 15 14 13 17 17 C 1.38952 * 120.17776 * 103.86251 * 16 15 14 18 18 C 1.38019 * 120.06408 * 180.29450 * 17 16 15 19 19 C 1.38576 * 120.41931 * 359.45718 * 18 17 16 20 20 N 1.48021 * 119.82283 * 180.29573 * 19 18 17 21 21 O 1.31695 * 119.99940 * 359.97438 * 20 19 18 22 22 O 1.31699 * 119.99886 * 179.97438 * 20 19 18 23 23 C 1.37867 * 120.35449 * 0.26678 * 19 18 17 24 24 C 1.39658 * 119.92576 * 0.02562 * 23 19 18 25 25 C 1.43209 * 120.20531 * 180.02562 * 24 23 19 26 26 N 4.48088 * 108.99709 * 234.66008 * 2 1 3 27 27 H 1.08997 * 109.47363 * 269.99940 * 1 2 3 28 28 H 1.09002 * 109.46906 * 29.99979 * 1 2 3 29 29 H 1.09002 * 109.46905 * 149.99778 * 1 2 3 30 30 H 0.97000 * 120.00095 * 179.97438 * 7 6 4 31 31 H 1.07997 * 119.96821 * 0.02954 * 17 16 15 32 32 H 1.07996 * 119.78986 * 179.72369 * 18 17 16 33 33 H 1.08006 * 120.03685 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2990 1.1069 0.0000 4 6 1.9073 2.4321 -0.0005 5 1 0.8573 2.6849 -0.0005 6 6 2.9153 3.4931 0.0001 7 7 4.1759 3.1896 0.0007 8 14 2.3859 5.2845 0.0002 9 1 2.2449 5.7590 1.4002 10 1 3.4087 6.1029 -0.6993 11 1 1.0831 5.4156 -0.7004 12 7 3.5593 0.6463 -0.0006 13 7 3.5441 -0.6394 0.0043 14 6 2.2801 -1.0819 -0.0006 15 16 1.7837 -2.7203 -0.0004 16 6 3.3488 -3.5142 -0.1576 17 6 3.9406 -4.1163 0.9461 18 6 5.1694 -4.7322 0.8218 19 6 5.8168 -4.7656 -0.4030 20 7 7.1313 -5.4354 -0.5228 21 8 7.6828 -5.9972 0.5330 22 8 7.7494 -5.4696 -1.6852 23 6 5.2429 -4.1787 -1.5106 24 6 4.0027 -3.5461 -1.4000 25 6 3.4008 -2.9351 -2.5468 26 7 2.9236 -2.4507 -3.4561 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 4.8440 3.8928 0.0007 31 1 3.4404 -4.0985 1.9031 32 1 5.6273 -5.1949 1.6835 33 1 5.7522 -4.2073 -2.4626 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360093389.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:40 Heat of formation + Delta-G solvation = 139.903829 kcal Electronic energy + Delta-G solvation = -24274.271412 eV Core-core repulsion = 20431.886754 eV Total energy + Delta-G solvation = -3842.384659 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.053 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -42.35132 -41.48741 -39.61989 -37.77237 -35.69207 -35.57226 -35.21905 -33.35675 -32.99638 -31.48574 -28.43157 -28.03362 -27.19588 -25.66334 -23.98169 -22.96864 -22.39683 -21.10370 -19.48216 -19.36449 -19.04824 -18.29720 -17.51532 -17.22620 -17.13587 -16.91766 -16.49879 -16.07546 -15.59778 -15.44408 -15.07569 -14.62644 -14.51980 -14.09941 -13.94909 -13.91473 -13.81825 -13.21762 -13.14562 -12.98962 -12.88032 -12.61039 -12.49315 -12.28808 -12.04752 -11.94428 -11.75351 -11.52520 -10.98486 -10.69500 -10.60047 -10.44733 -10.37551 -8.73660 -8.72026 -6.56322 -2.07783 -0.84875 -0.38026 -0.20247 0.31876 0.98500 1.14389 1.30470 1.37501 1.46288 1.53356 1.57365 2.11776 2.17972 2.36386 2.42080 2.46965 3.12009 3.22346 3.29810 3.41719 3.66594 3.97339 4.02464 4.21715 4.34308 4.41401 4.53457 4.57475 4.63422 4.77182 4.86821 5.01624 5.16782 5.45395 5.54160 6.02723 6.10251 6.15538 6.50836 6.93152 8.20903 8.57497 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.015821 B = 0.003438 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.320330 B = 8143.165529 C = 8833.453639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.518 5.518 3 C 0.317 3.683 4 C -0.482 4.482 5 H 0.104 0.896 6 C 0.035 3.965 7 N -0.758 5.758 8 Si 1.008 2.992 9 H -0.255 1.255 10 H -0.269 1.269 11 H -0.248 1.248 12 N -0.398 5.398 13 N -0.306 5.306 14 C -0.012 4.012 15 S 0.156 5.844 16 C -0.040 4.040 17 C -0.043 4.043 18 C -0.009 4.009 19 C 0.007 3.993 20 N -0.017 5.017 21 O -0.144 6.144 22 O -0.205 6.205 23 C -0.009 4.009 24 C 0.021 3.979 25 C 0.264 3.736 26 N -0.419 5.419 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.294 0.706 31 H 0.205 0.795 32 H 0.203 0.797 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.458 -12.641 4.430 14.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.219 5.219 3 C 0.077 3.923 4 C -0.522 4.522 5 H 0.122 0.878 6 C -0.192 4.192 7 N -0.380 5.380 8 Si 0.826 3.174 9 H -0.179 1.179 10 H -0.193 1.193 11 H -0.171 1.171 12 N -0.247 5.247 13 N -0.153 5.153 14 C -0.382 4.382 15 S 0.390 5.610 16 C -0.156 4.156 17 C -0.064 4.064 18 C -0.030 4.030 19 C -0.079 4.079 20 N 0.463 4.537 21 O -0.347 6.347 22 O -0.391 6.391 23 C -0.032 4.032 24 C 0.013 3.987 25 C -0.052 4.052 26 N -0.094 5.094 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.222 0.778 32 H 0.220 0.780 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -6.179 -11.996 3.060 13.837 hybrid contribution 0.670 1.323 -0.251 1.504 sum -5.509 -10.673 2.809 12.335 Atomic orbital electron populations 1.21863 0.75407 1.04246 1.03621 1.45793 1.07802 1.04257 1.64062 1.21775 0.85152 0.89732 0.95669 1.19551 0.95309 0.86738 1.50565 0.87800 1.28346 0.93506 1.06339 0.91052 1.69479 1.03305 1.38358 1.26828 0.84840 0.79650 0.72953 0.79969 1.17941 1.19343 1.17099 1.75684 1.16521 0.99572 1.32945 1.74948 1.15742 1.07238 1.17412 1.25643 0.92384 0.96601 1.23619 1.82143 1.00844 0.85853 1.92135 1.22684 1.00287 0.98029 0.94559 1.21946 0.92718 0.92946 0.98834 1.21737 0.92862 0.92515 0.95901 1.20283 0.84091 1.05589 0.97937 1.50549 1.02905 0.97957 1.02323 1.96257 1.68946 1.45171 1.24276 1.96322 1.65087 1.67472 1.10180 1.20958 0.91749 0.90566 0.99931 1.15957 0.94579 0.99888 0.88247 1.25284 0.93676 0.93468 0.92769 1.81174 1.08234 1.07899 1.12136 0.90079 0.89811 0.89325 0.89473 0.77842 0.78018 0.80942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.95 10.80 127.77 1.38 4.33 16 2 N -0.52 -23.34 3.23 -548.56 -1.77 -25.11 16 3 C 0.32 17.29 7.52 132.44 1.00 18.28 16 4 C -0.48 -24.81 9.26 24.37 0.23 -24.58 16 5 H 0.10 4.75 7.34 -2.91 -0.02 4.73 16 6 C 0.03 1.71 5.66 87.12 0.49 2.21 16 7 N -0.76 -40.80 12.04 23.18 0.28 -40.52 16 8 Si 1.01 35.64 29.64 68.60 2.03 37.68 16 9 H -0.26 -8.55 7.11 99.48 0.71 -7.84 16 10 H -0.27 -9.22 7.11 99.48 0.71 -8.52 16 11 H -0.25 -8.23 7.11 99.48 0.71 -7.53 16 12 N -0.40 -23.55 10.65 -55.28 -0.59 -24.14 16 13 N -0.31 -15.80 11.57 -59.21 -0.69 -16.48 16 14 C -0.01 -0.50 7.65 179.11 1.37 0.87 16 15 S 0.16 4.50 20.42 -56.49 -1.15 3.35 16 16 C -0.04 -1.01 4.92 22.98 0.11 -0.90 16 17 C -0.04 -0.73 9.79 22.39 0.22 -0.51 16 18 C -0.01 -0.13 9.56 22.30 0.21 0.08 16 19 C 0.01 0.16 6.88 36.37 0.25 0.41 16 20 N -0.02 -0.43 4.98 -46.48 -0.23 -0.66 16 21 O -0.14 -3.58 19.13 3.52 0.07 -3.52 16 22 O -0.21 -5.99 19.13 3.52 0.07 -5.92 16 23 C -0.01 -0.20 9.28 22.52 0.21 0.00 16 24 C 0.02 0.57 5.76 -21.15 -0.12 0.45 16 25 C 0.26 8.96 14.12 88.34 1.25 10.20 16 26 N -0.42 -16.19 18.53 19.00 0.35 -15.84 16 27 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.08 2.62 7.49 -2.39 -0.02 2.61 16 29 H 0.09 2.40 7.75 -2.39 -0.02 2.38 16 30 H 0.29 14.09 8.27 -92.71 -0.77 13.33 16 31 H 0.20 1.99 8.06 -2.91 -0.02 1.97 16 32 H 0.20 1.78 7.56 -2.91 -0.02 1.76 16 33 H 0.17 3.74 7.56 -2.91 -0.02 3.72 16 Total: -1.00 -77.63 334.02 6.18 -71.45 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 1.21 Total: 8.85 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 6.60 Total: 10.86 kcal Atomic # 7 Polarization: -120.11 SS G_CDS: -2.64 Total: -122.75 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.13 Total: -9.44 kcal Atomic # 14 Polarization: 35.64 SS G_CDS: 2.03 Total: 37.68 kcal Atomic # 16 Polarization: 4.50 SS G_CDS: -1.15 Total: 3.35 kcal Total: -77.63 6.18 -71.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360093389.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.358 kcal (2) G-P(sol) polarization free energy of solvation -77.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds