Wall clock time and date at job start Tue Mar 31 2020 16:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.38589 * 126.99825 * 2 1 4 4 C 1.38168 * 126.54201 * 359.96793 * 3 2 1 5 5 H 1.08005 * 119.99621 * 359.97438 * 4 3 2 6 6 C 1.46344 * 120.00157 * 180.02562 * 4 3 2 7 7 N 1.29670 * 119.99708 * 180.02562 * 6 4 3 8 8 Si 1.86794 * 120.00171 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.47095 * 270.00255 * 8 6 4 10 10 H 1.48497 * 109.46956 * 30.00018 * 8 6 4 11 11 H 1.48499 * 109.47371 * 150.00158 * 8 6 4 12 12 N 1.34200 * 106.92366 * 180.23038 * 3 2 1 13 13 N 1.28581 * 109.40797 * 359.61665 * 12 3 2 14 14 C 1.33954 * 109.96440 * 0.39284 * 13 12 3 15 15 S 1.71202 * 126.15064 * 179.75715 * 14 13 12 16 16 C 1.76202 * 99.99976 * 5.14466 * 15 14 13 17 17 C 1.38782 * 120.00842 * 257.31084 * 16 15 14 18 18 C 1.39469 * 119.75448 * 179.79906 * 17 16 15 19 19 C 1.43194 * 120.10928 * 180.22995 * 18 17 16 20 20 N 8.07523 * 126.88331 * 206.42859 * 2 1 3 21 21 C 1.39709 * 119.77927 * 0.45567 * 18 17 16 22 22 C 1.38012 * 120.01857 * 359.79398 * 21 18 17 23 23 C 1.38204 * 120.24294 * 359.97438 * 22 21 18 24 24 N 1.48019 * 119.89065 * 179.97438 * 23 22 21 25 25 O 1.31698 * 119.99949 * 0.02562 * 24 23 22 26 26 O 1.31703 * 120.00170 * 180.02562 * 24 23 22 27 27 H 1.09003 * 109.46845 * 89.99557 * 1 2 3 28 28 H 1.08994 * 109.46932 * 210.00016 * 1 2 3 29 29 H 1.08994 * 109.46599 * 329.99845 * 1 2 3 30 30 H 0.96998 * 119.99951 * 180.02562 * 7 6 4 31 31 H 1.07996 * 120.12357 * 359.97438 * 17 16 15 32 32 H 1.08003 * 119.99316 * 179.77473 * 21 18 17 33 33 H 1.08004 * 119.88205 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2991 1.1068 0.0000 4 6 1.9076 2.4319 -0.0006 5 1 0.8575 2.6847 -0.0016 6 6 2.9157 3.4928 -0.0011 7 7 2.5482 4.7363 -0.0012 8 14 4.7317 3.0555 -0.0001 9 1 5.2125 2.9407 1.4002 10 1 4.9294 1.7603 -0.6991 11 1 5.4971 4.1179 -0.7007 12 7 3.5595 0.6462 -0.0052 13 7 3.5446 -0.6395 -0.0001 14 6 2.2804 -1.0822 -0.0001 15 16 1.7841 -2.7207 -0.0001 16 6 3.3494 -3.5146 0.1553 17 6 3.9475 -4.0933 -0.9553 18 6 5.1886 -4.7166 -0.8270 19 6 5.8149 -5.3118 -1.9689 20 7 6.3117 -5.7840 -2.8748 21 6 5.8165 -4.7624 0.4202 22 6 5.2110 -4.1884 1.5195 23 6 3.9834 -3.5664 1.3925 24 7 3.3407 -2.9539 2.5769 25 8 3.9389 -3.0018 3.7492 26 8 2.1707 -2.3610 2.4584 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3632 0.8899 0.5138 30 1 3.2163 5.4395 -0.0019 31 1 3.4551 -4.0586 -1.9158 32 1 6.7759 -5.2474 0.5241 33 1 5.6981 -4.2255 2.4827 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360101694.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:07 Heat of formation + Delta-G solvation = 172.038958 kcal Electronic energy + Delta-G solvation = -25005.494953 eV Core-core repulsion = 21164.503779 eV Total energy + Delta-G solvation = -3840.991175 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.053 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -40.76291 -40.40719 -38.35941 -36.77521 -34.22455 -33.77646 -33.57562 -32.36007 -31.90352 -30.29560 -27.24054 -26.79414 -25.49266 -23.73845 -23.32581 -21.60329 -20.58308 -19.75599 -18.72106 -17.95534 -17.82123 -16.76599 -16.01263 -15.91390 -15.70785 -15.05331 -14.92404 -14.62867 -14.51549 -14.46825 -14.23052 -13.35880 -13.15241 -13.02084 -12.88333 -12.58147 -12.50772 -12.24173 -11.68200 -11.64691 -11.51019 -11.12794 -11.09507 -10.99141 -10.70848 -10.36725 -9.82815 -9.77392 -9.64375 -9.54899 -9.07660 -8.71931 -7.91830 -7.17797 -6.99221 -4.76392 -0.90931 0.35498 0.67787 1.13673 1.47163 2.15885 2.22190 2.58827 2.84025 3.16864 3.24710 3.29529 3.33324 3.62235 3.94010 3.99213 4.00408 4.24236 4.34259 4.38163 4.57346 4.98618 5.04413 5.12840 5.24652 5.42327 5.45709 5.66870 5.79221 5.99300 5.99803 6.21648 6.69913 6.78218 6.93700 6.95240 7.36215 7.65016 7.86502 8.31578 8.55676 9.74975 10.06744 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.012846 B = 0.004513 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.170009 B = 6202.420527 C = 6683.294285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.502 5.502 3 C 0.337 3.663 4 C -0.426 4.426 5 H 0.096 0.904 6 C 0.104 3.896 7 N -0.774 5.774 8 Si 0.905 3.095 9 H -0.272 1.272 10 H -0.170 1.170 11 H -0.306 1.306 12 N -0.411 5.411 13 N -0.269 5.269 14 C 0.009 3.991 15 S 0.161 5.839 16 C -0.066 4.066 17 C -0.015 4.015 18 C 0.017 3.983 19 C 0.252 3.748 20 N -0.391 5.391 21 C -0.054 4.054 22 C -0.058 4.058 23 C 0.072 3.928 24 N -0.028 5.028 25 O -0.201 6.201 26 O -0.108 6.108 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.297 0.703 31 H 0.164 0.836 32 H 0.159 0.841 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.513 -16.328 -0.249 16.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.203 5.203 3 C 0.100 3.900 4 C -0.466 4.466 5 H 0.114 0.886 6 C -0.126 4.126 7 N -0.397 5.397 8 Si 0.731 3.269 9 H -0.197 1.197 10 H -0.092 1.092 11 H -0.235 1.235 12 N -0.265 5.265 13 N -0.117 5.117 14 C -0.362 4.362 15 S 0.398 5.602 16 C -0.180 4.180 17 C -0.039 4.039 18 C 0.011 3.989 19 C -0.064 4.064 20 N -0.066 5.066 21 C -0.076 4.076 22 C -0.079 4.079 23 C -0.020 4.020 24 N 0.449 4.551 25 O -0.382 6.382 26 O -0.312 6.312 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.182 0.818 32 H 0.177 0.823 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.939 -17.556 -2.181 17.797 hybrid contribution 0.008 1.503 1.146 1.890 sum 1.947 -16.054 -1.036 16.205 Atomic orbital electron populations 1.21588 0.77676 1.03423 1.01869 1.45166 1.06130 1.04252 1.64725 1.21335 0.85063 0.88964 0.94603 1.18976 0.95954 0.85147 1.46497 0.88588 1.27336 1.03783 0.93189 0.88332 1.68963 1.39664 1.01547 1.29494 0.86379 0.77519 0.81278 0.81701 1.19701 1.09178 1.23484 1.75480 1.14638 1.00302 1.36095 1.74858 1.14432 1.06881 1.15488 1.24733 0.92328 0.94348 1.24817 1.82257 0.98717 0.89500 1.89764 1.21733 1.02774 1.01091 0.92446 1.21579 0.91876 0.92263 0.98133 1.16190 0.94476 0.99103 0.89100 1.25284 0.94054 0.94055 0.93013 1.81301 1.07597 1.08213 1.09465 1.21243 1.00021 0.97011 0.89363 1.20974 0.91603 0.93801 1.01490 1.20604 0.95885 1.01025 0.84440 1.50275 1.02198 0.99527 1.03131 1.96242 1.65022 1.66902 1.10035 1.96432 1.01760 1.39274 1.93761 0.92250 0.91039 0.89920 0.89125 0.81803 0.82334 0.81625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.67 10.80 59.85 0.65 2.31 16 2 N -0.50 -11.09 3.23 -124.72 -0.40 -11.49 16 3 C 0.34 8.62 7.32 -154.22 -1.13 7.50 16 4 C -0.43 -11.11 9.86 -36.35 -0.36 -11.47 16 5 H 0.10 2.47 7.47 -52.48 -0.39 2.08 16 6 C 0.10 2.67 5.69 -15.21 -0.09 2.58 16 7 N -0.77 -19.58 13.90 55.97 0.78 -18.80 16 8 Si 0.91 21.60 26.75 -169.99 -4.55 17.05 16 9 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.17 -4.27 5.22 56.52 0.29 -3.98 16 11 H -0.31 -6.97 7.11 56.52 0.40 -6.56 16 12 N -0.41 -10.93 6.95 31.18 0.22 -10.71 16 13 N -0.27 -6.54 11.57 29.95 0.35 -6.19 16 14 C 0.01 0.18 6.68 -87.00 -0.58 -0.40 16 15 S 0.16 2.50 18.56 -107.50 -2.00 0.51 16 16 C -0.07 -0.90 4.87 -39.06 -0.19 -1.09 16 17 C -0.01 -0.15 9.50 -38.92 -0.37 -0.52 16 18 C 0.02 0.15 5.73 -106.97 -0.61 -0.46 16 19 C 0.25 2.42 15.33 -22.48 -0.34 2.07 16 20 N -0.39 -4.59 18.54 41.84 0.78 -3.81 16 21 C -0.05 -0.41 9.75 -39.12 -0.38 -0.79 16 22 C -0.06 -0.59 9.55 -39.68 -0.38 -0.97 16 23 C 0.07 1.02 6.91 -79.64 -0.55 0.47 16 24 N -0.03 -0.51 4.98 34.11 0.17 -0.34 16 25 O -0.20 -3.65 19.14 -31.57 -0.60 -4.26 16 26 O -0.11 -2.13 15.40 -31.57 -0.49 -2.62 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 1.04 7.75 -51.93 -0.40 0.64 16 29 H 0.08 1.38 7.49 -51.93 -0.39 0.99 16 30 H 0.30 6.81 8.27 -40.82 -0.34 6.47 16 31 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.16 0.64 8.06 -52.48 -0.42 0.22 16 33 H 0.17 1.40 7.56 -52.48 -0.40 1.00 16 LS Contribution 323.23 15.07 4.87 4.87 Total: -1.00 -33.29 323.23 -7.30 -40.59 By element: Atomic # 1 Polarization: -1.96 SS G_CDS: -2.09 Total: -4.05 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -4.33 Total: -0.76 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 1.88 Total: -51.34 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -1.09 Total: -6.87 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.55 Total: 17.05 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.00 Total: 0.51 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.29 -7.30 -40.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360101694.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.628 kcal (2) G-P(sol) polarization free energy of solvation -33.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds