Wall clock time and date at job start Tue Mar 31 2020 16:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.38589 * 126.99825 * 2 1 4 4 C 1.38168 * 126.54201 * 359.96793 * 3 2 1 5 5 H 1.08005 * 119.99621 * 359.97438 * 4 3 2 6 6 C 1.46344 * 120.00157 * 180.02562 * 4 3 2 7 7 N 1.29670 * 119.99708 * 180.02562 * 6 4 3 8 8 Si 1.86794 * 120.00171 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.47095 * 270.00255 * 8 6 4 10 10 H 1.48497 * 109.46956 * 30.00018 * 8 6 4 11 11 H 1.48499 * 109.47371 * 150.00158 * 8 6 4 12 12 N 1.34200 * 106.92366 * 180.23038 * 3 2 1 13 13 N 1.28581 * 109.40797 * 359.61665 * 12 3 2 14 14 C 1.33954 * 109.96440 * 0.39284 * 13 12 3 15 15 S 1.71202 * 126.15064 * 179.75715 * 14 13 12 16 16 C 1.76202 * 99.99976 * 5.14466 * 15 14 13 17 17 C 1.38782 * 120.00842 * 257.31084 * 16 15 14 18 18 C 1.39469 * 119.75448 * 179.79906 * 17 16 15 19 19 C 1.43194 * 120.10928 * 180.22995 * 18 17 16 20 20 N 8.07523 * 126.88331 * 206.42859 * 2 1 3 21 21 C 1.39709 * 119.77927 * 0.45567 * 18 17 16 22 22 C 1.38012 * 120.01857 * 359.79398 * 21 18 17 23 23 C 1.38204 * 120.24294 * 359.97438 * 22 21 18 24 24 N 1.48019 * 119.89065 * 179.97438 * 23 22 21 25 25 O 1.31698 * 119.99949 * 0.02562 * 24 23 22 26 26 O 1.31703 * 120.00170 * 180.02562 * 24 23 22 27 27 H 1.09003 * 109.46845 * 89.99557 * 1 2 3 28 28 H 1.08994 * 109.46932 * 210.00016 * 1 2 3 29 29 H 1.08994 * 109.46599 * 329.99845 * 1 2 3 30 30 H 0.96998 * 119.99951 * 180.02562 * 7 6 4 31 31 H 1.07996 * 120.12357 * 359.97438 * 17 16 15 32 32 H 1.08003 * 119.99316 * 179.77473 * 21 18 17 33 33 H 1.08004 * 119.88205 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2991 1.1068 0.0000 4 6 1.9076 2.4319 -0.0006 5 1 0.8575 2.6847 -0.0016 6 6 2.9157 3.4928 -0.0011 7 7 2.5482 4.7363 -0.0012 8 14 4.7317 3.0555 -0.0001 9 1 5.2125 2.9407 1.4002 10 1 4.9294 1.7603 -0.6991 11 1 5.4971 4.1179 -0.7007 12 7 3.5595 0.6462 -0.0052 13 7 3.5446 -0.6395 -0.0001 14 6 2.2804 -1.0822 -0.0001 15 16 1.7841 -2.7207 -0.0001 16 6 3.3494 -3.5146 0.1553 17 6 3.9475 -4.0933 -0.9553 18 6 5.1886 -4.7166 -0.8270 19 6 5.8149 -5.3118 -1.9689 20 7 6.3117 -5.7840 -2.8748 21 6 5.8165 -4.7624 0.4202 22 6 5.2110 -4.1884 1.5195 23 6 3.9834 -3.5664 1.3925 24 7 3.3407 -2.9539 2.5769 25 8 3.9389 -3.0018 3.7492 26 8 2.1707 -2.3610 2.4584 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3632 0.8899 0.5138 30 1 3.2163 5.4395 -0.0019 31 1 3.4551 -4.0586 -1.9158 32 1 6.7759 -5.2474 0.5241 33 1 5.6981 -4.2255 2.4827 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360101694.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:02 Heat of formation + Delta-G solvation = 152.017741 kcal Electronic energy + Delta-G solvation = -25006.363139 eV Core-core repulsion = 21164.503779 eV Total energy + Delta-G solvation = -3841.859360 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.053 amu Computer time = 4.89 seconds Orbital eigenvalues (eV) -42.53692 -41.39005 -39.54505 -37.67763 -35.65167 -35.55500 -35.28644 -33.34731 -32.81751 -32.10665 -28.46724 -28.32122 -27.22707 -24.66243 -24.37024 -23.34616 -22.25704 -20.77386 -19.89476 -19.62502 -19.19623 -18.18112 -17.41610 -17.10419 -17.01900 -16.59537 -16.35252 -16.01211 -15.56897 -15.34941 -15.22886 -14.90270 -14.27348 -14.22024 -14.04029 -13.98351 -13.77500 -13.53120 -13.40975 -13.14635 -13.01558 -12.74428 -12.63246 -12.41583 -12.11895 -11.78013 -11.55437 -11.42705 -10.78406 -10.72733 -10.63513 -10.44025 -9.77433 -9.08673 -8.41740 -6.63449 -2.09634 -0.57142 -0.38955 -0.03275 0.36630 0.99213 1.01973 1.38424 1.40154 1.47635 1.50221 1.71016 2.09757 2.32092 2.36419 2.41709 2.49979 3.05523 3.06785 3.39318 3.52430 3.73965 4.06926 4.13174 4.32070 4.42875 4.46606 4.47062 4.63685 4.65724 4.69403 4.85790 5.02089 5.06562 5.55292 5.57285 5.91406 5.95310 6.16905 6.40796 6.75972 7.89876 8.26750 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.012846 B = 0.004513 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.170009 B = 6202.420527 C = 6683.294285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.506 5.506 3 C 0.320 3.680 4 C -0.458 4.458 5 H 0.086 0.914 6 C 0.081 3.919 7 N -0.797 5.797 8 Si 0.954 3.046 9 H -0.289 1.289 10 H -0.191 1.191 11 H -0.290 1.290 12 N -0.445 5.445 13 N -0.311 5.311 14 C 0.035 3.965 15 S 0.195 5.805 16 C -0.094 4.094 17 C -0.006 4.006 18 C 0.034 3.966 19 C 0.278 3.722 20 N -0.420 5.420 21 C -0.020 4.020 22 C -0.049 4.049 23 C 0.047 3.953 24 N -0.025 5.025 25 O -0.198 6.198 26 O -0.167 6.167 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.307 0.693 31 H 0.184 0.816 32 H 0.208 0.792 33 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.011 -19.584 -0.794 19.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.206 5.206 3 C 0.079 3.921 4 C -0.498 4.498 5 H 0.104 0.896 6 C -0.147 4.147 7 N -0.421 5.421 8 Si 0.780 3.220 9 H -0.216 1.216 10 H -0.114 1.114 11 H -0.218 1.218 12 N -0.296 5.296 13 N -0.156 5.156 14 C -0.338 4.338 15 S 0.430 5.570 16 C -0.209 4.209 17 C -0.030 4.030 18 C 0.028 3.972 19 C -0.038 4.038 20 N -0.095 5.095 21 C -0.041 4.041 22 C -0.070 4.070 23 C -0.044 4.044 24 N 0.448 4.552 25 O -0.385 6.385 26 O -0.361 6.361 27 H 0.100 0.900 28 H 0.115 0.885 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.201 0.799 32 H 0.225 0.775 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 3.358 -20.774 -2.774 21.226 hybrid contribution -0.331 1.994 1.298 2.402 sum 3.027 -18.780 -1.476 19.080 Atomic orbital electron populations 1.21922 0.74961 1.04617 1.03728 1.45590 1.08015 1.03861 1.63131 1.21420 0.85730 0.89634 0.95298 1.18945 0.95631 0.85856 1.49394 0.89586 1.27691 1.05233 0.93302 0.88434 1.68945 1.40540 1.01811 1.30813 0.85662 0.75828 0.80328 0.80161 1.21588 1.11393 1.21790 1.75354 1.15419 1.01663 1.37198 1.74759 1.15874 1.06004 1.18950 1.25828 0.91668 0.96942 1.19406 1.82085 1.00326 0.85195 1.89410 1.21791 1.02667 1.02968 0.93428 1.21786 0.92233 0.91085 0.97859 1.16188 0.93604 0.97944 0.89464 1.25058 0.93181 0.93163 0.92407 1.81366 1.08661 1.09199 1.10294 1.21785 1.00758 0.94123 0.87417 1.21403 0.89800 0.92400 1.03386 1.21048 0.97450 1.02594 0.83285 1.50753 1.01912 0.98552 1.03933 1.96207 1.64640 1.66265 1.11425 1.96436 1.03318 1.42471 1.93828 0.89958 0.88502 0.90111 0.88117 0.79866 0.77489 0.79499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.01 10.80 127.77 1.38 4.39 16 2 N -0.51 -22.60 3.23 -548.49 -1.77 -24.37 16 3 C 0.32 16.90 7.32 132.43 0.97 17.87 16 4 C -0.46 -24.87 9.86 24.36 0.24 -24.63 16 5 H 0.09 4.66 7.47 -2.91 -0.02 4.64 16 6 C 0.08 4.30 5.69 87.12 0.50 4.79 16 7 N -0.80 -41.33 13.90 23.18 0.32 -41.01 16 8 Si 0.95 46.22 26.75 68.60 1.84 48.05 16 9 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 10 H -0.19 -9.86 5.22 99.48 0.52 -9.34 16 11 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 12 N -0.44 -24.21 6.95 -55.28 -0.38 -24.59 16 13 N -0.31 -15.19 11.57 -59.17 -0.68 -15.87 16 14 C 0.03 1.46 6.68 179.08 1.20 2.66 16 15 S 0.19 5.80 18.56 -56.49 -1.05 4.75 16 16 C -0.09 -2.36 4.87 22.61 0.11 -2.25 16 17 C -0.01 -0.10 9.50 22.70 0.22 0.11 16 18 C 0.03 0.44 5.73 -21.38 -0.12 0.31 16 19 C 0.28 4.11 15.33 88.33 1.35 5.46 16 20 N -0.42 -8.39 18.54 19.00 0.35 -8.04 16 21 C -0.02 -0.18 9.75 22.57 0.22 0.04 16 22 C -0.05 -0.79 9.55 22.21 0.21 -0.58 16 23 C 0.05 1.23 6.91 36.58 0.25 1.48 16 24 N -0.02 -0.86 4.98 -45.98 -0.23 -1.09 16 25 O -0.20 -6.97 19.14 3.52 0.07 -6.91 16 26 O -0.17 -6.65 15.40 3.51 0.05 -6.60 16 27 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.10 2.71 7.75 -2.39 -0.02 2.69 16 29 H 0.08 2.73 7.49 -2.39 -0.02 2.72 16 30 H 0.31 14.29 8.27 -92.71 -0.77 13.52 16 31 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 32 H 0.21 0.09 8.06 -2.91 -0.02 0.07 16 33 H 0.19 2.28 7.56 -2.91 -0.02 2.26 16 Total: -1.00 -76.90 323.23 6.06 -70.84 By element: Atomic # 1 Polarization: -5.86 SS G_CDS: 1.02 Total: -4.84 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 6.52 Total: 9.67 kcal Atomic # 7 Polarization: -112.57 SS G_CDS: -2.39 Total: -114.97 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.12 Total: -13.51 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.84 Total: 48.05 kcal Atomic # 16 Polarization: 5.80 SS G_CDS: -1.05 Total: 4.75 kcal Total: -76.90 6.06 -70.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360101694.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.858 kcal (2) G-P(sol) polarization free energy of solvation -76.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.89 seconds