Wall clock time and date at job start Tue Mar 31 2020 16:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34743 * 117.00309 * 2 1 4 4 O 1.21505 * 119.99897 * 359.97438 * 3 2 1 5 5 C 1.47417 * 120.00230 * 180.27188 * 3 2 1 6 6 C 1.40013 * 120.15985 * 89.44531 * 5 3 2 7 7 F 1.35098 * 120.03368 * 0.02572 * 6 5 3 8 8 C 1.38170 * 119.93259 * 179.76976 * 6 5 3 9 9 C 1.38287 * 120.26616 * 0.50860 * 8 6 5 10 10 C 1.38825 * 120.32546 * 359.74847 * 9 8 6 11 11 N 1.40174 * 119.97051 * 179.97438 * 10 9 8 12 12 C 1.34782 * 120.00359 * 24.83550 * 11 10 9 13 13 O 1.21291 * 119.99369 * 5.52912 * 12 11 10 14 14 C 1.50690 * 120.00223 * 185.53050 * 12 11 10 15 15 S 1.81007 * 109.47347 * 179.97438 * 14 12 11 16 16 C 1.76192 * 100.00128 * 180.02562 * 15 14 12 17 17 H 1.07997 * 120.00417 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99933 * 180.02562 * 16 15 14 19 19 N 1.31629 * 119.99794 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46848 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47313 * 119.99588 * 20 18 16 23 23 H 1.48504 * 109.46696 * 239.99937 * 20 18 16 24 24 C 1.38840 * 120.05864 * 359.97438 * 10 9 8 25 25 F 1.35100 * 120.12624 * 180.02562 * 24 10 9 26 26 H 1.09003 * 109.47339 * 300.00393 * 1 2 3 27 27 H 1.09003 * 109.47168 * 59.99904 * 1 2 3 28 28 H 1.08998 * 109.47630 * 180.02562 * 1 2 3 29 29 H 1.07997 * 119.86632 * 180.23544 * 8 6 5 30 30 H 1.07992 * 119.83975 * 179.72225 * 9 8 6 31 31 H 0.97008 * 119.99935 * 204.84107 * 11 10 9 32 32 H 1.08995 * 109.47390 * 300.00261 * 14 12 11 33 33 H 1.09009 * 109.47220 * 60.00354 * 14 12 11 34 34 H 0.97003 * 120.00111 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4020 2.2196 -0.0005 5 6 3.5359 1.2777 -0.0061 6 6 4.2339 1.3054 -1.2195 7 9 3.5589 1.2620 -2.3890 8 6 5.6134 1.3825 -1.2197 9 6 6.3095 1.4220 -0.0255 10 6 5.6288 1.3897 1.1840 11 7 6.3418 1.4295 2.3901 12 6 7.5697 1.9840 2.4292 13 8 8.0166 2.5375 1.4468 14 6 8.3872 1.9164 3.6933 15 16 9.9754 2.7436 3.4298 16 6 10.7043 2.5197 5.0182 17 1 10.1628 1.9958 5.7919 18 6 11.9745 3.0168 5.2752 19 7 12.6348 3.6549 4.3321 20 14 12.7476 2.7788 6.9590 21 1 11.8072 2.0344 7.8346 22 1 14.0098 2.0090 6.8199 23 1 13.0400 4.1045 7.5611 24 6 4.2423 1.3180 1.2000 25 9 3.5784 1.2871 2.3762 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 6.1505 1.4077 -2.1564 30 1 7.3879 1.4777 -0.0337 31 1 5.9516 1.0579 3.1968 32 1 7.8487 2.4118 4.5012 33 1 8.5608 0.8734 3.9584 34 1 13.5226 4.0020 4.5115 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362270128.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:51 Heat of formation + Delta-G solvation = -171.503218 kcal Electronic energy + Delta-G solvation = -24745.682800 eV Core-core repulsion = 20406.812581 eV Total energy + Delta-G solvation = -4338.870219 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.052 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -49.49943 -49.40501 -40.89592 -40.43251 -38.33557 -36.82636 -34.89623 -32.53019 -31.91846 -30.65913 -28.56647 -28.05863 -25.59633 -24.96988 -23.16307 -22.15133 -20.58374 -19.06019 -18.42267 -18.35919 -17.69689 -17.62302 -16.91965 -16.57347 -16.39312 -16.11498 -15.91016 -15.74750 -15.35174 -14.89193 -14.73287 -14.39942 -14.09401 -13.71128 -13.60242 -13.41220 -13.00887 -12.85023 -12.65755 -12.61976 -12.33584 -12.08695 -11.22883 -11.17603 -11.13844 -11.12665 -10.86071 -10.65940 -9.93800 -9.79742 -9.46456 -9.16956 -8.40905 -8.39683 -6.64312 -6.32143 -4.04473 0.29279 0.48998 1.54052 2.12576 2.48593 2.60273 3.03054 3.15931 3.17821 3.24821 3.28068 3.41567 3.82393 4.09083 4.11046 4.32574 4.49572 4.62886 4.70867 4.80092 5.00404 5.03976 5.11385 5.19870 5.27892 5.44191 5.62354 5.65062 5.75607 5.80088 5.91015 5.97323 6.41159 7.10417 7.16421 7.50666 8.04648 8.25343 9.13877 10.75284 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.029764 B = 0.002355 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.523139 B =11886.562949 C =12595.787873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.346 6.346 3 C 0.523 3.477 4 O -0.479 6.479 5 C -0.160 4.160 6 C 0.142 3.858 7 F -0.124 7.124 8 C -0.131 4.131 9 C -0.057 4.057 10 C 0.131 3.869 11 N -0.673 5.673 12 C 0.537 3.463 13 O -0.490 6.490 14 C -0.155 4.155 15 S -0.054 6.054 16 C -0.537 4.537 17 H 0.075 0.925 18 C 0.074 3.926 19 N -0.866 5.866 20 Si 0.920 3.080 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.279 1.279 24 C 0.127 3.873 25 F -0.120 7.120 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.107 0.893 29 H 0.159 0.841 30 H 0.178 0.822 31 H 0.417 0.583 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.295 -9.564 -8.642 24.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.262 6.262 3 C 0.364 3.636 4 O -0.365 6.365 5 C -0.163 4.163 6 C 0.121 3.879 7 F -0.102 7.102 8 C -0.151 4.151 9 C -0.077 4.077 10 C 0.033 3.967 11 N -0.319 5.319 12 C 0.325 3.675 13 O -0.362 6.362 14 C -0.305 4.305 15 S 0.172 5.828 16 C -0.685 4.685 17 H 0.093 0.907 18 C -0.135 4.135 19 N -0.501 5.501 20 Si 0.747 3.253 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.205 1.205 24 C 0.104 3.896 25 F -0.098 7.098 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.125 0.875 29 H 0.177 0.823 30 H 0.195 0.805 31 H 0.254 0.746 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.603 -8.247 -10.243 23.605 hybrid contribution -0.784 -0.871 2.673 2.918 sum -20.387 -9.118 -7.570 23.581 Atomic orbital electron populations 1.23393 0.75423 1.04228 1.02966 1.86659 1.24001 1.31919 1.83620 1.20575 0.88047 0.82186 0.72774 1.90906 1.66094 1.36003 1.43503 1.18660 0.90600 1.14285 0.92803 1.17146 0.89784 1.01672 0.79313 1.91557 1.80298 1.93468 1.44875 1.21132 0.90874 1.02468 1.00597 1.21578 1.03302 0.94381 0.88452 1.17662 0.87978 1.02501 0.88574 1.43712 1.18080 1.60374 1.09698 1.20666 0.79798 0.76175 0.90831 1.90672 1.69374 1.39969 1.36207 1.23567 1.03780 1.06698 0.96487 1.85409 1.05903 1.71965 1.19487 1.22879 1.04426 1.43187 0.98051 0.90676 1.25003 0.96000 0.94362 0.98174 1.70012 1.12839 1.34645 1.32647 0.86088 0.79018 0.78170 0.82066 1.19568 1.20496 1.20506 1.16758 0.87788 1.04982 0.80045 1.91544 1.80453 1.93696 1.44122 0.91472 0.91471 0.87511 0.82349 0.80451 0.74605 0.88451 0.88287 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.57 101.05 1.07 1.30 16 2 O -0.35 -3.72 10.58 -40.61 -0.43 -4.15 16 3 C 0.52 6.70 6.67 34.47 0.23 6.93 16 4 O -0.48 -7.18 16.90 -19.27 -0.33 -7.51 16 5 C -0.16 -1.94 5.76 -104.90 -0.60 -2.55 16 6 C 0.14 1.56 7.29 -38.94 -0.28 1.28 16 7 F -0.12 -1.39 16.83 2.25 0.04 -1.35 16 8 C -0.13 -1.28 10.00 -39.59 -0.40 -1.68 16 9 C -0.06 -0.66 8.71 -39.35 -0.34 -1.00 16 10 C 0.13 1.58 6.43 -83.60 -0.54 1.05 16 11 N -0.67 -8.23 5.31 -9.82 -0.05 -8.29 16 12 C 0.54 8.62 7.65 -10.99 -0.08 8.53 16 13 O -0.49 -9.28 13.02 5.55 0.07 -9.20 16 14 C -0.16 -2.75 6.16 36.00 0.22 -2.53 16 15 S -0.05 -1.35 20.57 -107.50 -2.21 -3.56 16 16 C -0.54 -14.47 9.50 30.94 0.29 -14.18 16 17 H 0.08 1.92 7.80 -52.49 -0.41 1.51 16 18 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 19 N -0.87 -25.08 13.22 55.49 0.73 -24.35 16 20 Si 0.92 20.61 29.55 -169.99 -5.02 15.58 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 C 0.13 1.52 7.30 -38.76 -0.28 1.24 16 25 F -0.12 -1.43 16.37 2.25 0.04 -1.39 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 30 H 0.18 2.26 5.77 -52.49 -0.30 1.96 16 31 H 0.42 3.96 8.45 -40.82 -0.34 3.61 16 32 H 0.10 1.59 8.14 -51.92 -0.42 1.17 16 33 H 0.10 1.58 8.14 -51.91 -0.42 1.16 16 34 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 334.29 15.07 5.04 5.04 Total: -1.00 -33.14 334.29 -5.67 -38.81 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -2.73 Total: 0.04 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -0.81 Total: 0.33 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: 0.68 Total: -32.63 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.68 Total: -20.86 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.07 Total: -2.74 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: -1.35 SS G_CDS: -2.21 Total: -3.56 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.14 -5.67 -38.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362270128.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.693 kcal (2) G-P(sol) polarization free energy of solvation -33.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds